RNA-binding proteins

RNA 结合蛋白
  • 文章类型: Journal Article
    突变对蛋白质结构的影响通常是局部化的和轻微的。发现可以单手改变蛋白质结构的折叠和/或拓扑结构的突变是罕见的例外。引物同源二聚体阻遏物(Rop)蛋白的A31P突变体就是这样一个例外:这种单突变-并通过两个独立的晶体结构测定证明-可以将规范(左手/全反平行)4-α-Rop的螺旋束转换为新形式(右手/混合平行和反平行束),显示出以前未观察到的“平分U拓扑”。理解这种突变对Rop折叠的戏剧性影响的主要问题是理解它的存在:大多数计算方法似乎都同意突变应该没有明显的影响,大多数能量最小化方法和蛋白质结构预测方案表明该突变与天然Rop结构完全一致,只需要在突变位点进行局部和微小的改变。在这里,我们使用两个长(每个10μs)分子动力学模拟来比较天然Rop的稳定性和动力学与与天然Rop相同但携带此单个Alanine31到脯氨酸突变的假设结构。对这两种轨迹的比较分析令人信服地表明,与能量最小化的迹象相反,但与实验数据一致,这种假设的原生A31P结构是不稳定的,随着它的转向区域几乎完全展开,即使在我们用于本研究的相对温和的320KNpT模拟下。我们讨论了这些发现对A31P突变体折叠的意义,特别是关于提出的双漏斗能源景观模型。
    The effect of mutations on protein structures is usually rather localized and minor. Finding a mutation that can single-handedly change the fold and/or topology of a protein structure is a rare exception. The A31P mutant of the homodimeric Repressor of primer (Rop) protein is one such exception: This single mutation ─and as demonstrated by two independent crystal structure determinations─ can convert the canonical (left-handed/all-antiparallel) 4-α-helical bundle of Rop to a new form (right-handed/mixed parallel and antiparallel bundle) displaying a previously unobserved \"bisecting U\" topology. The main problem with understanding the dramatic effect of this mutation on the folding of Rop is to understand its very existence: Most computational methods appear to agree that the mutation should have had no appreciable effect, with the majority of energy minimization methods and protein structure prediction protocols indicating that this mutation is fully consistent with the native Rop structure, requiring only a local and minor change at the mutation site. Here we use two long (10 μs each) molecular dynamics simulations to compare the stability and dynamics of the native Rop versus a hypothetical structure that is identical with the native Rop but is carrying this single Alanine31 to Proline mutation. Comparative analysis of the two trajectories convincingly shows that, in contrast to the indications from energy minimization ─but in agreement with the experimental data─, this hypothetical native-like A31P structure is unstable, with its turn regions almost completely unfolding, even under the relatively mild 320 K NpT simulations that we have used for this study. We discuss the implication of these findings for the folding of the A31P mutant, especially with respect to the proposed model of a double-funneled energy landscape.
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  • 文章类型: Journal Article
    母细胞性浆细胞样树突状细胞肿瘤(BPDCN)是一种高度侵袭性的恶性肿瘤,主要依靠术后病理明确诊断。患者女,32岁。4个月前右侧鼻塞伴右眼流泪入院,发现右侧鼻腔肿物,镜下形态与多种小圆细胞恶性肿瘤相似,免疫组织化学染色显示CD123、CD56、CD4等阳性;EB病毒编码的RNA原位杂交检测结果阴性;外周血、骨髓穿刺活检未见异常;抗原受体基因克隆性重排PCR检测结果未显示B细胞及T细胞受体克隆性重排;染色体检查:患者为相对正常的整倍体,但EWSR1荧光染色体原位杂交显示伴有EWSR1(22q12)染色体易位,最终诊断为伴EWSR1基因易位的原发性鼻腔鼻窦BPDCN。.
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  • 文章类型: Journal Article
    一名23岁的男子入院,有一年的肌肉无力和萎缩病史。他从18岁起就注意到双手手指的挛缩。检查发现有皮疹,包括天刚性皮疹和Gottron的体征,四肢关节挛缩,吞咽困难,广泛的肌肉无力和明显的肌肉萎缩。血清肌酸激酶水平为272IU/l,肌肉活检显示典型的束周萎缩,但淋巴细胞浸润很少。没有间质性肺炎或恶性肿瘤,但肌肉肌腱显示CT值升高提示钙化或纤维化。根据血清抗体水平诊断为抗核基质蛋白2(NXP-2)抗体阳性的皮肌炎。甲基强的松龙脉冲治疗可改善皮疹和延髓麻痹,但是肌肉无力,萎缩和关节挛缩对治疗有抵抗力。以前没有关于患有抗NXP-2抗体阳性皮肌炎的年轻人的报道,其中关节挛缩早在4年前就变得明显。是皮肌炎鉴别诊断的重要特征。
    A 23-year-old man was admitted to our hospital with a one-year history of muscle weakness and atrophy. He had noticed contractures of the fingers of both hands from the age of 18. Examination revealed a skin rash including heliotrope rash and Gottron\'s sign, joint contractures in the extremities, dysphagia, extensive muscle weakness and marked muscle atrophy. The serum creatine kinase level was 272 ‍IU/l and muscle biopsy showed typical perifascicular atrophy but little lymphocyte invasion. There was no interstitial pneumonia or malignancy, but muscle tendons showed elevated CT values suggesting calcification or fibrosis. Anti-nuclear matrix protein 2 (NXP-2) antibody-positive dermatomyositis was diagnosed on the basis of the serum antibody level. Methylprednisolone pulse therapy ameliorated the skin rash and bulbar palsy, but muscle weakness, atrophy and joint contractures were resistant to the treatment. There have been no previous reports of young adults with anti-NXP-2 antibody-positive dermatomyositis in whom joint contracture became evident as early as 4 years beforehand, which is a important feature for differential diagnosis of dermatomyositis.
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  • 文章类型: Journal Article
    目的:探讨胰岛素样生长因子-II(IGF2)基因的相关性,胰岛素样生长因子-II受体(IGF2R)基因和胰岛素样生长因子-II结合蛋白2(IGF2BP2)基因多态性与中国人群妊娠期糖尿病(GDM)易感性的关系.
    方法:本病例对照研究共招募了1703名孕妇(835名GDM和868名非GDM)。所有参与者于2018年1月15日至2019年3月31日在湖北省妇幼保健院24-28周进行产前75g口服葡萄糖耐量试验(OGTT)检查。在SequenomMassARRAY平台上进行候选SNP(IGF2rs680,IGF2Rrs416572,IGF2BP2rs4402960,rs1470579,rs1374910,rs11705701,rs6777038,rs16860234,rs7651090)的基因分型。进行Logistic回归分析以探讨候选SNP与GDM风险之间的关系。此外,采用多因素降维(MDR)方法探讨基因-基因相互作用对GDM风险的影响。
    结果:GDM组和非GDM组的年龄分布有显著差异,孕前BMI,文化程度及糖尿病家族史(P<0.05)。在调整了年龄后,孕前BMI,教育水平和糖尿病家族史,候选SNPs多态性与GDM风险无显著相关性(P>0.05)。此外,候选SNPs中GDM风险无基因-基因交互作用(P>0.05)。然而,rs6777038CT携带者的空腹血糖(FBG)水平明显低于TT携带者(4.69±0.69vs.5.03±1.57mmol/L,P<0.01),rs6777038CC和CT基因型携带者的OGTT-2h水平明显低于TT基因型携带者(8.10±1.91和8.08±1.87vs.8.99±2.90mmol/L,P<0.01)。
    结论:IGF2rs680,IGF2Rrs416572,IGF2BP2rs4402960,rs1470579,rs11705701,rs6777038,rs16860234,rs7651090多态性与武汉地区GDM风险无显著相关性,中国。需要进一步的多中心研究来证实这些结果。
    OBJECTIVE: To investigate the associations of Insulin-like growth factor-II (IGF2) gene, Insulin-like growth factor-II receptor (IGF2R) gene and Insulin-like growth factor-II binding protein 2 (IGF2BP2) gene polymorphisms with the susceptibility to gestational diabetes mellitus (GDM) in Chinese population.
    METHODS: A total of 1703 pregnant women (835 GDM and 868 Non-GDM) were recruited in this case-control study. All participants underwent prenatal 75 g oral glucose tolerance test (OGTT) examinations during 24-28 gestational weeks at the Maternal and Child Health Hospital of Hubei Province from January 15, 2018 to March 31, 2019. Genotyping of candidate SNPs (IGF2 rs680, IGF2R rs416572, IGF2BP2 rs4402960, rs1470579, rs1374910, rs11705701, rs6777038, rs16860234, rs7651090) was performed on Sequenom MassARRAY platform. Logistic regression analysis was conducted to investigate the associations between candidate SNPs and risk of GDM. In addition, multifactor dimensionality reduction (MDR) method was applied to explore the effects of gene-gene interactions on GDM risk.
    RESULTS: There were significant distribution differences between GDM group and non-GDM group in age, pre-pregnancy BMI, education level and family history of diabetes (P < 0.05). After adjusted for age, pre-pregnancy BMI, education level and family history of diabetes, there were no significant associations of the candidate SNPs polymorphisms and GDM risk (P > 0.05). Furthermore, there were no gene-gene interactions on the GDM risk among the candidate SNPs (P > 0.05). However, the fasting blood glucose (FBG) levels of rs6777038 CT carriers were significantly lower than TT carriers (4.69±0.69 vs. 5.03±1.57 mmol/L, P < 0.01), and the OGTT-2h levels of rs6777038 CC and CT genotype carriers were significantly lower than TT genotype carriers (8.10±1.91 and 8.08±1.87 vs. 8.99±2.90 mmol/L, P < 0.01).
    CONCLUSIONS: IGF2 rs680, IGF2R rs416572, IGF2BP2 rs4402960, rs1470579, rs11705701, rs6777038, rs16860234, rs7651090 polymorphisms were not significantly associated with GDM risk in Wuhan, China. Further lager multicenter researches are needed to confirm these results.
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  • 文章类型: Case Reports
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  • 文章类型: Case Reports
    UPF3B编码无义转录物3B蛋白的调节子,无义介导的mRNA衰变途径的核心成员,保护细胞免受具有过早终止密码子的转录本的潜在有害作用。UPF3B基因的半合子变异导致一系列神经精神问题,包括智力障碍,自闭症谱系障碍,注意缺陷多动障碍,和精神分裂症/儿童精神分裂症(COS)。迄今为止报告的患者数量非常有限,通常缺乏对这种超罕见综合征的广泛表型和神经放射学描述。在这里,我们报告了三个携带UPF3B变体的受试者,呈现可变的临床图片,包括认知障碍,中枢低张力,和综合征特征。患者1和2具有新的UPF3B变体-p。(Lys207*)和p。(Asp429Serfs*27),分别-而p.(Arg225Lysfs*229)变体,在文献中已经报道了患者3中的鉴定。我们患者的新特征以小头畸形为代表,脸中部发育不全,大脑畸形.然后,我们回顾了相关文献,并将以前报道的受试者与我们的病例进行了比较,在这种新出现的情况下,为基因型-表型相关性提供可能的见解。总的来说,对三名携带UPF3B变异的患者进行详细的表型描述不仅有助于扩大UPF3B相关疾病的基因型和表型谱,还可以改善受影响个体的临床管理。
    UPF3B encodes the Regulator of nonsense transcripts 3B protein, a core-member of the nonsense-mediated mRNA decay pathway, protecting the cells from the potentially deleterious actions of transcripts with premature termination codons. Hemizygous variants in the UPF3B gene cause a spectrum of neuropsychiatric issues including intellectual disability, autism spectrum disorder, attention deficit hyperactivity disorder, and schizophrenia/childhood-onset schizophrenia (COS). The number of patients reported to date is very limited, often lacking an extensive phenotypical and neuroradiological description of this ultra-rare syndrome. Here we report three subjects harboring UPF3B variants, presenting with variable clinical pictures, including cognitive impairment, central hypotonia, and syndromic features. Patients 1 and 2 harbored novel UPF3B variants-the p.(Lys207*) and p.(Asp429Serfs*27) ones, respectively-while the p.(Arg225Lysfs*229) variant, identified in Patient 3, was already reported in the literature. Novel features in our patients are represented by microcephaly, midface hypoplasia, and brain malformations. Then, we reviewed pertinent literature and compared previously reported subjects to our cases, providing possible insights into genotype-phenotype correlations in this emerging condition. Overall, the detailed phenotypic description of three patients carrying UPF3B variants is useful not only to expand the genotypic and phenotypic spectrum of UPF3B-related disorders, but also to ameliorate the clinical management of affected individuals.
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  • 文章类型: Journal Article
    聚谷氨酰胺脊髓小脑共济失调(PolyQSCAs)代表一组单基因疾病,其中扩大的聚谷氨酰胺重复序列产生突变的蛋白质。异常膨胀的聚谷氨酰胺蛋白产生聚集体和有毒物质,导致神经元功能障碍和神经元死亡。这些疾病的主要症状包括进行性共济失调,运动功能障碍,动眼损伤,和吞咽问题。如今,目前的治疗仅限于对症缓解,并且没有现有的治疗策略可以减少或阻止疾病进展。尽管这些疾病的起源与聚谷氨酰胺诱导的毒性有关,RNA毒性最近在polyQSCAs分子发病机制中获得了相关性。因此,对RNA代谢的研究越来越关注,特别是在RNA结合蛋白(RBP)上。本综述概述了RNA代谢,暴露不同的过程和所涉及的主要RBP。我们还探索了PolyQSCA中RBP失调的机制。最后,针对RNA代谢的可能疗法被提出作为逆转神经病理异常和减轻身体症状的策略。
    Polyglutamine spinocerebellar ataxias (PolyQ SCAs) represent a group of monogenetic diseases in which the expanded polyglutamine repeats give rise to a mutated protein. The abnormally expanded polyglutamine protein produces aggregates and toxic species, causing neuronal dysfunction and neuronal death. The main symptoms of these disorders include progressive ataxia, motor dysfunction, oculomotor impairment, and swallowing problems. Nowadays, the current treatments are restricted to symptomatic alleviation, and no existing therapeutic strategies can reduce or stop the disease progression. Even though the origin of these disorders has been associated with polyglutamine-induced toxicity, RNA toxicity has recently gained relevance in polyQ SCAs molecular pathogenesis. Therefore, the research\'s focus on RNA metabolism has been increasing, especially on RNA-binding proteins (RBPs). The present review summarizes RNA metabolism, exposing the different processes and the main RBPs involved. We also explore the mechanisms by which RBPs are dysregulated in PolyQ SCAs. Finally, possible therapies targeting the RNA metabolism are presented as strategies to reverse neuropathological anomalies and mitigate physical symptoms.
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  • 文章类型: Review
    软组织肿瘤的诊断通常具有挑战性。鉴于实体数量众多,通常具有非特异性或重叠形态。尽管形态学在诊断过程中仍然起着重要的作用,通常需要进行包括免疫组织化学和分子遗传学在内的其他研究才能得出正确的诊断.我们报告一例61岁男性右髋部皮下肿瘤,手术切除的.肿瘤由轻度至中度细胞粘液样结节中的均匀平淡的梭形细胞组成,在有限的胶原化区域和低级别纤维粘液样肉瘤的诊断。最初诊断后3年,肿瘤复发,新样本显示为高级别圆形细胞肉瘤,经过长时间的免疫组织化学检查后,残留的低级别区域有限,并且具有非特异性免疫特征。分子分析表明ZC3H7B::BCOR融合。子宫外发生ZC3H7B::BCOR融合的肉瘤极为罕见。提供了对以前发表的案例的全面审查,并对实体的分类进行了简短的讨论,以及有关病变形态和免疫特征的数据。该病例还强调了对具有异常免疫组织化学或形态学特征的软组织肿瘤进行扩展工作的必要性,以准确评估其生物学潜力。
    Diagnosis of soft tissue tumors is often challenging, given the large number of entities, often with non-specific or overlapping morphology. Although morphology still plays an important part in diagnostic process, additional studies including immunohistochemistry and molecular genetics are often needed to arrive at correct diagnosis. We report a case of 61-year-old male with subcutaneous tumor in right hip area, that was surgically removed. The tumor was composed of uniform bland spindle cells in mild to moderately cellular myxoid nodules, with limited areas of collagenization and the diagnosis of low grade fibromyxoid sarcoma was made. The tumor recurred 3 years after the initial diagnosis and the new sample showed a high-grade round cell sarcoma with limited residual low-grade areas and non-specific immunoprofile after extended immunohistochemical work-up. Molecular analysis demonstrated ZC3H7B::BCOR fusion. Sarcomas with ZC3H7B::BCOR fusion occurring outside of uterus are exceedingly rare. A comprehensive review of previously published cases and a short discussion about classification of the entity is provided, together with data about morphology and immunoprofile of the lesions. The case also underscores the necessity of extended work up of soft tissue tumors with unusual immunohistochemical or morphological features in order to accurately assess their biological potential.
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  • 文章类型: Case Reports
    已在MiT家族易位肾细胞癌以及血管周围上皮样细胞肿瘤(PEComas)中描述了NONO::TFE3融合。已知PEComas表达生肌和黑素细胞标记,但从未报道过SOX10和p63阳性。我们报告了两种在形态和分子上符合PEComas的原发性皮肤肿瘤,两者都拥有NONO::TFE3融合,但具有不寻常的SOX10和p63阳性免疫表型。一个案例是在一个80岁的男性手指上,另一个在72岁的女性大腿上。两者都是界限清楚的多结节性真皮肿瘤,由单调的上皮样细胞至梭状细胞的巢组成,细胞质苍白至液泡状,其中一些排列在血管周围。两种肿瘤均为SOX10,S100和p63阳性,局部为Melan-A阳性,生肌标记呈阴性。关于原发性皮肤PEComas的分子发现的数据很少。虽然NONO::TFE3融合已经在皮肤外PEComas中被发现,在原发性皮肤病例中从未报道过。我们认为这些病例代表了以前未描述的皮肤肿瘤亚型,该亚型显示了黑素细胞标志物的一些免疫表型表达,我们将这些病例命名为NONO::TFE3融合皮肤上皮样和梭形细胞肿瘤。Further,我们提出了一个问题,这个肿瘤是否应该因为它的形态而属于PEComa的范畴,黑素细胞标志物的部分表达,以及NONO::TFE3融合的存在,或者这些肿瘤是否代表了一个单独的新类型的肿瘤,因为SOX10和p63的免疫表型表达对于PEComas来说是不寻常的。
    The NONO::TFE3 fusion has been described in MiT family translocation renal cell carcinomas as well as extracutaneous perivascular epithelioid cell tumors (PEComas). PEComas are known to express myogenic and melanocytic markers but SOX10 and p63 positivity has never been reported. We report two primary cutaneous tumors that morphologically and molecularly fit PEComas, both harboring the NONO::TFE3 fusion, but with an unusual immunophenotype of SOX10 and p63 positivity. One case was on an 80-year-old male\'s finger, and the other one was on a 72-year-old female\'s thigh. Both were well-circumscribed multinodular dermal tumors composed of nests of monotonous epithelioid to spindled cells with pale to vacuolated cytoplasm, some of which were arranged around blood vessels. Both tumors were positive for SOX10, S100, and p63, focally positive for Melan-A, and negative for myogenic markers. There are very little data regarding the molecular findings of primary cutaneous PEComas. While the NONO::TFE3 fusion has been identified in extracutaneous PEComas, it has never been reported in primary cutaneous cases. We believe these cases represent a previously undescribed subtype of cutaneous tumor which shows some immunophenotypic expression of melanocytic markers and we named these cases NONO::TFE3 fusion cutaneous epithelioid and spindle cell tumor. Further, we raise the question of whether this tumor should fall under the rubric of PEComa because of its morphology, partial expression of melanocytic markers, and the presence of the NONO::TFE3 fusion, or whether these tumors represent a separate novel class of tumors since the immunophenotypic expression of SOX10 and p63 is unusual for PEComas.
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  • 文章类型: Review
    伴有ZC3H7B-BCOR融合的高级别子宫内膜间质肉瘤很少见。它们主要位于子宫内膜,具有形态学特征,其特征是梭形细胞随意排列,具有轻度至中度异型,丰富的粘液样基质,高有丝分裂指数,和舌状/推进模式的子宫肌层侵入。此外,通常不存在常规或变异型低度子宫内膜间质肉瘤.临床上,与低度级别的子宫内膜间质肉瘤相比,其分期较高,预后较差.鉴于报告的病例数量有限,我们描述了ZC3H7B-BCOR融合高级别子宫内膜间质肉瘤的病例,最初在子宫切除术标本上诊断为低级别子宫内膜间质肉瘤,其基础是子宫内膜间质瘤显示舌状肌层和淋巴血管浸润,微小细胞学异型性,低有丝分裂活性(0-1/10高功率场),圆形/梭形细胞成分和免疫组织化学染色结果(CD10、雌激素受体、孕激素受体,细胞周期蛋白D1呈局灶性阳性)。在病理诊断时,她是Ia阶段,管理保守。随后的分子分析揭示了ZC3H7B(外显子10)-BCOR(BCL-6共阻遏物)(外显子7)基因融合。关于后续行动,从诊断开始37个月时,她没有显示疾病的证据。该病例报告扩展了ZC3H7B-BCOR融合高级ESS的形态谱,其中包括壁内位置,与LG-ESS相似的形态学和免疫表型特征,以及圆形和梭形细胞成分的存在。此案例还强调了分子分析在ESS正确分类中的价值。
    High-grade endometrial stromal sarcomas with ZC3H7B-BCOR fusion are rare. They are predominantly located in the endomyometrium, with morphologic features characterized as haphazardly arranged fascicles of spindle cells with mild to moderate atypia, abundant myxoid matrix, high mitotic index, and tongue-like/pushing patterns of myometrial invasion. Furthermore, conventional or variant low-grade endometrial stromal sarcomas are often not present. Clinically, they present at a higher stage and are associated with worse prognosis compared with low-grade endometrial stromal sarcoma. Given the limited number of reported cases, we describe the case of a ZC3H7B-BCOR fusion high-grade endometrial stromal sarcoma initially diagnosed on the hysterectomy specimen as low-grade endometrial stromal sarcoma based on an endometrial stromal tumor showing tongue-like myometrial and lymphovascular invasion, minimal cytologic atypia, low-mitotic activity (0-1/10 high-power field), round/spindle cell component and immunohistochemical stain results (positive for CD10, estrogen receptor, progesterone receptor, and focally positive for cyclin D1). At the time of pathologic diagnosis, she was Stage Ia and managed conservatively. Subsequent molecular analysis revealed a ZC3H7B (exon 10)- BCOR (BCL-6 corepressor) (exon 7) gene fusion. On follow-up, she showed no evidence of disease at 37 months from the time of diagnosis. This case report expands the morphologic spectrum of ZC3H7B-BCOR fusion high-grade ESS, which includes an intramural location, morphologic and immunophenotypic features similar to LG-ESS, as well as the presence of round and spindle cell components. This case also underscores the value of molecular analysis in the proper classification of ESS.
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