Redox

氧化还原
  • 文章类型: Journal Article
    认识到源头床和悬浮沉积物减轻大湖下游的非点农业磷(P)负荷的能力,但是促进沉积物P保留或内部P释放的特定生物地球化学过程仍然知之甚少。为了阐明这些机制,位于安大略省南部优先流域内的三个源头段,加拿大,在2018-2020年的生长季节进行了采样。这项研究采用了平衡磷测定法以及对传统分水岭养分的新颖评估,氮(N)浓度,沉积物氧化还原,和微生物群落组成。20年的数据显示,在无机肥料和粪肥影响的地点,总磷(TP)和总氮(TN)升高,分别。总的来说,采样地点充当P汇;然而,与参考森林流域相比,农业沉积物的缓冲能力明显较低。通过时间积分采样收集细悬浮沉积物(<63µm),表明无机施肥地点的悬浮负荷已被P饱和,表明与床沉积物相比,磷释放到地表水中的潜力更大。通过沉积物微生物群落的垂直微传感器分析和DNA测序,确定了与不同P源事件相关的位点特异性因素.其中包括整个沉积物界面(SWI)的溶解氧(DO)的快速消耗,以及硝酸盐还原细菌和氨氧化古细菌(AOA)属的存在。这项研究为源头中P的动态提供了有价值的见解,P保持和释放时发光。了解这些过程对于旨在减轻大湖下游磷污染的有效管理策略至关重要。
    The ability of headwater bed and suspended sediments to mitigate non-point agricultural phosphorus (P) loads to the lower Great Lakes is recognized, but the specific biogeochemical processes promoting sediment P retention or internal P release remain poorly understood. To elucidate these mechanisms, three headwater segments located within priority watersheds of Southern Ontario, Canada, were sampled through the growing season of 2018-2020. The study employed equilibrium P assays along with novel assessments of legacy watershed nutrients, nitrogen (N) concentrations, sediment redox, and microbial community composition. 20-year data revealed elevated total P (TP) and total Nitrogen (TN) at an inorganic fertilizer and manure fertilizer-impacted site, respectively. Overall, sampled sites acted as P sinks; however, agricultural sediments exhibited significantly lower buffering capacity compared to a reference forested watershed. Collection of fine suspended sediment (<63 µm) through time-integrated sampling showed the suspended load at the inorganic-fertilized site was saturated with P, indicating a greater potential for P release into surface waters compared to bed sediments. Through vertical microsensor profiling and DNA sequencing of the sediment microbial community, site-specific factors associated with a distinct P-source event were identified. These included rapid depletion of dissolved oxygen (DO) across the sediment water interface (SWI), as well as the presence of nitrate-reducing bacterial and ammonia-oxidizing archaeal (AOA) genera. This research provides valuable insights into the dynamics of P in headwaters, shedding light on P retention and release. Understanding these processes is crucial for effective management strategies aimed at mitigating P pollution to the lower Great Lakes.
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  • 文章类型: Journal Article
    来自大肠杆菌(EcPOX)和植物乳杆菌(LpPOX)的丙酮酸氧化酶都是硫胺素依赖性黄素酶。它们的序列和结构密切相关,它们催化类似的反应——但它们的活性模式不同:LpPOX总是高活性的,EcPOX仅在被脂质或有限的蛋白水解激活时,两者都涉及蛋白质的C端23个残基(“α肽”)。这里,我们将EcPOX的氧化还原诱导的红外(IR)差异光谱与其异常活化机理联系起来。EcPOX的IR差异光谱以蛋白质骨架的贡献为标志,反映主要构象变化。罕见的巯基(-SH)差异信号表明半胱氨酸附近的变化。我们可以将Cys-SH差异信号固定到Cys88和Cys494,它们都远离移动的α肽和氧化还原活性黄素辅因子。然而,当α-肽被蛋白水解去除时,Cys-SH差异信号消失,以及酰胺范围内的几个差异信号。永久激活的EcPOXΔ23的其余IR特征与LpPOX的更简单特征非常相似。α-肽的丢失将催化复合物EcPOX“转化”为催化“更简单”的LpPOX。
    The pyruvate oxidases from Escherichia coli (EcPOX) and Lactobacillus plantarum (LpPOX) are both thiamin-dependent flavoenzymes. Their sequence and structure are closely related, and they catalyse similar reactions-but they differ in their activity pattern: LpPOX is always highly active, EcPOX only when activated by lipids or limited proteolysis, both involving the protein\'s C-terminal 23 residues (the \'α-peptide\'). Here, we relate the redox-induced infrared (IR) difference spectrum of EcPOX to its unusual activation mechanism. The IR difference spectrum of EcPOX is marked by contributions from the protein backbone, reflecting major conformational changes. A rare sulfhydryl (-SH) difference signal indicates changes in the vicinity of cysteines. We could pin the Cys-SH difference signal to Cys88 and Cys494, both being remote from the moving α-peptide and the redox-active flavin cofactor. Yet, when the α-peptide is proteolytically removed, the Cys-SH difference signal disappears, together with several difference signals in the amide range. The remaining IR signature of the permanently activated EcPOXΔ23 is strikingly similar to the simpler signature of LpPOX. The loss of the α-peptide \'transforms\' the catalytically complex EcPOX into the catalytically \'simpler\' LpPOX.
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  • 文章类型: Journal Article
    冷冻保存比其他异地保存方法有几个优点,确实是大多数植物物种长期保护的唯一可行的储存方法。然而,尽管在这一领域取得了许多进展,越来越清楚的是,一些物种没有能力克服冷冻保存过程带来的巨大压力,使用传统的试错方法,使得协议开发变得非常困难。冷冻技术方法最近被认为是一种战略前进的方式,利用对生物系统的深入了解,为开发更有效的冷冻保存方案提供信息。线粒体功能是冷冻生物技术方法的候选模型,因为它不仅支撑着能源供应,还有其他几个决定种质结果的关键因素,包括应激反应,还原-氧化状态,和程序性细胞死亡。在动物细胞和组织冷冻保存方面的广泛研究已经在线粒体健康和冷冻保存存活之间建立了明确的联系,但也表明线粒体通常会受到冷冻保存过程多个方面的损害。已经有证据表明,线粒体功能障碍也可能发生在植物冷冻保存中,这项研究可以通过使用创新技术的考虑应用来大大扩展。已经存在一系列针对线粒体的预防和治疗干预措施,有可能通过线粒体功能改善冷冻保存结果。
    Cryopreservation has several advantages over other ex situ conservation methods, and indeed is the only viable storage method for the long term conservation of most plant species. However, despite many advances in this field, it is increasingly clear that some species are ill-equipped to overcome the intense stress imposed by the cryopreservation process, making protocol development incredibly difficult using traditional trial and error methods. Cryobiotechnology approaches have been recently recognised as a strategic way forward, utilising intimate understanding of biological systems to inform development of more effective cryopreservation protocols. Mitochondrial function is a model candidate for a cryobiotechnological approach, as it underpins not only energy provision, but also several other key determinants of germplasm outcome, including stress response, reduction-oxidation status, and programmed cell death. Extensive research in animal cell and tissue cryopreservation has established a clear link between mitochondrial health and cryopreservation survival, but also indicates that mitochondria are routinely subject to damage from multiple aspects of the cryopreservation process. Evidence is already emerging that mitochondrial dysfunction may also occur in plant cryopreservation, and this research can be greatly expanded by using considered applications of innovative technologies. A range of mitochondria-targeted prophylactic and therapeutic interventions already exist with potential to improve cryopreservation outcomes through mitochondrial function.
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