Opportunistic pathogen

机会性病原体
  • 文章类型: Journal Article
    背景:无色杆菌属。是机会性病原体,主要感染免疫功能低下患者和囊性纤维化(CF)患者,由于固有耐药性和获得性抗菌素耐药性的可能性,被认为是难以治疗的病原体。物种鉴定仍然具有挑战性,导致对每个分类单元中的抗性描述不精确。头孢多醇是一种广谱铁载体头孢菌素,越来越多地用于治疗嗜酸性杆菌感染,其敏感性数据仍然很少。我们旨在描述一组包含CF或非CF(NCF)患者的不同物种和分离来源的无色杆菌菌株对头孢地洛的敏感性。
    方法:我们研究了230株无色杆菌菌株(来自CF,来自NCF患者的163)通过基于nrdA基因的分析鉴定,根据哌拉西林他唑巴坦的药敏数据,美罗培南和甲氧苄啶-磺胺甲恶唑。根据EUCAST指南,使用肉汤微量稀释参考方法确定头孢地洛的最低抑制浓度(MIC)。
    结果:菌株属于15种。A.xylosoxidans代表了主要物种(71.3%)。MIC范围为≤0.015至16mg/L,MIC50/90总体≤0.015/0.5mg/L,而27个(11.7%)美罗培南非敏感菌株为0.125/2mg/L。头孢地醇的MIC与CF/NCF的起源或物种无关,尽管木氧氧曲霉的MIC在统计学上低于整体上认为的其他物种的MIC。考虑到EUCAST非物种相关断点(2mg/L),228株(99.1%)对头孢地洛敏感。两种头孢地洛耐药菌株(A.CF患者的xylosoxidans)占美罗培南非易感菌株的3.7%和MDR菌株的12.5%。
    结论:头孢地洛对大量准确鉴定的无色杆菌菌株表现出优异的体外活性,不论物种和起源。
    BACKGROUND: Achromobacter spp. are opportunistic pathogens, mostly infecting immunocompromised patients and patients with cystic fibrosis (CF) and considered as difficult-to-treat pathogens due to both intrinsic resistance and the possibility of acquired antimicrobial resistance. Species identification remains challenging leading to imprecise descriptions of resistance in each taxon. Cefiderocol is a broad-spectrum siderophore cephalosporin increasingly used in the management of Achromobacter infections for which susceptibility data remain scarce. We aimed to describe the susceptibility to cefiderocol of a collection of Achromobacter strains encompassing different species and isolation sources from CF or non-CF (NCF) patients.
    METHODS: We studied 230 Achromobacter strains (67 from CF, 163 from NCF patients) identified by nrdA gene-based analysis, with available susceptibility data for piperacillin-tazobactam, meropenem and trimethoprim-sulfamethoxazole. Minimal inhibitory concentrations (MICs) of cefiderocol were determined using the broth microdilution reference method according to EUCAST guidelines.
    RESULTS: Strains belonged to 15 species. A. xylosoxidans represented the main species (71.3%). MICs ranged from ≤ 0.015 to 16 mg/L with MIC50/90 of ≤ 0.015/0.5 mg/L overall and 0.125/2 mg/L against 27 (11.7%) meropenem-non-susceptible strains. Cefiderocol MICs were not related to CF/NCF origin or species although A. xylosoxidans MICs were statistically lower than those of other species considered as a whole. Considering the EUCAST non-species related breakpoint (2 mg/L), 228 strains (99.1%) were susceptible to cefiderocol. The two cefiderocol-resistant strains (A. xylosoxidans from CF patients) represented 3.7% of meropenem-non-susceptible strains and 12.5% of MDR strains.
    CONCLUSIONS: Cefiderocol exhibited excellent in vitro activity against a large collection of accurately identified Achromobacter strains, irrespective of species and origin.
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  • 文章类型: Journal Article
    为了研究纹状体棒状杆菌作为医院病原体感染难以愈合的外周伤口,比如皮肤伤口,软组织脓肿和骨髓炎。截至2023年,医学界已收到有关出现全身和中枢感染风险的警报;另一方面,有关外周皮肤区域的文献仍然很少。
    在这项研究中,对两组感染相似病变的患者进行比较:一组存在棒状杆菌,另一个没有。
    总共,从62名患者和131个样品中培养纹状体棒状杆菌。纹状体棒状杆菌感染与以下疾病的存在密切相关:足溃疡;静脉性腿部溃疡;步行改变和/或足负荷改变;外周血管和动脉疾病;住院;恶性肿瘤;脊髓损伤;以及最近使用抗生素(所有关联的p<0.05)。与非纹状体棒状杆菌组患者相比,纹状体棒状杆菌患者的总体生存率较低(28.6对31.6个月,分别为;p=0.0285)。多因素分析显示纹状体棒状杆菌感染是预后不良的独立因素(p<0.0001)。
    鉴于我们的研究结果,纹状体棒状杆菌似乎是感染外周组织并使伤口愈合复杂化的重要机会病原体。鉴于其众多且令人担忧的毒力因素(如多药耐药性和生物膜产生),在医院和门诊环境中,专业伤口护理提供者应特别注意这种病原体。
    UNASSIGNED: To investigate Corynebacterium striatum as a nosocomial pathogen infecting hard-to-heal peripheral wounds, such as skin wounds, soft tissue abscesses and osteomyelitis. As of 2023, the medical community were alerted against the risk of emerging systemic and central infections; on the other hand literature on peripheral cutaneous regions is still scarce.
    UNASSIGNED: In this study, two groups of patients with similar lesions which were infected were compared: one group with the presence of the coryneform rod, the other without.
    UNASSIGNED: In total, Corynebacterium striatum was cultured from 62 patients and 131 samples. Corynebacterium striatum infection correlated well with the presence of: foot ulcer; venous leg ulcer; altered ambulation and/or altered foot loading; peripheral vascular and arterial disease; hospitalisation; malignancy; spinal cord injury; and recent administration of antibiotics (p<0.05 for all associations). Patients with Corynebacterium striatum had a lower overall survival rate compared to patients in the non-Corynebacterium striatum group (28.6 versus 31.6 months, respectively; p=0.0285). Multivariate analysis revealed that Corynebacterium striatum infection was an independent factor for poor prognosis (p<0.0001).
    UNASSIGNED: In view of the findings of our study, Corynebacterium striatum appears to be an important opportunistic pathogen infecting peripheral tissues and complicating wound healing. Given its numerous and worrying virulence factors (such as multidrug resistance and biofilm production), particular attention should be given to this pathogen by professional wound care providers in nosocomial and outpatient environments.
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  • 文章类型: Journal Article
    背景:与单抗微生物感染相比,多微生物感染是与更差的结果相关的复杂感染。我们需要简单的,快,和具有成本效益的动物模型,以评估其仍然鲜为人知的发病机制。
    方法:我们开发了一种针对机会性病原体的果蝇多微生物感染模型,并评估了其区分来自气单胞菌菌株的人类多微生物感染病例的细菌混合物的作用的能力。通过针刺苍蝇的背胸获得全身性感染,随着时间的推移,对苍蝇的存活进行了监测。单个菌株或配对菌株(菌株比1:1)感染了果蝇的不同谱系。
    结果:单个菌株在20小时内杀死了80%以上的苍蝇。感染过程可以通过微生物混合物改变。该模型可以区分不同的影响(协同,拮抗,并且没有区别),这导致了更温和的,更严重,或者类似的感染,取决于所考虑的配对菌株。然后,我们研究了影响的决定因素。在主要信号通路(Toll缺乏和IMD缺乏)的缺乏果蝇谱系中,这表明活跃的微生物/微生物/宿主相互作用。
    结论:这些结果表明黑腹D.melanogaster全身性感染模型与多微生物感染的研究一致。
    BACKGROUND: Polymicrobial infections are complex infections associated with worse outcomes compared to monomicrobial infections. We need simple, fast, and cost-effective animal models to assess their still poorly known pathogenesis.
    METHODS: We developed a Drosophila melanogaster polymicrobial infection model for opportunistic pathogens and assessed its capacity to discriminate the effects of bacterial mixtures taken from cases of human polymicrobial infections by Aeromonas strains. A systemic infection was obtained by needle pricking the dorsal thorax of the flies, and the fly survival was monitored over time. Different lineages of the flies were infected by a single strain or paired strains (strain ratio 1:1).
    RESULTS: Individual strains killed more than 80% of the flies in 20 h. The course of infection could be altered with a microbial mix. The model could distinguish between the diverse effects (synergistic, antagonistic, and no difference) that resulted in a milder, more severe, or similar infection, depending on the paired strain considered. We then investigated the determinants of the effects. The effects were maintained in deficient fly lineages for the main signaling pathways (Toll deficient and IMD deficient), which suggests an active microbe/microbe/host interaction.
    CONCLUSIONS: These results indicate that the D. melanogaster systemic infection model is consistent with the study of polymicrobial infection.
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  • 文章类型: Journal Article
    妊娠结局和妇女的健康直接受到阴道微生物群的影响。这种微生物群由不同比例的各种微生物组成的动态生态系统组成,在健康条件下保护阴道上皮免受感染。然而,阴道感染病例经常在育龄妇女中诊断,导致更严重的结果。因此,我们的主要目标是确定细菌性阴道病(BV)的患病率,需氧性阴道炎(AV),厄瓜多尔孕妇和非孕妇的外阴阴道念珠菌病(VVC)。在卡洛斯·安德拉德·马林医院(HCAM)寻求初级保健的217名13至40岁的女性中进行了一项横断面研究,2018年10月至2019年2月期间,妇科产科医院IsidroAyora(HGOIA)和CiprianaDueñas健康教学中心。阴道微生物群的经典表征是通过Nugent标准显微镜进行的,以评估BV的存在。健康和中间微生物群,通过Donders的标准来确定AV的存在,并通过Marot-Leblond标准来诊断VVC。从阴道样品中提取DNA并进行聚合酶链反应(PCR)分析,以表征加德纳菌的存在。,Mobiluncusmulieris,大肠杆菌,肠球菌属。,和乳杆菌属。最后,通过定量实时PCR(qPCR)对阴道微生物群正常的女性和AV女性的样本进行乳杆菌定量.我们的结果显示52%的女性拥有健康的微生物群,7%与中间微生物群,41%的人患有阴道菌群失调,包括27%的AV,8%的BV和4%的VVC和2%的共同感染或共同生态失调。此外,与非孕妇相比,孕妇中的乳酸杆菌含量更高,而AV病例的特征是乳酸杆菌明显下降。,更确切地说,在1E3和1E5菌落形成单位(CFU)/ml之间。最后,阴道微生物群正常的女性显示乳杆菌的平均负荷在1E6和1E7CFU/ml之间.这项初步研究表明,孕妇和非孕妇之间没有统计学上的显着差异。指出使用乳酸杆菌定量预防未来阴道感染的可能性。
    Pregnancy outcomes and women\'s health are directly affected by vaginal microbiota. This microbiota consists of a dynamic ecosystem of various microbes in different ratios, which in healthy conditions protect the vaginal epithelium from infections. However, cases of vaginal infection are regularly diagnosed in women of reproductive age, contributing to more severe outcomes. Therefore, our main goal was to determine the prevalence of bacterial vaginosis (BV), aerobic vaginitis (AV), and vulvovaginal candidiasis (VVC) among Ecuadorian pregnant and non-pregnant women. A cross-sectional study was conducted among 217 women between 13 and 40 years old seeking primary healthcare in Carlos Andrade Marin Hospital (HCAM), Gynecological-Obstetric Hospital Isidro Ayora (HGOIA) and Center for Teaching Health Cipriana Dueñas during October 2018 to February 2019. The classical characterization of the vaginal microbiota was performed through microscopy by the Nugent criteria to evaluate the presence of BV, healthy and intermediate microbiota, by the criteria of Donders to determine the presence of AV and by the Marot-Leblond criteria to diagnose VVC. DNA extraction from vaginal samples and Polymerase Chain Reaction (PCR) analysis was performed to characterize the presence of Gardnerella spp., Mobiluncus mulieris, Escherichia coli, Enterococcus spp., and Lactobacillus spp. Finally, quantification of the lactobacilli was performed by quantitative real-time PCR (qPCR) for samples from women with normal vaginal microbiota and women with AV. Our results showed 52% of women with healthy microbiota, 7% with intermediate microbiota, and 41% with vaginal dysbiosis, comprising 27% with AV, 8% with BV and 4% with VVC and 2% with co-infections or co-dysbiosis. Additionally, a higher amount of lactobacilli were found in pregnant women when compared to non-pregnant women, while AV cases were characterized by a significant drop of Lactobacillus spp., more precisely, between 1E3 and 1E5 colony forming units (CFU)/ml. Finally, women with normal vaginal microbiota showed an average load of lactobacilli between 1E6 and 1E7 CFU/ml. This pilot study showed no statistically significant differences between pregnant and non-pregnant women, pointing to the possibility to use lactobacilli quantification for the prevention of future vaginal infections.
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  • 文章类型: Journal Article
    The present study explored the association between multiple antibiotic resistance (MAR) index and virulence index to determine what percent of environmental antibiotic-resistant (eARB) bacteria could pose threat as potential pathogen. 16srRNA-based sequencing of 113 non-duplicate isolates identified majority of them to be gram negative belonging to Enterobacter, Pseudomonas, Aeromonas, Proteus, Acinetobacter, and Klebsiella. Statistical comparison of MAR indices of the abovementioned genera indicated differences in the median values among the groups (p < 0.001). Pair-wise multiple comparison by Dunn\'s method indicated significant difference in MAR indices (p < 0.05), based on which multiple antibiotic resistance phenotype could be ranked in the order Pseudomonas > Klebsiella = Acinetobacter > Proteus > Aeromonas > Enterobacter. Association between MAR index and virulence index revealed that 25% of isolates in the population under study posed high threat to human/animal or both; out of which 75% isolates belonged to genus Pseudomonas. Based on observations of comparative analysis of the six gram-negative genera, it could be concluded that Pseudomonas isolates from environment pose significantly high threat as potential pathogens while Enterobacter isolates posed no threat.
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