Polygenic inheritance

  • 文章类型: Journal Article
    目的:顺铂诱导耳毒性的基因型-表型关系尚不清楚。通过评估初始顺铂给药后畸变产物耳声发射(DPOAE)水平的早期变化,我们旨在区分患者对顺铂诱导的耳毒性的易感性,并阐明其遗传背景。
    方法:前瞻性横断面研究。
    方法:日本三级转诊医院。
    方法:26例头颈部肿瘤患者接受3个周期的100mg/m2顺铂放化疗。
    方法:重复纯音测听和DPOAE测量,并进行血液采样以进行DNA提取。根据DPOAE水平变化是否超过21天测试间隔的相应参考限值,将患者分为早期耳毒性存在或不存在。
    方法:每个顺铂周期后的听力阈值,其他不良事件的严重程度,比较了顺铂诱导的耳毒性相关基因的多态性。
    结果:14例患者出现早期耳毒性,12例患者无早期耳毒性。在整个治疗过程中,DPOAE的耳毒性存在与频率≥2kHz的听力损失的更大进展相关,并且与耳毒性缺失相比,耳毒性等级更高。耳毒性进一步与≥2级恶心相关。耳毒性的存在与NFE2L2rs6721961的GSTT1无效基因型和G等位基因在遗传上相关,而耳毒性的缺失与GSTM1无效基因型相关。在GSTT1空和rs6721961的T/G或G/G变体的组合基因型模式中,听力损失的剂量依赖性进展最大。
    结论:早期DPOAE变化反映了顺铂诱导耳毒性的遗传易感性。抗氧化剂防御系统的遗传性功能不足会导致严重的顺铂引起的听力损失和恶心。
    OBJECTIVE: The genotype-phenotype relationship in cisplatin-induced ototoxicity remains unclear. By assessing early shifts in distortion product otoacoustic emission (DPOAE) levels after initial cisplatin administration, we aimed to discriminate patients\' susceptibility to cisplatin-induced ototoxicity and elucidate their genetic background.
    METHODS: A prospective cross-sectional study.
    METHODS: Tertiary referral hospital in Japan.
    METHODS: Twenty-six patients with head and neck cancer were undergoing chemoradiotherapy with three cycles of 100 mg/m2 cisplatin.
    METHODS: Repetitive pure-tone audiometry and DPOAE measurements, and blood sampling for DNA extraction were performed. Patients were grouped into early ototoxicity presence or absence based on whether DPOAE level shifts exceeded the corresponding reference limits of the 21-day test interval.
    METHODS: Hearing thresholds after each cisplatin cycle, severity of other adverse events, and polymorphisms in cisplatin-induced ototoxicity-associated genes were compared.
    RESULTS: Early ototoxicity was present in 14 and absent in 12 patients. Ototoxicity presence on DPOAEs was associated with greater progression of hearing loss in frequencies ≥2 kHz throughout therapy and with higher ototoxicity grades compared with ototoxicity absence. Ototoxicity was further associated with grade ≥2 nausea. Ototoxicity presence was genetically associated with the GSTT1 null genotype and G-allele of NFE2L2 rs6721961, whereas ototoxicity absence was associated with the GSTM1 null genotype. Dose-dependent progression of hearing loss was the greatest in the combined genotype pattern of GSTT1 null and the T/G or G/G variants of rs6721961.
    CONCLUSIONS: Early DPOAE changes reflected genetic vulnerability to cisplatin-induced ototoxicity. Hereditary insufficiency of the antioxidant defense system causes severe cisplatin-induced hearing loss and nausea.
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  • 文章类型: Journal Article
    先天性心脏病(CHD)是活出生儿童中最常见的先天性异常。与综合征性CHD(SCHD)相比,孤立性CHD(ICHD)的遗传基础复杂,潜在的致病机制似乎错综复杂,还没有完全理解。除了罕见的孟德尔病,大多数ICHD都假定体细胞镶嵌或复杂的多因素遗传结构。我们使用从心脏组织中提取的先证者DNA对73个亲代ICHD三重奏进行了外显子组测序(ES)。我们在发育中的人类心脏中表达的心脏相关基因的计算机预测中,鉴定了六个种系从头变异和625种系罕见遗传变异,具有“破坏性”。没有CHD相关的体细胞变异。传输不平衡测试(TDT)和关联测试(AT)没有统计学上的显着结果,除了纤毛基因中的错义变异的AT。体细胞突变不是ICHD的常见原因。罕见的从头和遗传性蛋白质损伤变异可能有助于ICHD,可能是寡基因或多基因疾病模型的一部分。TDT和AT未能提供信息结果,可能是由于缺乏力量,但为未来更大的队列研究提供了框架.总的来说,在个别ICHD病例中,ES对心脏组织的诊断价值有限.
    Congenital heart defects (CHD) are the most common congenital anomalies in liveborn children. In contrast to syndromic CHD (SCHD), the genetic basis of isolated CHD (ICHD) is complex, and the underlying pathogenic mechanisms appear intricate and are incompletely understood. Next to rare Mendelian conditions, somatic mosaicism or a complex multifactorial genetic architecture are assumed for most ICHD. We performed exome sequencing (ES) in 73 parent-offspring ICHD trios using proband DNA extracted from cardiac tissue. We identified six germline de novo variants and 625 germline rare inherited variants with \'damaging\' in silico predictions in cardiac-relevant genes expressed in the developing human heart. There were no CHD-relevant somatic variants. Transmission disequilibrium testing (TDT) and association testing (AT) yielded no statistically significant results, except for the AT of missense variants in cilia genes. Somatic mutations are not a common cause of ICHD. Rare de novo and inherited protein-damaging variants may contribute to ICHD, possibly as part of an oligogenic or polygenic disease model. TDT and AT failed to provide informative results, likely due to the lack of power, but provided a framework for future studies in larger cohorts. Overall, the diagnostic value of ES on cardiac tissue is limited in individual ICHD cases.
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  • 文章类型: Journal Article
    Alirocumab, an antibody that blocks PCSK9 (proprotein convertase subtilisin/kexin type 9), was associated with reduced major adverse cardiovascular events (MACE) and death in the ODYSSEY OUTCOMES trial (Evaluation of Cardiovascular Outcomes After an Acute Coronary Syndrome During Treatment With Alirocumab). In this study, higher baseline levels of low-density lipoprotein cholesterol (LDL-C) predicted greater benefit from alirocumab treatment. Recent studies indicate high polygenic risk scores (PRS) for coronary artery disease (CAD) identify individuals at higher risk who derive increased benefit from statins. We performed post hoc analyses to determine whether high PRS for CAD identifies higher-risk individuals, independent of baseline LDL-C and other known risk factors, who might derive greater benefit from alirocumab treatment.
    ODYSSEY OUTCOMES was a randomized, double-blind, placebo-controlled trial comparing alirocumab or placebo in 18 924 patients with acute coronary syndrome and elevated atherogenic lipoproteins despite optimized statin treatment. The primary endpoint (MACE) comprised death of CAD, nonfatal myocardial infarction, ischemic stroke, or unstable angina requiring hospitalization. A genome-wide PRS for CAD comprising 6 579 025 genetic variants was evaluated in 11 953 patients with available DNA samples. Analysis of MACE risk was performed in placebo-treated patients, whereas treatment benefit analysis was performed in all patients.
    The incidence of MACE in the placebo group was related to PRS for CAD: 17.0% for high PRS patients (>90th percentile) and 11.4% for lower PRS patients (≤90th percentile; P<0.001); this PRS relationship was not explained by baseline LDL-C or other established risk factors. Both the absolute and relative reduction of MACE by alirocumab compared with placebo was greater in high versus low PRS patients. There was an absolute reduction by alirocumab in high versus low PRS groups of 6.0% and 1.5%, respectively, and a relative risk reduction by alirocumab of 37% in the high PRS group (hazard ratio, 0.63 [95% CI, 0.46-0.86]; P=0.004) versus a 13% reduction in the low PRS group (hazard ratio, 0.87 [95% CI, 0.78-0.98]; P=0.022; interaction P=0.04).
    A high PRS for CAD is associated with elevated risk for recurrent MACE after acute coronary syndrome and a larger absolute and relative risk reduction with alirocumab treatment, providing an independent tool for risk stratification and precision medicine.
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  • 文章类型: Journal Article
    遗传性全身性癫痫(GGE)(儿童失神癫痫(CAE),青少年肌阵挛性癫痫(JME)和全身性强直阵挛性癫痫(GTCS)的癫痫主要由遗传因素决定。由于在常染色体显性GGE的罕见家族中很少发现突变,大多数患者怀疑多基因遗传.最近对美国或欧洲散发性病例的大型队列的研究表明,易感基因很多,尽管它们的变异很少,使他们难以识别。这里,我们报道了30个突尼斯GGE家族的临床和遗传特征,包括71例GGE患者。表型接近散发性病例。19个谱系具有均匀类型的GGE(JME-CAE-CGTS),11结合了这些癫痫综合征。使用30个候选基因的靶向小组在先证中选择罕见的非同义变体,并在家族中确定它们的分离。分子研究涉及不同的基因,主要是CACNA1H和MAST4。在某些家系中,至少两个变体在不同基因中的分离与寡基因遗传的假设相符,这与近亲先证者的频率相对较低。由于至少有2个易感基因可能被不同的人群共享,涉及大多数突尼斯GGE家族的遗传因素仍有待发现。在具有同质GGE类型的家庭中,他们的识别应该更容易,其中可以怀疑家族内遗传同质性。
    Genetic generalized epilepsies (GGE) (childhood absence epilepsy (CAE), juvenile myoclonic epilepsy (JME) and epilepsy with generalized tonic-clonic seizures (GTCS)) are mainly determined by genetic factors. Since few mutations were identified in rare families with autosomal dominant GGE, a polygenic inheritance was suspected in most patients. Recent studies on large American or European cohorts of sporadic cases showed that susceptibility genes were numerous although their variants were rare, making their identification difficult. Here, we reported clinical and genetic characteristics of 30 Tunisian GGE families, including 71 GGE patients. The phenotype was close to that in sporadic cases. Nineteen pedigrees had a homogeneous type of GGE (JME-CAE-CGTS), and 11 combined these epileptic syndromes. Rare non-synonymous variants were selected in probands using a targeted panel of 30 candidate genes and their segregation was determined in families. Molecular studies incriminated different genes, mainly CACNA1H and MAST4. The segregation of at least two variants in different genes in some pedigrees was compatible with the hypothesis of an oligogenic inheritance, which was in accordance with the relatively low frequency of consanguineous probands. Since at least 2 susceptibility genes were likely shared by different populations, genetic factors involved in the majority of Tunisian GGE families remain to be discovered. Their identification should be easier in families with a homogeneous type of GGE, in which an intra-familial genetic homogeneity could be suspected.
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