Microsatellites

微卫星
  • 文章类型: Journal Article
    Rhipicephalusmicroplus对全球的牲畜健康和农业经济构成了重大威胁。它对不同环境和宿主的显着适应性证明了其广泛的遗传多样性。这篇综述深入研究了R.microplus的遗传多样性,采用三个关键的遗传标记:细胞色素c氧化酶I(COX1)基因,核糖体基因,和微型卫星。COX1基因,遗传表征和系统发育聚类的重要工具,提供了对蜱的适应性的见解。核糖体基因,例如内部转录间隔区(ITS-1和2)以及18S和28S,通常用于物种分化。然而,由于indel(插入和删除),它们的使用受到限制。微型卫星和微型卫星,以其高度多态性而闻名,已成功用于研究各种蜱物种的种群和遗传多样性。尽管他们的有效性,无效等位基因和标记变异等挑战值得仔细考虑。Bm86,经过充分研究的候选疫苗,表现出巨大的遗传多样性。这种多样性直接影响疫苗的效力,对开发普遍有效的基于Bm86的疫苗构成挑战。此外,该综述强调了与合成拟除虫菊酯抗性相关的基因的普遍性。鉴定R.microplus的杀螨剂抗性基因中的单核苷酸多态性促进了用于检测和监测对合成拟除虫菊酯抗性的分子标记的开发。然而,钠通道中的突变,合成拟除虫菊酯的靶位点,与R.microplus的耐药状态有很好的相关性,其他杀螨剂靶基因的情况并非如此。这项研究强调了理解遗传多样性在制定有效的蜱管理策略中的重要性。遗传标记的选择应根据分类分辨率的水平和正在研究的蜱群进行调整。结合多个标记并整合其他分子和形态数据的整体方法可能会提供对蜱多样性和关系的更全面的了解。这项研究对制定育种计划,开发针对蜱和蜱传播疾病(TTBD)的疫苗以及抗性蜱的管理策略具有深远的意义。
    Rhipicephalus microplus poses a substantial threat to livestock health and agricultural economies worldwide. Its remarkable adaptability to diverse environments and hosts is a testament to its extensive genetic diversity. This review delves into the genetic diversity of R. microplus, employing three pivotal genetic markers: the cytochrome c oxidase I (COX1) gene, ribosomal genes, and microsatellites. The COX1 gene, a crucial tool for genetic characterization and phylogenetic clustering, provides insights into the adaptability of ticks. Ribosomal genes, such as internal transcribed spacer regions (ITS-1 and2) as well as 18S and 28S, are routinely utilized for species differentiation. However, their use is limited due to indels (insertions and deletions). Microsatellites and minisatellites, known for their high polymorphism, have been successfully employed to study populations and genetic diversity across various tick species. Despite their effectiveness, challenges such as null alleles and marker variations warrant careful consideration. Bm86, a well-studied vaccine candidate, exhibits substantial genetic diversity. This diversity directly influences vaccine efficacy, posing challenges for developing a universally effective Bm86-based vaccine. Moreover, the review emphasizes the prevalence of genes associated with synthetic pyrethroid resistance. Identifying single nucleotide polymorphisms in the acaricide-resistant genes of R. microplus has facilitated the development of molecular markers for detecting and monitoring resistance against synthetic pyrethroids. However, mutations in sodium channels, the target site for synthetic pyrethroid, correlate well with the resistance status of R. microplus, which is not the case with other acaricide target genes. This study underscores the importance of understanding genetic diversity in developing effective tick management strategies. The choice of genetic marker should be tailored based on the level of taxonomic resolution and the group of ticks under investigation. A holistic approach combining multiple markers and integrating additional molecular and morphological data may offer a more comprehensive understanding of tick diversity and relationships. This research has far-reaching implications in formulating breeding programs and the development of vaccine against ticks and tick-borne diseases (TTBDs) as well as strategies for the management of resistant ticks.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Systematic Review
    背景:薄黑色素瘤前哨淋巴结活检(SLNB)的适应症尚不清楚。这项荟萃分析旨在确定SLNB在薄型黑色素瘤中的阳性率,并总结不同高危特征对SLNB阳性结果的预测价值。
    方法:在四个数据库中检索了2000年1月至2020年12月发表的关于SLNB在薄型黑色素瘤患者中进行的文献。计算每个高危特征的总体阳性率和阳性率,并以95%置信区间(CI)获得。分析高风险特征的未调整比值比(ORs)和调整后ORs(AORs)。使用随机效应模型荟萃分析估计集合效应。
    结果:66项研究报告38,844例接受SLNB的薄型黑色素瘤患者符合纳入标准。SLNB的合并阳性率为5.1%[95%置信区间(CI)4.9%-5.3%]。显著预测SLNB阳性结果的特征是厚度≥0.8mm[AOR1.94(95CI1.28-2.95);阳性率7.0%(95CI6.0-8.0%)];溃疡[AOR3.09(95CI1.75-5.44);阳性率4.2%(95CI1.8-7.2%)];有丝分裂率>0/mm2[AOR1.63(95CI1.13-2.36%CI]1.9572%-2.4
    结论:SLNB在薄型黑色素瘤中的总阳性率为5.1%。确定的SLN阳性最强预测指标是未调整分析的微卫星和调整分析的溃疡。Breslow厚度≥0.8mm和有丝分裂率>0/mm2均可预测调整分析中的SLN阳性,并将阳性率提高至7.0%和7.7%。我们建议具有上述高风险特征的薄型黑色素瘤患者应考虑给予SLNB。
    BACKGROUND: The indications for sentinel lymph node biopsy (SLNB) for thin melanoma are still unclear. This meta-analysis aims to determine the positive rate of SLNB in thin melanoma and to summarize the predictive value of different high-risk features for positive results of SLNB.
    METHODS: Four databases were searched for literature on SLNB performed in patients with thin melanoma published between January 2000 and December 2020. The overall positive rate and positive rate of each high-risk feature were calculated and obtained with 95% confidence intervals (CIs). Both unadjusted odds ratios (ORs) and adjusted ORs (AORs) of high-risk features were analyzed. Pooled effects were estimated using random-effects model meta-analyses.
    RESULTS: Sixty-six studies reporting 38,844 patients with thin melanoma who underwent SLNB met the inclusion criteria. The pooled positive rate of SLNB was 5.1% [95% confidence interval (CI) 4.9%-5.3%]. Features significantly predicted a positive result of SLNB were thickness≥0.8 mm [AOR 1.94 (95%CI 1.28-2.95); positive rate 7.0% (95%CI 6.0-8.0%)]; ulceration [AOR 3.09 (95%CI 1.75-5.44); positive rate 4.2% (95%CI 1.8-7.2%)]; mitosis rate >0/mm2 [AOR 1.63 (95%CI 1.13-2.36); positive rate 7.7% (95%CI 6.3-9.1%)]; microsatellites [OR 3.8 (95%CI 1.38-10.47); positive rate 16.6% (95%CI 2.4-36.6%)]; and vertical growth phase [OR 2.76 (95%CI 1.72-4.43); positive rate 8.1% (95%CI 6.3-10.1%)].
    CONCLUSIONS: The overall positive rate of SLNB in thin melanoma was 5.1%. The strongest predictor for SLN positivity identified was microsatellites on unadjusted analysis and ulceration on adjusted analysis. Breslow thickness ≥0.8 mm and mitosis rate >0/mm2 both predict SLN positivity in adjusted analysis and increase the positive rate to 7.0% and 7.7%. We suggest patients with thin melanoma with the above high-risk features should be considered for giving an SLNB.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    The grey wolf (Canis lupus) is an iconic large carnivore that has increasingly been recognized as an apex predator with intrinsic value and a keystone species. However, wolves have also long represented a primary source of human-carnivore conflict, which has led to long-term persecution of wolves, resulting in a significant decrease in their numbers, genetic diversity and gene flow between populations. For more effective protection and management of wolf populations in Europe, robust scientific evidence is crucial. This review serves as an analytical summary of the main findings from wolf population genetic studies in Europe, covering major studies from the \'pre-genomic era\' and the first insights of the \'genomics era\'. We analyse, summarize and discuss findings derived from analyses of three compartments of the mammalian genome with different inheritance modes: maternal (mitochondrial DNA), paternal (Y chromosome) and biparental [autosomal microsatellites and single nucleotide polymorphisms (SNPs)]. To describe large-scale trends and patterns of genetic variation in European wolf populations, we conducted a meta-analysis based on the results of previous microsatellite studies and also included new data, covering all 19 European countries for which wolf genetic information is available: Norway, Sweden, Finland, Estonia, Latvia, Lithuania, Poland, Czech Republic, Slovakia, Germany, Belarus, Russia, Italy, Croatia, Bulgaria, Bosnia and Herzegovina, Greece, Spain and Portugal. We compared different indices of genetic diversity in wolf populations and found a significant spatial trend in heterozygosity across Europe from south-west (lowest genetic diversity) to north-east (highest). The range of spatial autocorrelation calculated on the basis of three characteristics of genetic diversity was 650-850 km, suggesting that the genetic diversity of a given wolf population can be influenced by populations up to 850 km away. As an important outcome of this synthesis, we discuss the most pressing issues threatening wolf populations in Europe, highlight important gaps in current knowledge, suggest solutions to overcome these limitations, and provide recommendations for science-based wolf conservation and management at regional and Europe-wide scales.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

公众号