carbonic anhydrase

含碳脱水
  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    本研究旨在设计,合成,并评估新型噻唑-磺胺衍生物的细胞毒性活性,特别是化合物M3,M4和M5,通过分子对接和生物测定。合成利用了必需的化合物,包括磺胺,氯-乙酰氯,硫脲,苯甲醛衍生物,和硝酸银。对接研究是使用分子操作环境(MOE)软件进行的,MTT法预测细胞毒性。合成的化合物显示出癌细胞活力的降低。化合物M5对MCF-7细胞的IC50为18.53μg/ml,与顺铂的IC50相当。此外,化合物M3和M4的S评分高于乙酰唑胺,表明与受体活性口袋的结合亲和力更大。在合成的化合物中引入噻唑环增强了它们与受体结合的灵活性和亲和力。金属配合物的加入还提高了化合物阻碍细胞生长的能力。
    This study aimed to design, synthesize, and evaluate the cytotoxic activity of novel thiazole-sulfanilamide derivatives, specifically compounds M3, M4, and M5, through molecular docking and biological assays. The synthesis utilized essential chemical compounds, including sulfanilamide, chloro-acetyl chloride, thiourea, derivatives of benzaldehyde, and silver nitrate. The docking study was carried out using Molecular Operating Environment (MOE) software, and cytotoxic activity was predicted by MTT assay. The synthesized compounds demonstrated a reduction in the viability of cancer cells. Compound M5 had an IC50 of 18.53 µg/ml against MCF-7 cells, comparable to the IC50 of cisplatin. Additionally, compounds M3 and M4 had higher S scores than acetazolamide, indicating greater binding affinity to the active pocket of the receptor. Incorporating the thiazole ring in the synthesized compound augmented their flexibility and affinity for binding to the receptor. The inclusion of the metal complex additionally heightened the compounds\' capacity to impede cellular growth.
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  • 文章类型: Journal Article
    探讨碳酸酐酶抑制与抗癌活性的内在关系,我们制备了四组二芳基脲分子,并测试了hCA-IX和XII对两种乳腺癌细胞系的抑制作用。在21个化合物中,化合物J2(具有-SO2NH2基团)和J16(不具有-SO2NH2基团)在常氧和低氧条件下显示出最佳活性。J16对MDA-MB-231和MCF-7细胞的IC50值,在常氧条件下分别为6.3和3.7µM,分别比U-4-硝基和SLC-0111好1.9/3.3和15.8倍。然而,在低氧条件下,相应的值分别为12.4和1.1μM(MDA-MB-231和MCF-7细胞),比U-4-硝基好8倍。然而,在常氧条件下,对于MDA-MB-231和MCF-7细胞,J2显示出比U-4-硝基(6.3µM)更好的IC50值(1.9/2.7倍)。化合物J2以纳摩尔浓度抑制hCA-IX和XII的活性[Ki值分别为4.09和9.10nM,hCA-II的选择性比为1.8和0.8]。晶体结构和建模研究表明,CA的抑制作用是由于锌在其催化域中的CO2配位位点的阻断而引起的。然而,发现J16不能抑制hCA的活性(Ki>89000nM)。qPCR和蛋白质印迹分析显示HIF1A的转录和表达显着减少(1.5至20倍),CA9和CA12基因中存在J2和J16。发现J2和J16均通过抑制hHSP70的伴侣活性来减少HIF-1α蛋白的积累,IC50值分别为19.4和15.3µM。hCA-IX和XII活性通过结合在活性位点或通过降低表达或通过这两者引起细胞内pH降低的扰动,这导致J2/J16的活性氧种类同时增加2.6/2.0倍(MCF-7)和2.9/1.8倍(MDA-MB-231)。推测在J2和J16存在下细胞周期蛋白D1表达的增加是癌细胞凋亡的间接原因。其他凋亡标志物Bcl-2,Bim的表达,caspase9和caspase3证实了细胞凋亡机制。然而,HIF1A/HIF-1α和hCA-IX/XII的转录/表达降低也意味着J2和J16对细胞外信号调节激酶途径的抑制。
    To investigate the intrinsic relation between carbonic anhydrase inhibition and anticancer activity, we have prepared four sets of diaryl urea molecules and tested for the inhibition of hCA-IX and XII on two breast cancer cell lines. Among 21 compounds, compound J2 (with -SO2NH2 group) and J16 (without -SO2NH2 group) showed the best activity under normoxic and hypoxic conditions. The IC50 values of J16 for MDA-MB-231 and MCF-7 cells, under normoxic condition were 6.3 and 3.7 µM respectively, which are 1.9/3.3 and 15.8 times better than U-4-Nitro and SLC-0111 respectively. Whereas, under the hypoxic condition the corresponding values were 12.4 and 1.1 µM (MDA-MB-231 and MCF-7 cells respectively), which are equal/8 times better than U-4-Nitro. Whereas, J2 showed better IC50 value than U-4-Nitro (6.3 µM) under normoxic condition for both MDA-MB-231 and MCF-7 cells (1.9/2.7 times). Compound J2 inhibits the activity of hCA-IX and XII in nanomolar concentration [Ki values 4.09 and 9.10 nM respectively with selectivity ratio of 1.8 and 0.8 with hCA-II]. The crystal structure and modelling studies demonstrates that the inhibition of CAs arises due to the blocking of the CO2 coordination site of zinc in its catalytic domain. However, J16 was found to be unable to inhibit the activity of hCAs (Ki > 89000 nM). qPCR and western blot analysis showed a significant reduction (1.5 to 20 fold) of the transcription and expression of HIF1A, CA9 and CA12 genes in presence of J2 and J16. Both J2 and J16 found to reduce accumulation of HIF-1α protein by inhibiting the chaperone activity of hHSP70 with IC50 values of 19.4 and 15.3 µM respectively. Perturbation of the hCA-IX and XII activity by binding at active site or by reduced expression or by both leads to the decrease of intracellular pH, which resulted in concomitant increase of reactive oxygen species by 2.6/2.0 (MCF-7) and 2.9/1.8 (MDA-MB-231) fold for J2/J16. Increased cyclin D1 expression in presence of J2 and J16 was presumed to be indirectly responsible for the apoptosis of the cancer cells. Expression of the other apoptosis markers Bcl-2, Bim, caspase 9 and caspase 3 substantiated the apoptosis mechanism. However, decreased transcription/expression of HIF1A/HIF-1α and hCA-IX/XII also implies the inhibition of the extracellular signal-regulated kinase pathway by J2 and J16.
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  • 文章类型: Journal Article
    为了发现潜在的乙酰胆碱酯酶(AChE)和碳酸酐酶(CA)抑制剂,合成了一系列新颖的有机卤素查尔酮衍生物(12-20,23-30),并通过光谱分析对其化学结构进行了表征。它们对AChE和hCA显示出高度有效的抑制作用(对于AChE,Ki值范围为5.07±0.062至65.53±4.36nM,对于hCAI,为13.54±2.55至94.11±10.39nM,对于hCAII,为5.21±0.54至57.44±3.12nM)。此外,具有最高抑制剂评分的查尔酮衍生物停靠在指定的代谢酶受体的活性位点,以及它们的吸收,新陈代谢,和毒性特性根据ADMET的估计进行评估。化合物16和19表现出最高的抑制得分,作为铅化合物出现,并激发了更有效化合物的开发。
    In an effort to discover potential acetylcholinesterase (AChE) and carbonic anhydrase (CA) inhibitors, a novel series of organohalogen chalcone derivatives (12-20, 23-30) was synthesized, and their chemical structures were characterized by spectral analysis. They showed a highly potent inhibition effect on AChE and hCAs (Ki values range from 5.07 ± 0.062 to 65.53 ± 4.36 nM for AChE, 13.54 ± 2.55 to 94.11 ± 10.39 nM for hCA I, and 5.21 ± 0.54 to 57.44 ± 3.12 nM for hCA II). In addition, the chalcone derivatives with the highest inhibitor score docked into the active site of the indicated metabolic enzyme receptors, and their absorption, metabolism, and toxic properties were evaluated according to ADMET\'s estimation.Compounds 16 and 19 exhibited the highest inhibition score, emerged as lead compounds, and inspired the development of more potent compounds.
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  • 文章类型: Journal Article
    这项研究调查了通过碳酸酐酶(CA)生物固井在英国铁路网的铁路路堤下生物固井粘土的可行性,电动实施治疗。与以前使用尿素溶解途径的生物固着研究相比,CA途径是有吸引力的,因为产生CA的细菌可以隔离CO2以产生生物细胞。使用生物刺激和生物增强条件对粘土土壤样品进行电动处理,以诱导生物沉积。使用圆锥贯入试验,根据不排水剪切强度评估处理效果,水分含量,和碳酸钙含量测量。还对处理前后的土壤样品进行了扫描电子显微镜(SEM)分析,以评估反应产物。结果表明,在生物刺激下,土壤的不排水抗剪强度在整个土壤中均匀增加,从17.6kPa(在天然未处理状态下)到106.6kPa。SEM显微照片还显示了生物刺激后土壤结构的明显变化。与生物刺激不同,生物强化没有相同的性能,尽管检测到大量的CaCO3沉淀物,观察到细菌已经进入土壤。前景令人兴奋,因为它被证明是可能的,通过生物刺激天然细菌捕获CO2,同时提高土壤强度,以实现相当大的强度增加,因此,有可能为现有铁路基础设施的复原力和缓解气候变化做出贡献。
    This study investigates the feasibility of biocementing clay soil underneath a railway embankment of the UK rail network via carbonic anhydrase (CA) biocementation, implementing the treatments electrokinetically. Compared to previous biocementation studies using the ureolytic route, the CA pathway is attractive as CA-producing bacteria can sequester CO2 to produce biocement. Clay soil samples were treated electrokinetically using biostimulation and bioaugmentation conditions to induce biocementation. The effects of the treatment were assessed in terms of undrained shear strength using the cone penetration test, moisture content, and calcium carbonate content measurements. Scanning electron microscopy (SEM) analyses were also conducted on soil samples before and after treatment to evaluate the reaction products. The results showed that upon biostimulation, the undrained shear strength of the soil increased uniformly throughout the soil, from 17.6 kPa (in the natural untreated state) to 106.6 kPa. SEM micrographs also showed a clear change in the soil structure upon biostimulation. Unlike biostimulation, bioaugmentation did not have the same performance, although a high amount of CaCO3 precipitates was detected, and bacteria were observed to have entered the soil. The prospects are exciting, as it was shown that it is possible to achieve a considerable strength increase by the biostimulation of native bacteria capturing CO2 while improving the soil strength, thus having the potential to contribute both to the resilience of existing railway infrastructure and to climate change mitigation.
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  • 文章类型: Journal Article
    磺酰胺化合物被称为人类碳酸酐酶(hCA)抑制剂,用于治疗许多疾病,例如癫痫,抗菌,青光眼,各种疾病。1,3-二芳基取代的三氮烯和磺胺胍在许多药物结构中用于治疗目的。基于这两组,新化合物的合成很重要。在本研究中,合成了新型的1,3-二芳基三氮烯取代的磺胺胍衍生物(SG1-13),并通过光谱和分析方法对其进行了充分表征。在体外筛选这些化合物对hCAI和hCAII的抑制作用。所有合成的化合物系列均已被鉴定为潜在的hCA同工酶抑制作用,hCAI的KI值在6.44±0.74-86.85±7.01nM的范围内,而hCAII的KI值在8.16±0.40-77.29±9.56nM的范围内。此外,与用作参考的乙酰唑胺相比,新系列化合物显示出更有效的抑制作用。通过计算机模拟研究证明了对hCAI和hCAII具有结合亲和力的化合物的可能结合位置。总之,已经设计了对hCA同工酶具有不同程度亲和力的化合物,并将其用作选择性hCA抑制剂。这些化合物可以是可用于治疗或预防与青光眼和hCA抑制相关的疾病的潜在替代药剂。
    Sulfonamide compounds known as human carbonic anhydrase (hCA) inhibitors are used in the treatment of many diseases such as epilepsy, antibacterial, glaucoma, various diseases. 1,3-diaryl-substituted triazenes and sulfaguanidine are used for therapeutic purposes in many drug structures. Based on these two groups, the synthesis of new compounds is important. In the present study, the novel 1,3-diaryltriazene-substituted sulfaguanidine derivatives (SG1-13) were synthesized and fully characterized by spectroscopic and analytic methods. Inhibitory effect of these compounds on the hCA I and hCA II was screened as in vitro. All the series of synthesized compounds have been identified as potential hCA isoenzymes inhibitory with KI values in the range of 6.44±0.74-86.85±7.01 nM for hCA I and with KI values in the range of 8.16±0.40-77.29±9.56 nM for hCA II. Moreover, the new series of compounds showed a more effective inhibition effect than the acetazolamide used as a reference. The possible binding positions of the compounds with a binding affinity to the hCA I and hCA II was demonstrated by in silico studies. In conclusion, compounds with varying degrees of affinity for hCA isoenzymes have been designed and as selective hCA inhibitors. These compounds may be potential alternative agents that can be used to treat or prevent diseases associated with glaucoma and hCA inhibition.
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  • 文章类型: Journal Article
    碳酸酐酶(CA)是金属酶,可以通过水合二氧化碳(CO2)来帮助生物在热液喷口中生存。在这项研究中,我们关注阿尔法(α),β(β),和gamma(γ)CAs,存在于海洋热液喷口的嗜热微生物组中。这些酶的编码基因可以通过水平基因转移(HGT)在热液生物之间转移,这是自然生物多样性的重要工具。我们对α-,β-,和来自海洋热液喷口嗜热微生物组的γ-CA编码基因。结果表明,热稳定性α-,β-,和热液喷口微生物种群中的γ-CA。这种关系可能是由于HGT。我们发现了Cycclasticussp.之间α-和β-CA的HGT的证据。,Batymodiolusheckerae的共生体,和Riftiapachyptila通过整合子的内共生体。相反,检测到从内共生体Tevniajerichonana到内共生体Riftiapachyptila的β-CA基因的HGT。此外,氢弧菌SP-41在基因组岛(GI)上含有β-CA基因。该基因可以通过HGT转移到氢弧菌属。MA2-6,一种嗜甲烷的内共生体,和一个甲烷营养内共生体。R.pachyptila的内共生体在基因组中具有γ-CA基因。如果α-和β-CA编码基因来自其他微生物,例如T.jerichonana和cycloclasticussp.的内共生体。作为B.heckerae的内共生体,通过HGT,提出了在热液喷口极端生态系统中生存的热稳定CA酶的必要性理论,并有助于保护热液喷口中的微生物组自然多样性。这些恶劣的生态系统,他们的整体球员,如HGT和内共生体,显著影响地球上生命的富集和海洋中的碳循环。
    Carbonic anhydrases (CAs) are metalloenzymes that can help organisms survive in hydrothermal vents by hydrating carbon dioxide (CO2). In this study, we focus on alpha (α), beta (β), and gamma (γ) CAs, which are present in the thermophilic microbiome of marine hydrothermal vents. The coding genes of these enzymes can be transferred between hydrothermal-vent organisms via horizontal gene transfer (HGT), which is an important tool in natural biodiversity. We performed big data mining and bioinformatics studies on α-, β-, and γ-CA coding genes from the thermophilic microbiome of marine hydrothermal vents. The results showed a reasonable association between thermostable α-, β-, and γ-CAs in the microbial population of the hydrothermal vents. This relationship could be due to HGT. We found evidence of HGT of α- and β-CAs between Cycloclasticus sp., a symbiont of Bathymodiolus heckerae, and an endosymbiont of Riftia pachyptila via Integrons. Conversely, HGT of β-CA genes from the endosymbiont Tevnia jerichonana to the endosymbiont Riftia pachyptila was detected. In addition, Hydrogenovibrio crunogenus SP-41 contains a β-CA gene on genomic islands (GIs). This gene can be transferred by HGT to Hydrogenovibrio sp. MA2-6, a methanotrophic endosymbiont of Bathymodiolus azoricus, and a methanotrophic endosymbiont of Bathymodiolus puteoserpentis. The endosymbiont of R. pachyptila has a γ-CA gene in the genome. If α- and β-CA coding genes have been derived from other microorganisms, such as endosymbionts of T. jerichonana and Cycloclasticus sp. as the endosymbiont of B. heckerae, through HGT, the theory of the necessity of thermostable CA enzymes for survival in the extreme ecosystem of hydrothermal vents is suggested and helps the conservation of microbiome natural diversity in hydrothermal vents. These harsh ecosystems, with their integral players, such as HGT and endosymbionts, significantly impact the enrichment of life on Earth and the carbon cycle in the ocean.
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  • 文章类型: Journal Article
    癫痫是1型葡萄糖转运蛋白缺乏症(G1D)最常见的阵发性表现,通常被认为是药物难治性。它还可以证明具有治疗性饮食抗性。我们研究了乙酰唑胺在G1D中的作用,这是由一些长期和最近的观察结果引起的:首先,失神发作的心电图尖峰波特征通常类似于G1D,自1940年代以来,他们偶尔用乙酰唑胺成功治疗,早在G1D与失神癫痫作为一种独特的综合征分离之前。第二,突触抑制性神经元衰竭表征G1D和,在其他实验模型中,这可以通过改变细胞氯化物梯度的药物如乙酰唑胺来改善。第三,乙酰唑胺在体外有效刺激模型细胞葡萄糖转运。因此,通过医疗记录审查并辅以全球个人调查,确定了17名用乙酰唑胺治疗G1D的抗癫痫药或治疗性饮食难治性个体。乙酰唑胺是可以忍受的,并且减少了其中76%的癫痫发作,58%的研究人员癫痫发作减少了一半以上,包括那些首先表现为肌阵挛性癫痫或婴儿垃圾的人。88%的G1D患者持续服用乙酰唑胺超过6个月,表明持续的耐受性和疗效。该结果为G1D的治疗和机理研究提供了新的途径。
    Epilepsy constitutes the most common paroxysmal manifestation of glucose transporter type 1 deficiency (G1D) and is generally considered medication-refractory. It can also prove therapeutic diet-resistant. We examined acetazolamide effects in G1D motivated by several longstanding and recent observations: First, the electrographic spike-waves characteristic of absence seizures often resemble those of G1D and, since the 1950s, they have occasionally been treated successfully with acetazolamide, well before G1D was segregated from absence epilepsy as a distinct syndrome. Second, synaptic inhibitory neuron failure characterizes G1D and, in other experimental models, this can be ameliorated by drugs that modify cellular chloride gradient such as acetazolamide. Third, acetazolamide potently stimulates model cell glucose transport in vitro. Seventeen antiepileptic drug or therapeutic diet-refractory individuals with G1D treated with acetazolamide were thus identified via medical record review complemented by worldwide individual survey. Acetazolamide was tolerated and decreased seizures in 76% of them, with 58% of all persons studied experiencing seizure reductions by more than one-half, including those who first manifested myoclonic-astatic epilepsy or infantile spams. Eighty-eight percent of individuals with G1D continued taking acetazolamide for over 6 months, indicating sustained tolerability and efficacy. The results provide a novel avenue for the treatment and mechanistic investigation of G1D.
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  • 文章类型: Journal Article
    Xerantholide是一种倍半萜内酯,具有抗淋病和抗疟原虫活性。我们介绍了色黄内酯平衡几何的气相电子结构计算,其绝热电子亲和力(AEA),绝热电离能(AIE)和连接倍半萜的最低能量构象异构体的能垒(ΔE®)。计算是用B3LYP进行的,密度泛函理论(DFT)的M06-2X和ωB97xd变体与大基集相结合。包含振动零点能量,计算的AEA范围从0.740eV[B3LYP/Aug-CC-pVTZ]到0.774eV[B3LYP/6-311++G(d,p)],在所有理论水平上,AIE约为8.6eV。在B3LYP/Aug-CC-pVTZ级别,连接两个最低能量构象异构体的势垒(ΔE®)预计为13.9kcal/mol。基于分子对接分析,黄药内酯通过氢键与淋病奈瑟菌碳酸酐酶(NgCA)的活性位点相互作用,金属-受体相互作用,和非极性烷基和π-烷基相互作用。预测的〜6.8kcal/mol的结合亲和力与标准NgCA抑制剂如乙酰唑胺(〜5.7kcal/mol)获得的亲和力比较好。还在不同的理论水平上进行了涉及黄花素和锌-三咪唑([ZnIm3]2)离子的仿生模型研究,以估计配体与NgCA活性位点模型之间形成的复合物的相互作用能。在B3LYP/6-311++G(d,P)水平。在对接和模型计算中观察到的相互作用模式涉及内酯环。
    Xerantholide is a sesquiterpene lactone that has anti-gonorrhea and anti-plasmodium activities. We present gas-phase electronic structure calculations of the equilibrium geometry of xerantholide, its adiabatic electron affinity (AEA), adiabatic ionization energy (AIE) and the energy barrier (ΔE‡) connecting the lowest energy conformers of the sesquiterpene. The computations were performed with the B3LYP, M06-2X and ωB97xd variants of the density functional theory (DFT) in conjunction with large basis sets. With the inclusion of the vibrational zero point energy, the computed AEA range from 0.740 eV [B3LYP/Aug-CC-pVTZ] to 0.774 eV [B3LYP/6-311++G(d,p)], and the AIE is roughly 8.6 eV at all theoretical levels. At the B3LYP/Aug-CC-pVTZ level, the barrier (ΔE‡) connecting the two lowest energy conformers is predicted to be 13.9 kcal/mol. Based on the molecular docking analysis, xerantholide interacts with the active site of Neisseria gonorrhoeae carbonic anhydrase (NgCA) via hydrogen bonding, metal-acceptor interaction, and non-polar alkyl and pi-alkyl interactions. The predicted binding affinity of - 6.8 kcal/mol compares well with those obtained for standard NgCA inhibitors such as acetazolamide (-5.7 kcal/mol). A biomimetic model study involving xerantholide and zinc-tris imidazole ([ZnIm3]2+) ion was also carried out at different theoretical levels to estimate the interaction energy for the formation of the complex formed between the ligand and the active site model of NgCA. The binding free energy (ΔG) has been calculated to be - 28.5 kcal/mol at the B3LYP/6-311++G(d,p) level. The interaction mode observed in both the docking and the model calculations involves the lactone ring.
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  • 文章类型: Journal Article
    噻唑衍生物是评价其生物活性如抗原生动物抗菌、抗真菌药,抗结核药。考虑到2-氨基噻唑类化合物的医药应用潜力,我们旨在确定2-氨基噻唑衍生物对碳酸酐酶I-II同工酶活性的影响,乙酰胆碱酯酶(AChE)和丁酰胆碱酯酶(BChE)。在我们研究中使用的化学物质中,2-氨基-4-(4-氯苯基)噻唑化合物对hCAI的抑制作用最佳,Ki为0.008±0.001μM。2-氨基-4-(4-溴苯基)噻唑化合物对hCAII表现出最佳的抑制作用,AChE,和BChE,Ki分别为0.124±0.017、0.129±0.030和0.083±0.041μM,分别。分子对接分析表明,化合物2-氨基-4-(5,6,7,8-四氢-2-萘基)噻唑对hCAⅠ的抑制效力最高,HCAII,AChE,BChE的估计结合能为-6.75,-7.61,-7.86,-7.96kcal/mol,分别。
    The thiazole derivatives are desirable compounds in the evaluation of their biological activities such as antiprotozoal antibacterial, antifungal, antituberculosis. Considering the medical application potential of 2-amino thiazole compounds, we aimed to determine the effects of 2-amino thiazole derivatives on the activities of carbonic anhydrase I-II isoenzymes, acetylcholinesterase (AChE) and butyrylcholinesterase (BChE). Among the chemicals we used in our study, 2-amino-4-(4-chlorophenyl)thiazole compound exhibited the best inhibition against hCA I with Ki of 0.008 ± 0.001 μM. The 2-amino-4-(4-bromophenyl)thiazole compound exhibited the best inhibition against hCA II, AChE, and BChE with Ki of 0.124 ± 0.017, 0.129 ± 0.030, and 0.083 ± 0.041 μM, respectively. Molecular docking analysis showed that compound 2-amino-4-(5,6,7,8-tetrahydro-2-naphthyl)thiazole had the highest inhibitory potency against hCA I, hCA II, AChE, BChE with the estimated binding energy of -6.75, -7.61, -7.86, -7.96 kcal/mol, respectively.
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