人们对肽激素与受体相互作用的构象知之甚少,原因有很多:肽激素在溶液中具有众所周知的灵活性,它们的受体特别复杂,并且有强有力的证据表明导致激活的受体-配体相互作用是一个动态过程。先前已从四种受约束的GnRH拮抗剂的溶液结构中获得了对十肽促性腺激素释放激素(GnRH)的活性构象的见解。环状(1-10)[Ac-Delta(3)-Pro(1),DCpa(2),DTrp(3,6),NMeLeu++(7),betaAla(10)]GnRH(1),cyclo(4-10)[Ac-Delta(3)Pro(1),DFpa(2),DTrp(3),Asp(4),DNal(6),Dpr(10)]GnRH(2),双环(4-10/5-8)[Ac-DNal(1),DCpa(2),DTrp(3),Asp(4),Glu(5),DArg(6),Lys(8),Dpr(10)]GnRH(3),和双环(4-10/5-5\'-8)[Ac-DNal(1),DCpa(2),DMAB(3),Asp(4),Glu(5)(Gly),DArg(6),Dbu(8),Dpr(10)]GnRH(4).然而,N末端三肽在高效(K(i)<0.4nM)2-4中的精确位置仍然不清楚,因为在该区域缺乏限制。新发现的有效(K(i)=0.24nM)双环(1-1\'-5/4-10)[Ac-Glu(1)(Gly)的NMR结构,DCpa(2),DTrp(3),P(4)Dbu(5),DNal(6),Dpr(10)]GnRH(5)现在允许定义该区域的构象。化合物2-5的组合计算分析(共识强迫),旨在探索它们可获得的共同构象,这些构象同时与对应于每种化合物的NMR数据一致,导致GnRH药效团的一致结构模型。该模型与非肽GnRH模拟物T-98475的结构共享一些共同特征。在比较研究的过程中,确定了作者提出的两个额外的接触点,表明该模型具有预测价值。
Little is known of the conformation of peptide hormones as they interact with their receptors for a number of reasons: peptide hormones are notoriously flexible in solution, their receptors are particularly complex, and there is strong evidence that receptor-ligand interaction leading to activation is a dynamic process. Insights into the active conformation of the decapeptide gonadotropin releasing hormone (GnRH) have been obtained previously from the solution structures of four constrained GnRH antagonists ¿cyclo(1-10)[Ac-Delta(3)-Pro(1),DCpa(2),DTrp(3,6),NMeLeu+ ++(7), betaAla(10)]GnRH (1), cyclo(4-10)[Ac-Delta(3)Pro(1),DFpa(2),DTrp(3), Asp(4),DNal(6),Dpr(10)]GnRH (2), dicyclo(4-10/5-8)[Ac-DNal(1), DCpa(2),DTrp(3),Asp(4),Glu(5),DArg(6),Lys(8),Dpr (10)]GnRH (3), and dicyclo(4-10/5-5\'-8)[Ac-DNal(1),DCpa(2),DPal(3), Asp(4),Glu(5)(Gly), DArg(6),Dbu(8),Dpr(10)]GnRH (4)¿. However, the precise location of the N-terminal tripeptide in the highly potent (K(i) < 0.4 nM) 2-4 remained unclear due to the lack of constraints in this region. The NMR structure of the newly discovered and potent (K(i) = 0.24 nM) dicyclo(1-1\'-5/4-10)[Ac-Glu(1)(Gly),DCpa(2),DTrp(3),As p(4),Dbu(5), DNal(6),Dpr(10)]GnRH (5) now allows the definition of the conformation of this region. A combined computational analysis (
consensus forcing) of compounds 2-5, designed to explore the common conformations available to them that are simultaneously consistent with the NMR data corresponding to each compound, leads to a
consensus structural model for the GnRH pharmacophore. This model shares some common features with the structure of the nonpeptidic GnRH mimetic T-98475. In the course of that comparative study, two additional contact points to those proposed by the authors are identified, suggesting that this model has predictive value.