Manihot

Manihot
  • 文章类型: Journal Article
    使用绿色技术将天然淀粉转化为纳米颗粒是生产Pickering乳液稳定剂的一种有趣方法,针对清洁标签产品中高度稳定的乳液。采用纳米沉淀法制备Pickering淀粉纳米颗粒,而超声技术已被用来调节这些纳米颗粒的大小,同时开发的乳液。因此,本研究的主要目的是评估木薯淀粉纳米颗粒(SNP)的稳定作用,通过纳米沉淀技术结合超声处理在水和油(更疏水的物理化学环境)的存在下进行,不同于以前的研究,只在水的存在下进行机械处理。结果表明,增加的超声能量输入可以降低水分散体中的粒径(117.58至55.75nm)和多分散性(0.958至0.547)。随后,通过SNP稳定的Pickering乳液显示,增加乳化(超声处理)时间导致更小的液滴尺寸和单峰尺寸分布。尽管絮凝,长期超声处理(6和9分钟)在储存7天后几乎不会引起液滴大小的变化。空化效应有利于油滴之间通过弱吸引力和颗粒共享的相互作用,有利于Pickering稳定,防止液滴聚结。我们的结果表明,仅使用物理修饰来获得可以产生对环境友好的聚结稳定乳液的纳米颗粒的潜力。
    Using green techniques to convert native starches into nanoparticles is an interesting approach to producing stabilizers for Pickering emulsions, aiming at highly stable emulsions in clean label products. Nanoprecipitation was used to prepare the Pickering starch nanoparticles, while ultrasound technique has been used to modulate the size of these nanoparticles at the same time as the emulsion was developed. Thus, the main objective of this study was to evaluate the stabilizing effect of cassava starch nanoparticles (SNP) produced by the nanoprecipitation technique combined with ultrasound treatment carried out in the presence of water and oil (more hydrophobic physicochemical environment), different from previous studies that carry out the mechanical treatment only in the presence of water. The results showed that the increased ultrasound energy input could reduce particle size (117.58 to 55.75 nm) and polydispersity (0.958 to 0.547) in aqueous dispersions. Subsequently, Pickering emulsions stabilized by SNPs showed that increasing emulsification (ultrasonication) time led to smaller droplet sizes and monomodal size distribution. Despite flocculation, long-term ultrasonication (6 and 9 min) caused little variation in the droplet size after 7 days of storage. The cavitation effects favored the interaction between oil droplets through weak attraction forces and particle sharing, favoring the Pickering stabilization against droplet coalescence. Our results show the potential to use only physical modifications to obtain nanoparticles that can produce coalescence-stable emulsions that are environmentally friendly.
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  • 文章类型: Journal Article
    需要替代的蛋白质来源来满足大量的植物蛋白需求。农业工业副产品如叶具有相当大的潜力作为大分子的来源,一旦它们大部分作为废物被丢弃。当前的研究评估了干木薯叶作为蛋白质来源。首先,碱性提取参数(固液比,pH值,和温度)进行优化,并在pH2.5或4下酸化导致最高蛋白质产量的运行。溶解的碳水化合物对蛋白质沉淀的影响也通过在沉淀之前经由醇提取将其除去来评估。实验设计表明,与低固液比相关的高pH和温度条件导致蛋白质产量增加。上清液中碳水化合物的存在显著影响蛋白质沉淀。当从含有碳水化合物的上清液中获得蛋白质浓缩物时,其蛋白质含量约为17.51%,而从不含碳水化合物的上清液中获得的蛋白质含量增加到26.88%。沉淀pH也影响蛋白质含量,而当pH从2.5增加到4时,蛋白质含量显着降低。木薯叶中碳水化合物与蛋白质之间的天然相互作用对乳液稳定性指数以及起泡能力和稳定性有积极影响。因此,所提出的结果为从农业工业副产品中提取和沉淀蛋白质带来了挑战。
    Alternative protein sources have been required to meet the significant plant protein demand. Agro-industrial by-products such as leaves have considerable potential as a source of macromolecules once they are mostly discarded as waste. The current study evaluated dried cassava leaves as a protein source. First, alkaline extraction parameters (solid-liquid ratio, pH, and temperature) were optimized and the run that result in the highest protein yield were acidified at pH 2.5 or 4. The influence of carbohydrate solubilized on protein precipitation was also evaluated by removing it via alcoholic extraction prior to precipitation. The experimental design showed that high pH and temperature conditions associated with a low solid-liquid ratio led to increased protein yields. The presence of carbohydrates in the supernatant significantly influenced protein precipitation. The protein concentrate had around 17.51% protein when it was obtained from a supernatant with carbohydrates, while protein content increased to 26.88% when it was obtained from carbohydrate-free supernatant. The precipitation pH also influenced protein content, whereas protein content significantly decreased when pH increased from 2.5 to 4. The natural interaction between carbohydrates and proteins from cassava leaves positively influenced the emulsion stability index and the foaming capacity and stability. Thus, the presented results bring insights into challenges in extracting and precipitation proteins from agro-industrial by-products.
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  • 文章类型: Journal Article
    污水污泥作为肥料的应用可以有利于可持续农业,因为它可以在很大程度上解决作物对氮和磷的需求,并且与其他处置途径相比成本更低。例如,焚化,和卫生垃圾填埋场。本研究评估了非粮食作物污水污泥中试造粒的可行性(例如,观赏植物)。通过以9:1的污泥与淀粉的重量比混合污水污泥和粘合剂(木薯淀粉)来设计共造粒方法。氮(N)的量,磷(P),所得颗粒的钾(K)测定为5.7%,4.9%,和0.2%,分别。遵循马来西亚和美国的标准,颗粒污泥的非必要元素和致病性被测量到低于预定限值,因此对于农业应用是安全的。使用50%无机肥料50%污水污泥颗粒的种植试验对开花植物Celosiaplumosa的生长表现出了有希望的结果,具有更好的尺寸和颜色,身高高20%,4%以上的叶绿素含量,更多54%的叶子,茎生长增加43%,与对照相比,花增加了27%。同样,万寿菊的种植试验导致10.5%的叶片变宽,10.6%更重的叶片干重,与充分利用无机肥料的对照相比,叶绿素含量增加了12.5%。通过考虑流动性来运营生产设施,经济分析估计,每吨颗粒状污水污泥的生产成本为0.98美元。
    Application of sewage sludge as fertilizer can be beneficial for sustainable agriculture as it could largely account for nitrogen and phosphorus demand for crops and has lower costs compared to other disposal routes, e.g., incineration, and sanitary landfills. This study evaluates the feasibility of pilot-scale pelletization of sewage sludge for non-food crops (e.g., ornamental plants). The co-pelletization method was designed by mixing sewage sludge and binder (tapioca starch) at a 9:1 sludge-to-starch weight ratio. The amount of nitrogen (N), phosphorus (P), and potassium (K) of the resultant pellets were determined at 5.7%, 4.9%, and 0.2%, respectively. Following Malaysian and US Standards, non-essential elements and pathogenicity of the pelletized sewage sludge were measured below the predetermined limits and hence safe for agricultural application. The planting trial using 50% inorganic fertilizer + 50% sewage sludge pellets exhibited a promising result on the growth of the flowering plant Celosia plumosa, with having better dimension and color, 20% higher in height, 4% more chlorophyll content, 54% more leaf, 43% greater stem growth, and 27% more flowers compared to control. Likewise, the planting trial on Tagetes erecta resulted in 10.5% wider leaf, 10.6% heavier leaf dry weight, and 12.5% more chlorophyll content compared to control with full usage of inorganic fertilizer. By considering liquidities to operate the production facility, the economic analysis estimated that the production cost per ton of pelletized sewage sludge produced was USD 0.98.
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  • 文章类型: Journal Article
    以不同浓度的三氟甲磺酸锂(LiTFT)为掺杂剂盐,通过热化学方法制备了木薯淀粉固体生物聚合物电解质(SBPE)薄膜。该过程始于将木薯淀粉分散在水中,然后加热以促进糊化;随后,添加不同浓度的增塑剂和LiTFT。红外光谱分析(FTIR-ATR)显示了淀粉某些特征带波数的变化,从而证明LiTFT盐和生物聚合物基质之间的相互作用。短程结晶度指数,由COH与COC波段的比值决定,在无盐SBPE中表现出最高的结晶度,在浓度比(Xm)为0.17的SBPE中表现出最低的结晶度。热重分析表明,盐的添加使脱水过程温度提高了5°C。此外,在将LiTFT盐添加到SBPE中之后,在较低温度下显示热分解过程。差示扫描量热法表明,盐的添加影响了与淀粉分子堆积降解有关的吸热过程,这在无盐SBPE中在70°C下发生,并且在含有不同浓度的LiTFT盐的膜中在较低温度(低2或3°C)下发生。SBPE薄膜的循环伏安分析确定了所有样品中葡萄糖单元的氧化还原过程,观察到各种盐浓度之间的峰值电势(Ep)和峰值电流(Ip)的差异。电化学阻抗谱用于建立等效电路模型Rf-(Cdl/(Rct-(CPE/Rre)))并确定电化学参数,Xm=17的SBPE的导电值较高,为2.72×10-3Scm-1,而无盐SBPE的导电值较低,为5.80×10-4Scm-1。结论是木薯淀粉SBPE膜中LiTFT盐的浓度影响其形态并略微降低其热稳定性。此外,电化学行为受生物聚合物的葡萄糖单元的氧化还原电位及其离子电导率的变化的影响。
    Cassava starch solid biopolymer electrolyte (SBPE) films were prepared by a thermochemical method with different concentrations of lithium triflate (LiTFT) as a dopant salt. The process began with dispersing cassava starch in water, followed by heating to facilitate gelatinization; subsequently, plasticizers and LiTFT were added at differing concentrations. The infrared spectroscopy analysis (FTIR-ATR) showed variations in the wavenumber of some characteristic bands of starch, thus evidencing the interaction between the LiTFT salt and biopolymeric matrix. The short-range crystallinity index, determined by the ratio of COH to COC bands, exhibited the highest crystallinity in the salt-free SBPEs and the lowest in the SBPEs with a concentration ratio (Xm) of 0.17. The thermogravimetric analysis demonstrated that the salt addition increased the dehydration process temperature by 5 °C. Additionally, the thermal decomposition processes were shown at lower temperatures after the addition of the LiTFT salt into the SBPEs. The differential scanning calorimetry showed that the addition of the salt affected the endothermic process related to the degradation of the packing of the starch molecules, which occurred at 70 °C in the salt-free SBPEs and at lower temperatures (2 or 3 °C less) in the films that contained the LiTFT salt at different concentrations. The cyclic voltammetry analysis of the SBPE films identified the redox processes of the glucose units in all the samples, with observed differences in peak potentials (Ep) and peak currents (Ip) across various salt concentrations. Electrochemical impedance spectroscopy was used to establish the equivalent circuit model Rf-(Cdl/(Rct-(CPE/Rre))) and determine the electrochemical parameters, revealing a higher conduction value of 2.72 × 10-3 S cm-1 for the SBPEs with Xm = 17 and a lower conduction of 5.80 × 10-4 S cm-1 in the salt-free SBPEs. It was concluded that the concentration of LiTFT salt in the cassava starch SBPE films influences their morphology and slightly reduces their thermal stability. Furthermore, the electrochemical behavior is affected in terms of variations in the redox potentials of the glucose units of the biopolymer and in their ionic conductivity.
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  • 文章类型: Journal Article
    在泰国东北部的一个国家公园,农业土地已由小规模农民从天然林转变为木薯农业。我们假设长期的木薯单一栽培会导致土壤特性的退化。为了检验假设,我们进行了为期五年(2016-2020年)的木薯农田土壤理化性质研究,并检查了其邻近天然林的土壤特性,作为一个控制。在2011年至2015年的五年中,被检查的木薯农田由天然林转化。2016年发现有机碳的显着减少以及可交换钾和堆积密度的增加,这表明这些土壤特性在农田转换后迅速变化。另一方面,在2020年晚些时候发现了土壤氮素的显着增加和pH值的降低,这表明这些土壤特性因反复的农业活动而逐渐改变,如施肥和践踏。相比之下,有效磷酸盐没有显著差异,电导率,阳离子交换能力,和土壤质地(沙子的分数,淤泥,和粘土)在森林和农田土壤中。阳离子交换容量与粘土的分数呈正相关,有机碳,和pH。泰国国家公园内禁止使用草甘膦和百草枯除草剂。然而,2020年,在雨季和旱季,农田土壤中检测到草甘膦(高达5.0mgkg-1),至少在2020年的旱季,在农田的流水中检测到草甘膦(高达2.5mgl-1)。土壤退化和除草剂污染可能带来导致陆地生态系统不可逆转变化的高风险。我们从农业生产的角度讨论了这个问题的根源,经济,以及对环境的影响,并提出有效的政策措施。
    In a national park in Northeast Thailand, agricultural land has been converted from natural forest by small-scale farmers for cassava agriculture. We hypothesise that long-termed cassava monoculture leads to the degradation of soil properties. To test the hypothesis, we conducted a five-year (2016-2020) study on the physical and chemical properties of soil in cassava farmland, and also examined the soil properties of its adjacent natural forests, as a control. The examined cassava farmland was converted from the natural forest during the five years from 2011 to 2015. The significant decrease in organic carbon and the increases in exchangeable potassium and bulk density were found in 2016, indicating that these soil properties varied quickly following the farmland conversion. On the other hand, the significant increase in soil nitrogen and the decrease in pH were found later in 2020, indicating that these soil properties were gradually altered by repeated agricultural activities, such as fertilizer application and trampling. In contrast, there were no significant differences in available phosphate, electrical conductivity, cation exchange capacity, and the soil texture (the fractions of sand, silt, and clay) among the forest and farmland soils. The cation exchange capacity was positively correlated to the fraction of clay, the organic carbon, and pH. The use of glyphosate and paraquat herbicides is prohibited within national parks in Thailand. However, in 2020, glyphosate was detected in farmland soil (up to 5.0 mg kg-1) during both the rainy and dry seasons, and glyphosate (up to 2.5 mg l-1) was detected in stream water from the farmland during the dry season at least in 2020. Soil degradation and herbicide pollution may carry a high risk of causing irreversible changes in terrestrial ecosystems. We discuss the root causes of this issue from perspectives of agricultural production, economy, and the environmental impact, and propose effective policy measures.
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  • 文章类型: Journal Article
    在东南亚(SEA),Ceratobasidium属的挑剔真菌与可可和木薯中的芽芽增殖和血管坏死有关,从热带美洲引进该地区的作物。这里,我们报告了Ceratobasidiumsp。的分离和体外培养。从具有女巫扫帚病(CWBD)症状的木薯中分离出来,这种作物在SEA中的毁灭性疾病。使用混合组装策略进行的基因组表征将真菌鉴定为C.theobromae物种的分离物,可可在SEA中血管条纹枯萎的原因。两种真菌的基因组大小均>31Mb(GC含量49%),内部转录间隔区(ITS)的核苷酸同一性>98%,用于物种水平鉴定的基因中的核苷酸同一性>94%。使用RNAscope®,我们追踪了病原体,并证实了其沿着木薯茎在木质部和表皮中的不规则分布。这解释了从患病植物的无症状部分获得健康种植材料。这些结果对于了解CWBD的流行病学至关重要,作为疾病管理的基础,包括防止进一步传播的措施,并最大程度地减少通过将木薯材料长距离运送到非洲和美洲而引入可氏梭菌的风险。
    In Southeast Asia (SEA) fastidious fungi of the Ceratobasidium genus are associated with proliferation of sprouts and vascular necrosis in cacao and cassava, crops that were introduced from the tropical Americas to this region. Here, we report the isolation and in vitro culture of a Ceratobasidium sp. isolated from cassava with symptoms of witches\' broom disease (CWBD), a devastating disease of this crop in SEA. The genome characterization using a hybrid assembly strategy identifies the fungus as an isolate of the species C. theobromae, the causal agent of vascular streak dieback of cacao in SEA. Both fungi have a genome size > 31 Mb (G+C content 49%), share > 98% nucleotide identity of the Internal Transcribed Spacer (ITS) and > 94% in genes used for species-level identification. Using RNAscope® we traced the pathogen and confirmed its irregular distribution in the xylem and epidermis along the cassava stem, which explains the obtention of healthy planting material from symptom-free parts of a diseased plant. These results are essential for understanding the epidemiology of CWBD, as a basis for disease management including measures to prevent further spread and minimize the risk of introducing C. theobromae via long-distance movement of cassava materials to Africa and the Americas.
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  • 文章类型: Journal Article
    背景:Macrophominaphaseolina是一种病原体,可引起机会性疾病,该疾病通过土壤和种子传播,并影响500多种不同的植物物种,像水果,树木,行作物。霉菌毒素,例如phaseolinicacid,和phaseolinone,在以前的研究中,由M.phaseolina分离株产生;然而,这些霉菌毒素的产生似乎因宿主和地区而异。
    结果:在这项研究中,从腐烂的木薯块茎中分离出菜豆巨噬细胞菌株3A,并使用内部转录间隔区序列的分析进行鉴定。在25°C下将分离物接种在新鲜的健康木薯块茎上,并监测块茎腐烂潜力4周。用设计的引物测定毒力基因MPH_06603、MPH_06955和MPH_01521,和次级代谢产物通过FTIR和GCMS进行表征。从实验的第2周开始观察到腐烂的块茎效应,块茎严重腐烂和体重减轻。PCR显示存在MPH_06603毒力基因。GCMS显示N-甲基新戊酰胺(115.0m/z),丁烷,1,4-二甲氧基-(119.0m/z),5-羟甲基糠醛(126.0m/z)是病原体产生的主要代谢产物。代谢物中的化合物抑制CYP3A4酶,引起眼睛刺激,和人类以太相关基因抑制。
    结论:这项研究表明,菜籽是木薯块茎腐烂的原因,导致农产品产量降低。产生的代谢物是有毒的,对人类食用不安全。建议农民销毁受这种病原体影响的木薯,以防止其对人类和动物的毒性作用。
    BACKGROUND: Macrophomina phaseolina is a pathogen that causes an opportunistic disease that spreads by soil and seeds and affects more than 500 different plant species, like fruits, trees, and row crops. Mycotoxins, such as phaseolinic acid, and phaseolinone, are produced by M. phaseolina isolates in previous investigations; however, the production of these mycotoxins seems to vary depending on the host and the region.
    RESULTS: In this study, Macrophomina phaseolina strain 3 A was isolated from rotten cassava tuber and identified using the analysis of the sequences of the internal transcribed spacer region. The isolate was inoculated on a fresh healthy cassava tuber at 25 °C and tuber-rotting potential was monitored for 4 weeks. Virulence genes MPH_06603, MPH_06955, and MPH_01521 were determined with designed primers, and secondary metabolites were characterized by FTIR and GCMS. The rotten tuber effect was observed from the 2nd week of the experiment with severe tuber rot and weight reduction. The PCR showed the presence of MPH_06603 virulence gene. The GCMS showed N-Methylpivalamide (115.0 m/z), Butane, 1,4-dimethoxy- (119.0 m/z), and 5-Hydroxymethylfurfural (126.0 m/z) were the predominant metabolites produced by the pathogen. The compounds in the metabolites inhibit CYP3A4 enzymes, cause eye irritation, and Human Ether-a-go-go-related gene inhibition.
    CONCLUSIONS: This study revealed that M. phaseolina was responsible for the cassava tuber rot which leads to a lower yield of farm produce. The metabolites produced are toxic and unsafe for human consumption. It is suggested that farmers should destroy any cassava affected by this pathogen to prevent its toxic effects on humans and animals.
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  • 文章类型: Journal Article
    煮木薯根的主要属性之一是它在短时间内软化的能力,也就是所谓的饱餐。本研究旨在建立和验证标准操作程序,以评估煮熟的木薯根的可食性。二十种木薯基因型,包括地方品种和改良品种,被选中用于协议开发,另外还有10种基因型用于验证。烹饪之后,使用配备有五叶片渥太华细胞探针的纹理计评估木薯根的硬度和挤压完成的工作。使用经过训练的小组成员评估相同样品的感官质地分析参数,例如柔软度和咀嚼性。皮尔逊相关分析显示,感官柔软度和仪器质地测量值之间存在显著正相关(p<0.01)。以及柔软度和烹饪时间之间(p<0.01,r=0.94),咀嚼性和烹饪时间之间(p<0.05,r=0.81)。验证结果证实了烹饪时间之间的显著相关性(p<0.01),感官柔软度,和嚼劲。这些发现表明,烹饪时间可以作为一个可靠的指标,与感官属性密切相关,在确定煮木薯根的粘性。这种方法提供了一种实用的,用于评估木薯根粉质的中通量方法,对育种改良品种有影响,农民收养,和消费者的接受度。
    One of the major attributes of boiled cassava roots is its ability to soften within a short period, otherwise known as mealiness. This study aimed to establish and validate standard operating procedures for assessing the mealiness of boiled cassava roots. Twenty cassava genotypes, including landrace and improved varieties, were selected for the protocol development, with an additional ten genotypes used for validation. Following cooking, the cassava roots were evaluated for hardness and work done in extrusion using a texturometer equipped with a five-blade Ottawa cell probe. The same samples were assessed for sensory texture analysis using trained panelists for parameters such as softness and chewiness. Pearson\'s correlation analysis revealed significant positive correlations (p < 0.01) between sensory softness and instrumental texture measurements, as well as between softness and cooking time (p < 0.01, r = 0.94), and between chewiness and cooking time (p < 0.05, r = 0.81). Validation results confirmed significant correlations (p < 0.01) between cooking time, sensory softness, and chewiness. These findings suggest that cooking time can serve as a reliable indicator, closely associated with sensory attributes, in determining the mealiness of boiled cassava roots. This approach offers a practical, mid-throughput method for assessing cassava root mealiness, with implications for breeding improved varieties, farmers adoption, and consumer acceptance.
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  • 文章类型: Journal Article
    AT-hook基序核定位(AHL)家族对于植物的非生物胁迫反应至关重要。然而,木薯AHL基因的功能尚未阐明。发起人,作为基因表达的重要调控元件,在抵抗压力中起着至关重要的作用。在这项研究中,克隆了木薯MeAHL31基因的启动子。MeAHL31蛋白定位于细胞质和细胞核。qRT-PCR分析显示MeAHL31基因在几乎所有测试的组织中表达,块茎根中的表达是叶柄中的321.3倍。启动子分析表明MeAHL31启动子含有干旱、茉莉酸甲酯(MeJA),脱落酸(ABA),和赤霉素(GA)顺式作用元素。表达分析表明,MeAHL31基因受到盐处理的显着影响,干旱,MeJA,ABA,GA3proMeAHL31-GUS转基因拟南芥的组织化学染色证实,在大多数组织和器官中都发现了GUS染色,不包括种子。β-葡糖醛酸酶(GUS)活性测定表明,不同浓度的NaCl可以增强proMeAHL31-GUS转基因拟南芥的活性,甘露醇(用于模拟干旱),和MeJA治疗。综合发现表明,MeAHL31启动子响应盐和干旱的非生物胁迫,其活性受MeJA激素信号调节。
    The AT-hook motif nuclear-localized (AHL) family is pivotal for the abiotic stress response in plants. However, the function of the cassava AHL genes has not been elucidated. Promoters, as important regulatory elements of gene expression, play a crucial role in stress resistance. In this study, the promoter of the cassava MeAHL31 gene was cloned. The MeAHL31 protein was localized to the cytoplasm and the nucleus. qRT-PCR analysis revealed that the MeAHL31 gene was expressed in almost all tissues tested, and the expression in tuber roots was 321.3 times higher than that in petioles. Promoter analysis showed that the MeAHL31 promoter contains drought, methyl jasmonate (MeJA), abscisic acid (ABA), and gibberellin (GA) cis-acting elements. Expression analysis indicated that the MeAHL31 gene is dramatically affected by treatments with salt, drought, MeJA, ABA, and GA3. Histochemical staining in the proMeAHL31-GUS transgenic Arabidopsis corroborated that the GUS staining was found in most tissues and organs, excluding seeds. Beta-glucuronidase (GUS) activity assays showed that the activities in the proMeAHL31-GUS transgenic Arabidopsis were enhanced by different concentrations of NaCl, mannitol (for simulating drought), and MeJA treatments. The integrated findings suggest that the MeAHL31 promoter responds to the abiotic stresses of salt and drought, and its activity is regulated by the MeJA hormone signal.
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  • 文章类型: Journal Article
    使用快速粘度分析仪测定高质量木薯粉的糊化性质是昂贵且耗时的。使用移动近红外光谱(SCiO™)是一种替代的高通量表型技术,用于预测高质量木薯粉性状的糊化特性。然而,模型的开发和验证是必要的,以验证合理的期望建立了一个预测模型的准确性。在持续繁殖的背景下,我们调查了一种廉价的,便携式光谱仪,只记录整个近红外光谱的一部分(740-1070nm)来预测木薯粘贴特性。三种机器学习模型,即glmnet,lm,和GBM,在R统计程序的Caret包中实现,被单独评估。根据校准统计(R2、RMSE和MAE),我们发现使用glmnet的模型校准提供了分解粘度的最佳模型,峰值粘度和糊化温度。使用一阶导数的glmnet模型,峰值粘度的校准精度和验证精度分别为R2=0.56和R2=0.51,而细分粘度的校准精度和验证精度分别为R2=0.66和R2=0.66.我们还发现,用移动平均线叠加预处理,SavitzkyGolay,一阶导数,使用glmnet模型的二阶导数和标准正态变量导致粘贴温度的校准和验证精度分别为R2=0.65和R2=0.64。开发的校准模型预测HQCF的粘贴特性,具有足够的准确性,可用于筛选目的。因此,SCiO™可以可靠地用于筛选早期育种材料的粘贴特性。
    Determination of pasting properties of high quality cassava flour using rapid visco analyzer is expensive and time consuming. The use of mobile near infrared spectroscopy (SCiO™) is an alternative high throughput phenotyping technology for predicting pasting properties of high quality cassava flour traits. However, model development and validation are necessary to verify that reasonable expectations are established for the accuracy of a prediction model. In the context of an ongoing breeding effort, we investigated the use of an inexpensive, portable spectrometer that only records a portion (740-1070 nm) of the whole NIR spectrum to predict cassava pasting properties. Three machine-learning models, namely glmnet, lm, and gbm, implemented in the Caret package in R statistical program, were solely evaluated. Based on calibration statistics (R2, RMSE and MAE), we found that model calibrations using glmnet provided the best model for breakdown viscosity, peak viscosity and pasting temperature. The glmnet model using the first derivative, peak viscosity had calibration and validation accuracy of R2 = 0.56 and R2 = 0.51 respectively while breakdown had calibration and validation accuracy of R2 = 0.66 and R2 = 0.66 respectively. We also found out that stacking of pre-treatments with Moving Average, Savitzky Golay, First Derivative, Second derivative and Standard Normal variate using glmnet model resulted in calibration and validation accuracy of R2 = 0.65 and R2 = 0.64 respectively for pasting temperature. The developed calibration model predicted the pasting properties of HQCF with sufficient accuracy for screening purposes. Therefore, SCiO™ can be reliably deployed in screening early-generation breeding materials for pasting properties.
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