Second-generation sequencing

第二代测序
  • 文章类型: Case Reports
    常染色体显性多囊肾病(ADPKD)是一种常见的遗传性疾病。PKD1基因负责大多数ADPKD病例,该基因的突变表现出高度的遗传多样性。本研究旨在通过家系分析研究PKD1基因突变的ADPKD患者基因型与表型之间的关系。
    使用外周血DNA的全外显子组测序(WES)分析了八个受ADPKD影响的中国家系。使用Sanger测序验证鉴定的变体,收集和分析患者及其家属的临床资料。
    在所有家系中发现了PKD1中的9个新突变位点,包括c.4247T>G,c.3298_3301delGAGT,c.4798A>G,c.7567G>A,c.11717G>C,c.7703+5G>C,c.3296G>A,c.8515_8516insG,和c.5524C>A.发现这些突变与一系列临床表型有关,包括慢性肾病,高血压,多囊肝.发病年龄和疾病进展在家系间表现出显著的异质性,一些个体表现出早期发病和快速疾病进展,而其他人则无症状或有较轻的疾病症状。遗传模式支持常染色体显性遗传,因为受影响的个体继承了受影响的父母的突变。然而,有携带突变的个体仍然无症状或表现出更温和的疾病表型。
    本研究强调了全面基因型分析在了解ADPKD的进展和预后方面的重要性。新突变位点的鉴定扩展了我们对PKD1基因突变的认识。这些发现有助于更好地理解疾病,并可能对个性化治疗策略有影响。
    UNASSIGNED: Autosomal dominant polycystic kidney disease (ADPKD) is a common genetic disorder. The PKD1 gene is responsible for the majority of ADPKD cases, and the mutations in this gene exhibit high genetic diversity. This study aimed to investigate the association between genotype and phenotype in ADPKD patients with PKD1 gene mutations through pedigree analysis.
    UNASSIGNED: Eight Chinese pedigrees affected by ADPKD were analyzed using whole-exome sequencing (WES) on peripheral blood DNA. The identified variants were validated using Sanger sequencing, and clinical data from the patients and their families were collected and analyzed.
    UNASSIGNED: Nine novel mutation sites in PKD1 were discovered across the pedigrees, including c.4247T > G, c.3298_3301delGAGT, c.4798A > G, c.7567G > A, c.11717G > C, c.7703 + 5G > C, c.3296G > A, c.8515_8516insG, and c.5524C > A. These mutations were found to be associated with a range of clinical phenotypes, including chronic kidney disease, hypertension, and polycystic liver. The age of onset and disease progression displayed significant heterogeneity among the pedigrees, with some individuals exhibiting early onset and rapid disease progression, while others remained asymptomatic or had milder disease symptoms. Inheritance patterns supported autosomal dominant inheritance, as affected individuals inherited the mutations from affected parents. However, there were instances of individuals carrying the mutations who remained asymptomatic or exhibited milder disease phenotypes.
    UNASSIGNED: This study highlights the importance of comprehensive genotype analysis in understanding the progression and prognosis of ADPKD. The identification of novel mutation sites expands our knowledge of PKD1 gene mutations. These findings contribute to a better understanding of the disease and may have implications for personalized therapeutic strategies.
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  • 文章类型: Case Reports
    Pasteurella multocida empyema is rare and easy to be misdiagnosed. An 81-year-old male patient showed symptoms with cough, sputum, and fever for 3 days. Community-acquired pneumonia was diagnosed firstly. After anti-infection treatment, the patient was still in fever. Chest radiography showed pleural effusion, closed thoracic drainage was performed and the reddish-brown fluid was drained out. The second-generation sequencing was performed on pleural fluid and Pasteurella multocida was detected. Pasteurella multocida has strict requirements for growth conditions and it difficult to cultivate. The application of second-generation sequencing is helpful to diagnose the pathogen rapidly.
    多杀巴斯德菌脓胸少见,容易被漏诊。1例81岁患者因“咳嗽、咳痰、发热3 d”入院,诊断为“社区获得性肺炎”,经抗感染治疗后仍发热,胸X射线摄影检查提示胸腔积液,行胸腔闭式引流,引流出红褐色液体,将胸腔积液行二代测序,检测出多杀巴斯德菌。多杀巴斯德菌对生长条件要求比较严格,是一种难以培养的细菌,而二代测序的应用有助于快速诊断病原体。.
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  • 文章类型: Case Reports
    BACKGROUND: Cellulosimicrobium cellulans is a gram-positive filamentous bacterium found primarily in soil and sewage that rarely causes human infection, especially in previously healthy adults, but when it does, it often indicates a poor prognosis.
    METHODS: We report a case of endocarditis and intracranial infection caused by C. cellulans in a 52-year-old woman with normal immune function and no implants in vivo. The patient started with a febrile headache that progressed to impaired consciousness after 20 days, and she finally died after treatment with vancomycin combined with rifampicin. C. cellulans was isolated from her blood cultures for 3 consecutive days after her admission; however, there was only evidence of C. cellulans sequences for two samples in the second-generation sequencing data generated from her peripheral blood, which were ignored by the technicians. No C. cellulans bands were detected in her cerebrospinal fluid by second-generation sequencing.
    CONCLUSIONS: Second-generation sequencing seems to have limitations for certain specific strains of bacteria.
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  • DOI:
    文章类型: Journal Article
    目的:本研究旨在报道一例中国罕见MODY10患者的临床特征和基因突变。
    方法:本研究总结了我院内分泌科一名MODY10患儿的临床资料,并对该患儿的基因测序结果进行了分析和讨论。
    结果:这个孩子是一个两岁的男孩。他访问我们医院的主要原因是“发现高血糖3天”。空腹血糖在8.1-10.7mmol/L之间,餐后两小时血糖在10.6-12.6mmol/L之间糖化血红蛋白为8.5%,空腹C肽为0.6ng/mL,空腹胰岛素2.9μIU/mL,胰岛抗体系列均为阴性。全基因组/外显子测序结果:儿童胰岛素基因的外显子3携带c.309-314delCCAGCTinsGCGC杂合突变。突变是无稽之谈,家庭测序显示突变起源于孩子的母亲。孩子的母亲在1岁时被诊断为糖尿病,23岁时出现双侧眼底出血和右侧视网膜脱离。
    结论:在中国儿童中,胰岛素基因c.309-314delCCAGCTinsGCGC突变可诱导MODY10。对于胰岛自身抗体阴性的糖尿病儿童,基因检测和分析有助于MODY的诊断和分型。
    OBJECTIVE: This study aims to report the clinical features and gene mutation of a rare MODY10 patient in China.
    METHODS: This study summarizes the clinical data of a MODY10 child in the Endocrine Department of our hospital and an analysis and discussion of the results of the gene sequencing of the child.
    RESULTS: The child was a two-year-old boy. The main reason for his visit to our hospital was \"founding hyperglycemia for 3 days\". The fasting blood glucose was between 8.1-10.7 mmol/L, and two-hour postprandial blood glucose was between 10.6-12.6 mmol/L. Glycosylated hemoglobin was 8.5%, fasting C-peptide was 0.6 ng/mL, fasting insulin was 2.9 μIU/mL, and the islet antibody series were all negative. Whole-genome/exon sequencing results: Exon 3 of the insulin gene in the child carried a c.309-314del CCAGCT insGCGC heterozygous mutation. The mutation was a nonsense mutation, and family sequencing showed that the mutation originated from the mother of the child. The mother of the child was diagnosed with diabetes when she was a year old and developed bilateral fundus hemorrhage and right retinal detachment at the age of 23.
    CONCLUSIONS: Among Chinese children, the insulin gene c.309-314del CCAGCT insGCGC mutation may induce MODY10. For diabetic children with a negative islet autoantibody, gene detection and analysis is helpful for the diagnosis and typing of MODY.
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  • 文章类型: Case Reports
    Whole exome sequencing (WES) and bioinformatics analysis were used to investigate potential disease-causing gene mutations in a sudden unexplained death syndrome (SUDS) case after autopsy and pathology tests failed to suggest an obvious disease mechanism. Following whole exome sequencing, a 3-step bioinformatics filtering procedure was carried out to identify possible pathogenic genomic features. Single nucleotide variations (SNVs) were analyzed and ranked by likely mutation impact using various open online tools. After screening, we identified G643S as a putative causative heterozygous mutation in the KCNQ1 gene. This mutation has been reported in abnormalities consistent with SUDS, such as IKs in cardiac myocytes, a condition that predisposes for arrhythmias. Our work demonstrates the application of sequencing technology at the whole exome level for determining potential causes of an otherwise unexplained death.
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