Xenopus Proteins

非洲爪鱼蛋白质类
  • 文章类型: Journal Article
    心脏发育是一个微妙而复杂的过程,由各种信号通路的协调调节。在这项研究中,我们通过调节Wnt/β-Catenin信号通路研究了sox18在心脏发育中的作用。我们的时空表达分析表明,sox18主要在心脏中表达,branch弓,咽弓,脊髓,和热带非洲爪狼胚胎尾芽期的节间血管。Sox18在热带X胚胎中的过表达会导致心脏水肿,而sox18的功能丧失可以在不同阶段改变发育心脏标志物gata4的信号,这表明sox18在心脏发育中起着至关重要的作用。SOX18在人脐静脉内皮细胞中的敲除表明Sox18与β-CATENIN之间存在联系,Wnt信号通路的关键调节因子。Sox18负调节islet1和tbx3,Wnt/β-Catenin信号的下游因子,在线性心脏管形成和心脏循环阶段。一起来看,我们的发现强调了Sox18通过抑制Wnt/β-Catenin信号在心脏发育中的关键作用。
    Heart development is a delicate and complex process regulated by coordination of various signaling pathways. In this study, we investigated the role of sox18 in heart development by modulating Wnt/β-Catenin signaling pathways. Our spatiotemporal expression analysis revealed that sox18 is mainly expressed in the heart, branchial arch, pharyngeal arch, spinal cord, and intersegmental vessels at the tailbud stage of Xenopus tropicalis embryo. Overexpression of sox18 in the X. tropicalis embryos causes heart edema, while loss-of-function of sox18 can change the signal of developmental heart marker gata4 at different stages, suggesting that sox18 plays an essential role in the development of the heart. Knockdown of SOX18 in human umbilical vein endothelial cells suggests a link between Sox18 and β-CATENIN, a key regulator of the Wnt signaling pathway. Sox18 negatively regulates islet1 and tbx3, the downstream factors of Wnt/β-Catenin signaling, during the linear heart tube formation and the heart looping stage. Taken together, our findings highlight the crucial role of Sox18 in the development of the heart via inhibiting Wnt/β-Catenin signaling.
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  • 文章类型: Journal Article
    同源结构域转录因子的脊椎动物六(Sineoculishomeobox)家族在几个器官的发育中起着至关重要的作用。Six1在颅骨胎盘发育中起着核心作用,包括内耳的前体组织,以及其他颅感觉器官和肾脏。在人类中,SIX1中的突变是一些Branchio-oto-renic综合征(BOR)的基础,其特征是中度至重度听力损失。我们利用CRISPR/Cas9技术在热带非洲爪狼中建立了一个可供研究界使用的6个突变系。我们证明在幼虫阶段,6个无效的动物显示出严重的破坏,在耳泡中推定的6个靶基因的基因表达,颅神经节,branch弓,和神经管。在t阶段,6个零动物显示畸形Meckel\'s,ceratohyal,耳囊软骨形态。这种突变系对于研究几种器官的发育以及涉及这些组织的先天性综合症具有价值。
    The vertebrate Six (Sine oculis homeobox) family of homeodomain transcription factors plays critical roles in the development of several organs. Six1 plays a central role in cranial placode development, including the precursor tissues of the inner ear, as well as other cranial sensory organs and the kidney. In humans, mutations in SIX1 underlie some cases of Branchio-oto-renal (BOR) syndrome, which is characterized by moderate-to-severe hearing loss. We utilized CRISPR/Cas9 technology to establish a six1 mutant line in Xenopus tropicalis that is available to the research community. We demonstrate that at larval stages, the six1-null animals show severe disruptions in gene expression of putative Six1 target genes in the otic vesicle, cranial ganglia, branchial arch, and neural tube. At tadpole stages, six1-null animals display dysmorphic Meckel\'s, ceratohyal, and otic capsule cartilage morphology. This mutant line will be of value for the study of the development of several organs as well as congenital syndromes that involve these tissues.
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  • 文章类型: Journal Article
    Arpp19是一种有效的PP2A-B55抑制剂,可调节该磷酸酶以确保有丝分裂/减数分裂底物的稳定磷酸化。在G2-M,Arpp19在S67上被Greatwall激酶磷酸化。这种磷酸化的Arpp19形式显示出对PP2A-B55的高亲和力和缓慢的去磷酸化速率,作为PP2A-B55底物的竞争对手。赋予S67缓慢去磷酸化动力学的分子决定因素是未知的。PKA还磷酸化Arpp19。尽管潜在的信号传导机制难以捉摸,但在S109上进行的这种磷酸化对于维持非洲爪的卵母细胞的前期I-停滞至关重要。这里,我们表征了赋予S67高亲和力和缓慢去磷酸化并控制Arpp19的PP2A-B55抑制活性的分子决定簇。此外,我们表明,磷酸S109通过增加PP2A-B55的催化作用来限制S67的磷酸化。最后,我们发现了这两个磷酸化位点之间的双反馈回路,这对于协调细胞分裂过程中Arpp19依赖性PP2A-B55抑制和细胞周期蛋白B/Cdk1激活的时间模式至关重要。
    Arpp19 is a potent PP2A-B55 inhibitor that regulates this phosphatase to ensure the stable phosphorylation of mitotic/meiotic substrates. At G2-M, Arpp19 is phosphorylated by the Greatwall kinase on S67. This phosphorylated Arpp19 form displays a high affinity to PP2A-B55 and a slow dephosphorylation rate, acting as a competitor of PP2A-B55 substrates. The molecular determinants conferring slow dephosphorylation kinetics to S67 are unknown. PKA also phosphorylates Arpp19. This phosphorylation performed on S109 is essential to maintain prophase I-arrest in Xenopus oocytes although the underlying signalling mechanism is elusive. Here, we characterize the molecular determinants conferring high affinity and slow dephosphorylation to S67 and controlling PP2A-B55 inhibitory activity of Arpp19. Moreover, we show that phospho-S109 restricts S67 phosphorylation by increasing its catalysis by PP2A-B55. Finally, we discover a double feed-back loop between these two phospho-sites essential to coordinate the temporal pattern of Arpp19-dependent PP2A-B55 inhibition and Cyclin B/Cdk1 activation during cell division.
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  • 文章类型: Journal Article
    Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels belong to the superfamily of voltage-gated potassium (Kv) and cyclic nucleotide-gated (CNG) channels. HCN channels contain the glycine-tyrosine-glycine (GYG) sequence that forms part of the selectivity filter, a similar structure than some potassium channels; however, they permeate both sodium and potassium, giving rise to an inward current. Yet a second amino acid sequence, leucine-cysteine-isoleucine (LCI), next to GYG, is well-preserved in all HCNs but not in the selective potassium channels. In this study we used site-directed mutagenesis and electrophysiology in frog oocytes to determine whether the LCI sequence affects the kinetics of HCN2 currents. Permeability and voltage dependence were evaluated, and we found a role of LCI in the gating mechanism combined with changes in ion permeability. The I residue resulted critical to this function.
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  • 文章类型: Journal Article
    允许单细胞分析的技术正在获得广泛关注,这些研究大多利用基因组学的方法。虽然纳米流体技术已经实现了单细胞的质谱分析,这些测量仅限于代谢组学和脂质组学研究.单细胞蛋白质组学具有提高我们对细胞间异质性的理解的潜力。然而,这种方法面临的挑战包括样本可用性有限,以及高度敏感的样品收集方法的要求,清理,和检测。我们提出了一种克服这些限制的技术,通过将基于微量移液管(拉玻璃毛细管)的样品收集策略与离线样品制备和nanoLC-MS/MS相结合,通过自下而上的蛋白质组学策略分析蛋白质。本研究探讨了两种类型的蛋白质组学数据获取策略,即数据依赖(DDA)和数据独立获取(DIA)。研究结果表明,DIA更灵敏,能够分析来自约130μm非洲爪狼胚胎细胞中含有<6nL细胞质的>1600种蛋白质。发现该方法在从跨越1-128细胞发育阶段的单细胞获得可重复的蛋白质定量方面是稳健的。此外,我们使用微量移液管取样研究了单个胚胎细胞内的细胞间异质性,并研究了胚胎发育早期沿动物-植物轴和背-腹轴的不对称性.对动物-植物轴的研究导致发现了沿动物-植物轴的各种不对称分布的蛋白质。我们进一步将从我们的蛋白质组数据集发现的命中与其他研究进行了比较,并使用正交成像技术验证了一些命中。这项研究是非洲爪鱼种质相关蛋白DDX4/VASA植物富集的第一份报告。总的来说,这里提供的方法和数据有望在发育生物学中发挥重要作用。
    Techniques that allow single cell analysis are gaining widespread attention, and most of these studies utilize genomics-based approaches. While nanofluidic technologies have enabled mass spectrometric analysis of single cells, these measurements have been limited to metabolomics and lipidomic studies. Single cell proteomics has the potential to improve our understanding of intercellular heterogeneity. However, this approach has faced challenges including limited sample availability, as well as a requirement of highly sensitive methods for sample collection, cleanup, and detection. We present a technique to overcome these limitations by combining a micropipette (pulled glass capillary) based sample collection strategy with offline sample preparation and nanoLC-MS/MS to analyze proteins through a bottom-up proteomic strategy. This study explores two types of proteomics data acquisition strategies namely data-dependent (DDA) and data-independent acquisition (DIA). Results from the study indicate DIA to be more sensitive enabling analysis of >1600 proteins from ∼130 μm Xenopus laevis embryonic cells containing <6 nL of cytoplasm. The method was found to be robust in obtaining reproducible protein quantifications from single cells spanning the 1-128-cell stages of development. Furthermore, we used micropipette sampling to study intercellular heterogeneity within cells in a single embryo and investigated embryonic asymmetry along both animal-vegetal and dorsal-ventral axes during early stages of development. Investigation of the animal-vegetal axis led to discovery of various asymmetrically distributed proteins along the animal-vegetal axis. We have further compared the hits found from our proteomic data sets with other studies and validated a few hits using an orthogonal imaging technique. This study forms the first report of vegetal enrichment of the germ plasm associated protein DDX4/VASA in Xenopus embyos. Overall, the method and data presented here holds promise to enable important leads in developmental biology.
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  • 文章类型: Journal Article
    Caffeic acid is an antioxidant commonly used to promote hematopoiesis and hemostasis. However, little is known about its systemic safety profile in reproduction and development. Here, we focused on the reproductive and developmental toxicity of caffeic acid in F0 female mice and F1 offspring. In the three-segment study, the F0 female mice were continuously exposed to 0, 0.15, 5 or 150 mg/kg/day of caffeic acid by gavage. We found that 5 mg/kg/day and 150 mg/kg/day of caffeic acid affected implantation of embryos when administered before gestation day 6. In addition, 150 mg/kg/day of caffeic acid affected fetal weight gain. No maternal toxicity, fetal teratogenesis or post-natal effects on pup development were observed. The no-observed-adverse-effect-level was 0.15 mg/kg/day for pregnant mice under the conditions of this study.
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  • 文章类型: Journal Article
    The study evaluated depression and self-care management among patients with diabetes and/or heart disease in a 12-month randomized trial conducted in Los Angeles County Department of Health Services (LAC-DHS) community clinics. We compared LAC-DHS clinic usual care (UC) versus A-Helping-Hand (AHH) intervention in which bilingual promotoras, hired and supervised by the research project, provided 6 weekly psychoeducational sessions followed by boosters. Of 1957 screened, 348 depressed patients (PHQ-9 score≥10) were enrolled, randomized to AHH (n=178) or UC (n=170) after baseline interview assessing mental health, treatment receipt, co-morbid illness, self-care management, and environmental stressors. Comprehensive assessments were repeated at 6 and 12months by an independent interviewer blind to the study group. Patients (85% diabetes, 4% heart disease, 11% both) were predominantly female (85%), Latino (99%), born outside of the US (91%). Study attrition at 12months was 30% (AHH 31%, UC 28%, P=0.51). No baseline characteristics were associated with attrition. Half of AHH patients received 4 or more sessions. Intend-to-treat analysis found study groups did not vary significantly at 6 and 12months. Before-after paired t-tests showed significant improvements in most measures in each group. During the trial, LAC-DHS activated healthcare improvements including depression screening, referral to clinic staff including community health workers (with the same role as the promotoras) to improve patient care management. Both patient groups performed equally well which may be a function of the enhanced healthcare model. Future research should replicate the promotora-integrated care model with other groups and care settings with similar comorbid conditions.
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  • 文章类型: Comparative Study
    The signal-induced proliferation-associated (SIPA) protein family belongs to the RapGAP protein superfamily. Previous studies mainly focused on the expression and function of SIPA genes in vertebrate neuronal tissue. Only limited data about the embryonic expression pattern of the genes are currently available. Our study provides the first expression analysis of sipa1, sipa1l1, sipa1l2, and sipa1l3 during early development of the vertebrate organism Xenopus laevis. In silico, analysis revealed that all genes are highly conserved across species. Semi-quantitative RT-PCR experiments demonstrated that the RNA of all genes was maternally supplied. By whole mount in situ hybridization approaches, we showed that sipa1 is mainly expressed in various sensory organs, the respiratory and blood system, heart, neural tube, and eye. In contrast, sipa1l1 showed a broad expression during development in particular within the brain, somites, eye, and heart. Sipa1l2 was detected in the branchial arches, glomerulus, and the developing eye. In contrast, sipa1l3 revealed a tissue specific expression within the olfactory and otic vesicles, the cranial placodes and ganglia, neural tube, pronephros, retina, and lens. In summary, all sipa gene family members are expressed throughout the whole developing Xenopus organism and might play an important role during vertebrate early embryogenesis.
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  • 文章类型: Comparative Study
    Mandibulofacial dysostosis (MFD) is a human developmental disorder characterized by defects of the facial bones. It is the second most frequent craniofacial malformation after cleft lip and palate. Nager syndrome combines many features of MFD with a variety of limb defects. Mutations in SF3B4 (splicing factor 3b, subunit 4) gene, which encodes a component of the pre-mRNA spliceosomal complex, were recently identified as a cause of Nager syndrome, accounting for 60% of affected individuals. Nothing is known about the cellular pathogenesis underlying Nager type MFD. Here we describe the first animal model for Nager syndrome, generated by knocking down Sf3b4 function in Xenopus laevis embryos, using morpholino antisense oligonucleotides. Our results indicate that Sf3b4-depleted embryos show reduced expression of the neural crest genes sox10, snail2 and twist at the neural plate border, associated with a broadening of the neural plate. This phenotype can be rescued by injection of wild-type human SF3B4 mRNA but not by mRNAs carrying mutations that cause Nager syndrome. At the tailbud stage, morphant embryos had decreased sox10 and tfap2a expression in the pharyngeal arches, indicative of a reduced number of neural crest cells. Later in development, Sf3b4-depleted tadpoles exhibited hypoplasia of neural crest-derived craniofacial cartilages, phenocopying aspects of the craniofacial skeletal defects seen in Nager syndrome patients. With this animal model we are now poised to gain important insights into the etiology and pathogenesis of Nager type MFD, and to identify the molecular targets of Sf3b4.
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  • 文章类型: Journal Article
    Understanding the genetic programs underlying neural development is an important goal of developmental and stem cell biology. In the amphibian blastula, cells from the roof of the blastocoel are pluripotent. These cells can be isolated, and programmed to generate various tissues through manipulation of genes expression or induction by morphogens. In this manuscript protocols are described for the use of Xenopus laevis blastocoel roof explants as an assay system to investigate key in vivo and in vitro features of early neural development. These protocols allow the investigation of fate acquisition, cell migration behaviors, and cell autonomous and non-autonomous properties. The blastocoel roof explants can be cultured in a serum-free defined medium and grafted into host embryos. This transplantation into an embryo allows the investigation of the long-term lineage commitment, the inductive properties, and the behavior of transplanted cells in vivo. These assays can be exploited to investigate molecular mechanisms, cellular processes and gene regulatory networks underlying neural development. In the context of regenerative medicine, these assays provide a means to generate neural-derived cell types in vitro that could be used in drug screening.
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