antimicrobial peptides

抗菌肽
  • 文章类型: Journal Article
    食源性传播是许多与胃肠道相关的病毒的公认途径,肝,或神经系统疾病。因此,它是必不可少的,以确定新的生物活性的广谱抗抗病毒活性的化合物,利用创新的解决方案来应对这些危害。最近,抗微生物肽(AMP)已被认为是有前途的抗病毒剂。的确,虽然这些分子的抗菌和抗真菌作用已被广泛报道,它们作为潜在抗病毒药物的用途尚未得到充分研究。在这里,先前鉴定或新设计的AMP的抗病毒活性被评估为对抗无包膜RNA病毒,甲型肝炎病毒(HAV)和鼠诺如病毒(MNV),人类诺如病毒的替代品.此外,进行特异性测定以识别肽可以在病毒感染周期的哪个阶段发挥作用。结果表明,几乎所有的肽都表现出杀病毒作用,在HAV或MNV中具有约90%的感染性降低。然而,证明了十肽RiLK1,连同其抗菌和抗真菌特性,HAV和MNV的病毒感染显着减少,可能是通过与病毒颗粒的直接相互作用导致其损伤或阻碍细胞受体的识别。因此,RiLK1可以代表一种通用的抗微生物剂,可有效对抗各种食源性病原体,包括病毒,细菌,和真菌。
    Food-borne transmission is a recognized route for many viruses associated with gastrointestinal, hepatic, or neurological diseases. Therefore, it is essential to identify new bioactive compounds with broad-spectrum antiviral activity to exploit innovative solutions against these hazards. Recently, antimicrobial peptides (AMPs) have been recognized as promising antiviral agents. Indeed, while the antibacterial and antifungal effects of these molecules have been widely reported, their use as potential antiviral agents has not yet been fully investigated. Herein, the antiviral activity of previously identified or newly designed AMPs was evaluated against the non-enveloped RNA viruses, hepatitis A virus (HAV) and murine norovirus (MNV), a surrogate for human norovirus. Moreover, specific assays were performed to recognize at which stage of the viral infection cycle the peptides could function. The results showed that almost all peptides displayed virucidal effects, with about 90% of infectivity reduction in HAV or MNV. However, the decapeptide RiLK1 demonstrated, together with its antibacterial and antifungal properties, a notable reduction in viral infection for both HAV and MNV, possibly through direct interaction with viral particles causing their damage or hindering the recognition of cellular receptors. Hence, RiLK1 could represent a versatile antimicrobial agent effective against various foodborne pathogens including viruses, bacteria, and fungi.
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  • 文章类型: Case Reports
    分子影像学标记可用于区分感染和无菌性炎症,确定感染的严重程度,并监测治疗反应。这些标记之一是ubicicidin(29-41)(UBI),与细菌膜壁结合并用镓68(68Ga)标记的阳离子肽片段,正电子发射体放射性同位素。最近,在正电子发射断层扫描(PET)/计算机断层扫描(CT)中使用UBI来改善病变的检测受到了广泛的关注。在这里,我们报告了第一例在巴西进行的68Ga-UBIPET/CT。该患者是一名39岁的女性,接受扫描以确认其左胫骨骨折的慢性骨髓炎的临床怀疑。PET图像显示胫骨骨折病灶和固定钢板后轮廓附近的放射性示踪剂摄取,在胫骨远端一半周围的软组织中,和左腓骨远端非合并骨折。进行了局部清洁手术,和从手术部位收集的标本的培养证实了金黄色葡萄球菌的存在。在目前的情况下,68Ga-UBIPET/CT,一种非侵入性成像模式,确定了体内的感染灶,表明其临床应用的潜力。
    Molecular imaging markers can be used to differentiate between infection and aseptic inflammation, determine the severity of infection, and monitor treatment responses. One of these markers is ubiquicidin(29-41) (UBI), a cationic peptide fragment that binds to the bacterial membrane wall and is labeled with gallium-68 (68Ga), a positron emitter radioisotope. The use of UBI in positron emission tomography (PET)/computed tomography (CT) for improved detection of lesions has been receiving considerable attention recently. Herein, we report the first case of 68Ga-UBI PET/CT performed in Brazil. The patient was a 39-year-old woman referred for a scan to confirm a clinical suspicion of chronic osteomyelitis of her fractured left tibia. PET images revealed radiotracer uptake near the posterior contour of the tibial fracture focus and the fixation plate, in the soft tissue around the distal half of the tibia, and in the non-consolidated fracture of the left distal fibula. Surgery for local cleaning was performed, and culture of a specimen collected from the surgical site confirmed the presence of Staphylococcus aureus. In the present case, 68Ga-UBI PET/CT, a non-invasive imaging modality, identified the infection foci in vivo, indicating its potential for clinical use.
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  • 文章类型: Journal Article
    一个主要问题是找到一种有效的生物标志物,能够在存在和不存在风险因素的情况下诊断牙周病。的确,在临床和流行病学调查中,已经描述了吸烟与牙周疾病之间的关联及其对抗菌肽表现的影响。抗菌肽cathelicidin(LL-37)在保持牙周健康方面至关重要。
    这项调查检查并对比了牙周炎吸烟者和非吸烟者唾液中的cathelicidin水平。该研究还试图建立这种生物标志物的诊断能力,以区分牙周健康和疾病。
    该研究涉及从160名参与者中收集未刺激的唾液样本,包括80例被诊断为牙周炎的患者(其中40例为吸烟者,40例为非吸烟者)和80例无牙周炎的患者(40例为吸烟者,40例为非吸烟者)。评估临床牙周参数,包括记录探测袋深度,临床依恋水平,以及探查时出血的百分比。随后,进行酶联免疫吸附测定以定量从上述受试者获得的唾液样品中LL-37的蛋白质水平。
    在非吸烟者牙周炎(NSP)患者中发现唾液LL-37的最高水平,其次是吸烟者牙周炎(SP)组,然后是非吸烟者健康(NSH)组,而在健康吸烟者(HS)组中发现最低水平。同时,LL-37似乎是区分牙周健康和是否存在吸烟的疾病的一个非常好的生物标志物.
    牙周炎导致吸烟者和非吸烟者患者的唾液LL-37水平与健康个体相比显著升高。这些水平与牙周参数呈正相关,可以作为预测牙周炎的有价值的诊断工具,而吸烟显著降低了这些水平。
    UNASSIGNED: A major issue is finding a valid biomarker able to diagnose periodontal disease with the presence and absence of risk factors. Indeed, the association between smoking and periodontal diseases and its impact on the manifestation of antimicrobial peptides has been delineated in clinical and epidemiological investigations. The antimicrobial peptide cathelicidin (LL-37) is pivotal in preserving periodontal health.
    UNASSIGNED: This investigation examines and contrasts the levels of cathelicidin in the saliva of smokers and nonsmokers of periodontitis. The study also seeks to establish this biomarker\'s diagnostic ability to differentiate between periodontal health and disease.
    UNASSIGNED: The study involved the collection of unstimulated saliva samples from 160 participants, comprising 80 patients diagnosed with periodontitis (40 of whom were smokers and 40 were nonsmokers) and 80 periodontitis-free individuals (40 smokers and 40 nonsmokers). The clinical periodontal parameters were assessed, including recording the probing pocket depth, the level of clinical attachment, and the percentage of bleeding on probing. Subsequently, enzyme-linked immunosorbent assays were conducted to quantify the protein levels of LL-37 in the saliva samples obtained from the subjects mentioned above.
    UNASSIGNED: The highest level of salivary LL-37 was found in the nonsmoker periodontitis (NSP) patients, followed by the group of smoker periodontitis (SP) and then nonsmoker healthy (NSH) group, while the lowest level was found in the healthy smoker (HS) group. At the same time, the LL-37 seems to be a very good biomarker in differentiating periodontal health from disease with the presence and absence of smoking.
    UNASSIGNED: Periodontitis results in a significant elevation of salivary LL-37 levels in smoker and nonsmoker patients compared to healthy individuals. These levels are positively correlated with the periodontal parameter and can serve as a valuable diagnostic tool to predict periodontitis, whereas smoking significantly reduces these levels.
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  • 文章类型: Journal Article
    新鲜的鱼是非常易腐烂的,主要是由于它们的水分含量,大量的游离氨基酸和多不饱和脂肪酸。微生物和化学反应导致腐败,导致质量损失,人类健康风险和市场价值降低。因此,渔业一直愿意探索新技术,通过减少微生物和生化损害来提高鱼产品的质量和安全性。在这种情况下,抗微生物活性包装是满足消费者需求的一种有前途的解决方案。本研究的主要目的是评估用抗菌肽1018K6功能化的活性聚丙烯包装对微生物生长的影响,生鲑鱼片的理化特性和感官特性。结果表明,7天后,1018K6-聚丙烯的施用强烈抑制了鱼片上病原和特定腐败生物(SSO)的微生物生长。此外,鲑鱼在储存期间也根据挥发性化学腐败指数(CSIs)保持其新鲜度。在进行相同分析的Sardasarda汉堡包上获得了类似的结果。这项工作提供了进一步的证据,表明1018K6聚合物具有良好的潜力,可作为抗微生物包装应用于食品市场,以提高质量并保持鱼产品的感官特性。
    Fresh fish are highly perishable, owing mainly to their moisture content, high amount of free amino acids and polyunsaturated fatty acids. Microorganisms and chemical reactions cause the spoilage, leading to loss in quality, human health risks and a market value reduction. Therefore, the fishing industry has always been willing to explore new technologies to increase quality and safety of fish products through a decrease of the microbiological and biochemical damage. In this context, antimicrobial active packaging is one such promising solution to meet consumer demands. The main objective of this study was to evaluate the effects of an active polypropylene-based packaging functionalized with the antimicrobial peptide 1018K6 on microbial growth, physicochemical properties and the sensory attributes of raw salmon fillets. The results showed that application of 1018K6-polypropylene strongly inhibited the microbial growth of both pathogenic and specific spoilage organisms (SSOs) on fish fillets after 7 days. Moreover, salmon also kept its freshness as per volatile chemical spoilage indices (CSIs) during storage. Similar results were obtained on hamburgers of Sarda sarda performing the same analyses. This work provides further evidence that 1018K6-polymers have good potential as antimicrobial packaging for application in the food market to enhance quality and preserve the sensorial properties of fish products.
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  • 文章类型: Journal Article
    已经认识到抗微生物肽(AMP)具有靶向对于生物膜形成重要的过程的能力。鉴于大量的AMP,识别潜在的抗生物膜候选物仍然是一个重大挑战,并提示在广泛的体外和体内研究之前需要进行初步的计算机研究。我们已经开发了生物膜-AMP(B-AMP),与生物膜研究相关的AMPs的三维结构和功能库。在当前版本中,B-AMP包含使用一套分子建模工具开发的5544AMP(来自DRAMP数据库)的预测3D结构模型。该存储库支持用户友好的搜索,使用源,name,DRAMPID,和PepID(B-AMP特有)。Further,AMP被注释到现有的生物膜文献中,由一个超过10,000篇文章的庞大图书馆组成,增强B-AMP的功能能力。为了提供B-AMP的可用性示例,我们使用新兴病原体纹状体棒状杆菌的分选酶C生物膜靶标作为案例研究。为此,对来自B-AMP的100个结构AMP模型进行针对纹状体梭菌分选酶C蛋白的催化位点残基的计算机蛋白质-肽分子对接。根据对接分数和相互作用的残基,我们建议使用一个偏好量表,使用哪些候选AMP可以进一步进行计算机模拟,体外和体内测试。3D蛋白质-肽相互作用模型和偏好量表可在B-AMP中获得。B-AMP是AMP的全面结构和功能库,并将作为未来研究探索用于生物膜研究的AMP的起点。B-AMP在https://b-amp免费提供给社区。karishmakaushiklab.com,并将定期更新与AMP结构,与潜在生物膜靶标的相互作用模型,和生物膜文献的注释。
    Antimicrobial peptides (AMPs) have been recognized for their ability to target processes important for biofilm formation. Given the vast array of AMPs, identifying potential anti-biofilm candidates remains a significant challenge, and prompts the need for preliminary in silico investigations prior to extensive in vitro and in vivo studies. We have developed Biofilm-AMP (B-AMP), a curated 3D structural and functional repository of AMPs relevant to biofilm studies. In its current version, B-AMP contains predicted 3D structural models of 5544 AMPs (from the DRAMP database) developed using a suite of molecular modeling tools. The repository supports a user-friendly search, using source, name, DRAMP ID, and PepID (unique to B-AMP). Further, AMPs are annotated to existing biofilm literature, consisting of a vast library of over 10,000 articles, enhancing the functional capabilities of B-AMP. To provide an example of the usability of B-AMP, we use the sortase C biofilm target of the emerging pathogen Corynebacterium striatum as a case study. For this, 100 structural AMP models from B-AMP were subject to in silico protein-peptide molecular docking against the catalytic site residues of the C. striatum sortase C protein. Based on docking scores and interacting residues, we suggest a preference scale using which candidate AMPs could be taken up for further in silico, in vitro and in vivo testing. The 3D protein-peptide interaction models and preference scale are available in B-AMP. B-AMP is a comprehensive structural and functional repository of AMPs, and will serve as a starting point for future studies exploring AMPs for biofilm studies. B-AMP is freely available to the community at https://b-amp.karishmakaushiklab.com and will be regularly updated with AMP structures, interaction models with potential biofilm targets, and annotations to biofilm literature.
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  • 文章类型: Journal Article
    抗菌肽(AMP)是先天免疫的关键效应子,是开发新抗菌药物的有前途的分子。然而,为了实现这个目标,需要克服一些问题:(i)在高浓度下的细胞毒性作用;(ii)差的生物稳定性和(iii)难以到达靶部位。青蛙的皮肤是最丰富的天然仓库之一,多年来,从它中分离出许多肽,表征并分为几个家庭,包括颞叶,Brevinins,黑植物和esculentins.在这次审查中,我们总结了属于esculentiin-1家族的肽的分离/表征如何驱使我们设计类似物,即esculentin-1a(1-21)NH2,具有强大的抗微生物作用和免疫调节特性。该肽具有广泛的活性,特别是针对机会性革兰氏阴性细菌铜绿假单胞菌。我们描述了该肽的结构特征和体外/体内生物学特性以及用于改善其生物学特性的策略。其中:(i)设计携带D氨基酸的非对映异构体,以降低肽的细胞毒性并改善其半衰期;(ii)将肽与金纳米颗粒共价缀合或将其封装到聚(丙交酯-共-乙交酯)纳米颗粒中;(iii)将肽固定到生物医学设备(例如硅接触镜)上,以获得能够减少微生物生长和附着的抗菌表面。总结迄今为止获得的最佳结果,这篇综述追溯了导致这些青蛙皮肤AMPs走向临床使用的基于肽的药物方向的所有步骤。
    Antimicrobial Peptides (AMPs) are the key effectors of the innate immunity and represent promising molecules for the development of new antibacterial drugs. However, to achieve this goal, some problems need to be overcome: (i) the cytotoxic effects at high concentrations; (ii) the poor biostability and (iii) the difficulty in reaching the target site. Frog skin is one of the richest natural storehouses of AMPs, and over the years, many peptides have been isolated from it, characterized and classified into several families encompassing temporins, brevinins, nigrocins and esculentins. In this review, we summarized how the isolation/characterization of peptides belonging to the esculentin-1 family drove us to the design of an analogue, i.e. esculentin-1a(1-21)NH2, with a powerful antimicrobial action and immunomodulatory properties. The peptide had a wide spectrum of activity, especially against the opportunistic Gram-negative bacterium Pseudomonas aeruginosa. We described the structural features and the in vitro/in vivo biological characterization of this peptide as well as the strategies used to improve its biological properties. Among them: (i) the design of a diastereomer carrying Damino acids in order to reduce the peptide\'s cytotoxicity and improve its half-life; (ii) the covalent conjugation of the peptide to gold nanoparticles or its encapsulation into poly(lactide- co-glycolide) nanoparticles; and (iii) the peptide immobilization to biomedical devices (such as silicon hydrogel contact lenses) to obtain an antibacterial surface able to reduce microbial growth and attachment. Summing up the best results obtained so far, this review traces all the steps that led these frog-skin AMPs to the direction of peptide-based drugs for clinical use.
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  • 文章类型: Journal Article
    先前已经报道了源自人载脂蛋白E的受体结合区的生物活性肽。所有这些肽,包含该区域的片段或在同一区域中鉴定的短重复阳离子序列的基础上设计,显示对广谱细菌的毒性活性和有趣的免疫调节作用。然而,到目前为止,还没有描述这些分子发挥抗生物膜特性的能力。在目前的工作中,我们报道了一种新型肽的特征,对应于人载脂蛋白E的133至167位残基,这里命名为ApoE(133-167)。这种肽,除了表现出与其他ApoE衍生肽相当的有趣特性外,例如对广谱细菌的直接杀伤活性或下调脂多糖诱导的细胞因子释放的能力,还具有显著的抗生物膜特性。的确,该肽能够强烈影响细胞外基质的形成以及包封细菌的活力。值得注意的是,ApoE(133-167)对人和鼠细胞系无毒,并且在存在膜模拟剂的情况下能够呈现有序的构象。一起来看,收集有关ApoE(133-167)的生物学和结构特性的证据为基于人源生物活性肽的治疗剂设计开辟了新的视角。
    Bioactive peptides derived from the receptor-binding region of human apolipoprotein E have previously been reported. All these peptides, encompassing fragments of this region or designed on the basis of short repeated cationic sequences identified in the same region, show toxic activities against a broad spectrum of bacteria and interesting immunomodulatory effects. However, the ability of these molecules to exert antibiofilm properties has not been described so far. In the present work, we report the characterization of a novel peptide, corresponding to residues 133 to 167 of human apolipoprotein E, here named ApoE (133-167). This peptide, besides presenting interesting properties comparable with those reported for other ApoE-derived peptides, such as a direct killing activity against a broad spectrum of bacteria or the ability to downregulate lipopolysaccharide-induced cytokine release, is also endowed with significant antibiofilm properties. Indeed, the peptide is able to strongly affect the formation of the extracellular matrix and also the viability of encapsulated bacteria. Noteworthy, ApoE (133-167) is not toxic toward human and murine cell lines and is able to assume ordered conformations in the presence of membrane mimicking agents. Taken together, collected evidences about biological and structural properties of ApoE (133-167) open new perspectives in the design of therapeutic agents based on human-derived bioactive peptides.
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