Magnetic Resonance Spectroscopy

磁共振波谱
  • 文章类型: Journal Article
    蛋白质-配体复合物的结合亲和力测定是药物设计的基石。现有技术受到冗长和昂贵的工艺的限制。基于我们最近推出的利用光化学诱导动态核极化(photo-CIDNP)NMR的新型筛选方法,我们提供了使用0.1mg蛋白质在5-15分钟内确定结合亲和力的方法学框架。对于与PDZ结构域结合的肽和与蛋白质PIN1结合的片段配体的亲和常数,证明了我们方法的准确性。该方法还可以扩展到在竞争结合实验中测量非光CIDNP可极化配体的亲和力。最后,我们证明了基于光CIDNP的NMR片段筛选中的配体还原信号与已建立的饱和转移差异(STD)NMR之间的强相关性。因此,我们的方法测量蛋白质-配体亲和力在微-毫摩尔范围内只有几分钟,并告知在单扫描实验结合表位,为早期药物发现方法开辟了新的途径。
    The binding affinity determination of protein-ligand complexes is a cornerstone of drug design. State-of-the-art techniques are limited by lengthy and expensive processes. Building upon our recently introduced novel screening method utilizing photochemically induced dynamic nuclear polarization (photo-CIDNP) NMR, we provide the methodological framework to determine binding affinities within 5-15 min using 0.1 mg of protein. The accuracy of our method is demonstrated for the affinity constants of peptides binding to a PDZ domain and fragment ligands binding to the protein PIN1. The method can also be extended to measure the affinity of nonphoto-CIDNP-polarizable ligands in competition binding experiments. Finally, we demonstrate a strong correlation between the ligand-reduced signals in photo-CIDNP-based NMR fragment screening and the well-established saturation transfer difference (STD) NMR. Thus, our methodology measures protein-ligand affinities in the micro- to millimolar range in only a few minutes and informs on the binding epitope in a single-scan experiment, opening new avenues for early stage drug discovery approaches.
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  • 文章类型: Journal Article
    背景:急性弛缓性麻痹(AFP)是一种具有多种病因的复杂临床综合征。如果未经治疗,AFP可能由于呼吸肌衰竭而导致死亡。滴答麻痹,这是AFP的一种非感染性神经综合征,发生在勾号附件之后,充血,注射蜱唾液毒素.蜱麻痹没有专门的诊断测试,和死亡率随着明确诊断的延迟而增加。尽管进行了蜱唾液的代谢组学研究,缺乏对受蜱麻痹影响的宿主进行代谢组学评估的研究。
    目标:因此,本研究的目的是使用基于NMR的代谢组学研究血根病导致蜱麻痹的犬血清样本中的代谢组学变化,并鉴定潜在的诊断/预后标志物.
    方法:40只狗感染了血门,临床发现与AFP和确诊的蜱麻痹诊断相符,组成了瘫痪组。十只健康的狗,被接纳用于疫苗接种和/或检查目的,组成了控制组。确认蜱麻痹后,病史,疫苗接种和营养状况,记录了所有狗的体表面积和估计的蜱数。体格检查包括体温,心脏和呼吸频率,毛细血管补充时间评估和改进的格拉斯哥昏迷量表计算。从所有狗的静脉血样本中提取血清样本,并准备用于NMR分析。并进行基于NMR的代谢组学鉴定和定量。
    结果:本研究的基于NMR的血清代谢组学显示出明显的上调/下调表达,提出了一个有希望的途径。此外,据观察,能量代谢,特别是肝功能受损的狗与蜱麻痹,不仅呼吸系统受到影响,肾脏也受到影响。
    结论:结论是,本方法可能有助于更好地理解蜱麻痹导致AFP的病理机制。
    BACKGROUND: Acute flaccid paralysis (AFP) is a complex clinical syndrome with various aetiologies. If untreated, AFP may lead to death due to failure of respiratory muscles. Tick paralysis, which is a noninfectious neurologic syndrome of AFP, occurs following tick attachment, engorgement, and injection of tick saliva toxins. There is no specific diagnostic test for tick paralysis, and mortality increases as definitive diagnosis is delayed. Although metabolomic investigation of tick saliva was conducted, there is a lack of research on metabolomic evaluation of hosts affected by tick paralysis.
    OBJECTIVE: Thus, the aim of this study is to investigate metabolomic changes in serum samples of dogs with tick paralysis due to Rhipicephalus sanguineus using NMR-based metabolomics and to identify potential diagnostic/prognostic markers.
    METHODS: Forty dogs infested with R. sanguineus, with clinical findings compatible with AFP and with a confirmed tick paralysis diagnosis ex juvantibus, constituted the Paralysis Group. Ten healthy dogs, which were admitted either for vaccination and/or check-up purposes, constituted the Control Group. After the confirmation tick paralysis, medical history, vaccination and nutritional status, body surface area and estimated tick numbers of all the dogs were noted. Physical examination included body temperature, heart and respiratory rate, capillary refill time evaluation and Modified Glasgow Coma Scale calculation. Serum samples were extracted from venous blood samples of all the dogs and were prepared for NMR analysis, and NMR-based metabolomics identification and quantification were performed.
    RESULTS: NMR-based serum metabolomics of the present study revealed distinct up/down-regulated expressions, presenting a promising avenue. Moreover, it was observed that energy metabolism and especially liver functions were impaired in dogs with tick paralysis, and not only the respiratory system but also the kidneys were affected.
    CONCLUSIONS: It was concluded that the present approach may help to better understand the pathological mechanisms developing in cases of AFP due to tick paralysis.
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  • 文章类型: English Abstract
    Objective: To summarize the clinical, imaging, and pathological characteristics of mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes syndrome (MELAS) to improve the diagnosis of this rare disease. Methods: A retrospective case series was conducted to collect the clinical data and results of genetic testing, muscle biopsy, and imaging studies including computed tomography (CT), magnetic resonance imaging (MRI), and magnetic resonance spectroscopy (MRS) of 35 patients with MELAS admitted to the Nanjing Drum Tower Hospital from 2012 to 2021. Descriptive statistical analysis including mean, standard deviation, and frequency percentage were carried out. Results: The average age of onset of the patients was 30.2±2.3 years; the prevalence of family history was 20%. The two main initial symptoms were limb weakness and convulsions. The clinical manifestations of the neuromuscular system were proximal muscle weakness and exercise intolerance. The endocrine system is the most affected outside the neuromuscular system, with diabetes being the most common condition. Among the five patients who underwent brain CT, four showed hypodense lesions and two had calcified lesions. Brain MRI in 26 patients showed that the lesions more often affected the parietal lobe, basal ganglia, temporal lobe, occipital lobe, and frontal lobe than the infratentorial areas. Twelve of these individuals exhibited different levels of brain atrophy. Among the 10 patients who underwent 1H-MRS, nine showed a decrease in N-acetylaspartate (NAA) levels, eight exhibited abnormal lactate elevation (Lac peaks), whereas six had both reduced NAA levels and the presence of Lac peaks. Thirty-one patients underwent genetic testing; among them, 25 were found to have the mt.3243A>G mutation, while the remaining six exhibited rare gene alterations. Muscle biopsies were performed in 21 patients, and 15 showed abnormal mitochondrial proliferation manifested by ragged red fibers and defective oxidative phosphorylation manifested by cytochrome C oxidase (COX) enzyme-deficient muscle fibers. Conclusion: The clinical manifestations of MELAS syndrome are variable and complex, and early atypical symptoms could be missed or misdiagnosed. A detailed clinical history, imaging MRS analysis, muscle biopsy, and genetic testing are necessary to confirm the accurate diagnosis of MELAS.
    目的: 总结线粒体脑肌病伴高乳酸血症和卒中样发作(MELAS)患者的临床影像病理特征,旨在提高该罕见病的诊疗水平。 方法: 病例系列研究。收集2012年至2021年在南京大学医学院附属鼓楼医院确诊的35例MELAS病例,总结其临床表现、影像学、肌肉活检、基因检测以及治疗转归结果。数据采用平均值、标准差、频率百分比的形式进行描述性统计分析。 结果: 35例MELAS患者发病年龄为(30.2±2.3)岁,20%有家族史。首发症状以肢体无力、肢体抽搐常见;神经肌肉系统症状以近端肌无力和运动不耐受为主;神经肌肉系统之外的其他系统症状以内分泌系统(糖尿病)受累最多。5例患者行头颅CT检查,示低密度灶4例、钙化灶2例。26例患者行头颅MRI示病灶区累及顶叶、基底节区、颞叶、枕叶、额叶等部位;较少累及幕下;其中12例出现不同程度的脑萎缩。10例患者行头颅1H-MRS,9例出现NAA峰减低,8例出现异常乳酸峰,6例同时出现NAA减低合并乳酸峰。31例患者行基因检测,25例检测到mt.3243A>G突变,其余6例为其他罕见突变。21例患者行肌肉活检,15例病理肌活检观察到代表线粒体异常增殖的破碎红纤维和代表氧化磷酸化障碍的COX酶缺陷型肌纤维。 结论: MELAS综合征患者的临床表现具有多样性及复杂性,早期症状容易误诊和漏诊。详细的临床病史、影像波谱和肌活检、基因检测是MELAS确诊的必要条件。.
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  • 文章类型: Journal Article
    虽然乳酸的细胞内-细胞外分布已被认为在健康和患病的大脑中起关键作用,缺乏非侵入性探测细胞内和细胞外空间乳酸的工具。这里,我们证明,通过体内扩散加权磁共振(MR)波谱测量乳酸的扩散,并将其与纯细胞内代谢物的扩散进行比较,细胞外和细胞内乳酸组分的非侵入性定量成为可能。更具体地说,我们检测了阿尔茨海默病APP/PS1小鼠模型中乳酸扩散的变化。与对照组相比,数据建模允许量化APP/PS1小鼠中减少的细胞外乳酸分数。这是用植入的酶-微电极定量证实的。扩散加权MR波谱量化细胞外-细胞内乳酸组分的能力为大脑代谢打开了一个窗口,包括老年痴呆症。
    While the intracellular-extracellular distribution of lactate has been suggested to play a critical role in the healthy and diseased brain, tools are lacking to noninvasively probe lactate in intracellular and extracellular spaces. Here, we show that, by measuring the diffusion of lactate with diffusion-weighted magnetic resonance (MR) spectroscopy in vivo and comparing it to the diffusion of purely intracellular metabolites, noninvasive quantification of extracellular and intracellular lactate fractions becomes possible. More specifically, we detect alterations of lactate diffusion in the APP/PS1 mouse model of Alzheimer\'s disease. Data modeling allows quantifying decreased extracellular lactate fraction in APP/PS1 mice as compared to controls, which is quantitatively confirmed with implanted enzyme-microelectrodes. The capability of diffusion-weighted MR spectroscopy to quantify extracellular-intracellular lactate fractions opens a window into brain metabolism, including in Alzheimer\'s disease.
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  • 文章类型: Journal Article
    α-甘露糖苷酶是由溶酶体α-甘露糖苷酶的遗传缺陷引起的,导致大脑和其他组织中存储病变的广泛存在。酶替代疗法是可用的,但未被批准用于治疗中枢神经系统,因为酶不能穿透血脑屏障.然而,智力障碍是这种疾病的主要表现;因此,需要免费治疗。虽然酶替代疗法进入大脑在技术上是可行的,随着时间的推移,它需要港口和频繁的管理,这在医学上很难管理。将腺相关病毒载体输注到脑脊液中是广泛靶向脑细胞的有吸引力的途径。我们在这里证明了通过将高剂量的AAV1-猫α-甘露糖苷酶(fMANB)通过回脑型α-甘露糖苷酶猫脑的大脑池注入CSF,可以对全球分布的储存病变进行广泛的症状后矫正。临床参数显著改善,通过非侵入性磁共振成像在死前记录了广泛的全球矫正。验尸分析显示了高水平的MANB活性和整个大脑中溶酶体储存损伤的逆转。因此,通过腺相关病毒载体基因治疗的CSF治疗似乎是全身性酶替代疗法的合适补充,可以潜在地治疗整个患者。
    Alpha-mannosidosis is caused by a genetic deficiency of lysosomal alpha-mannosidase, leading to the widespread presence of storage lesions in the brain and other tissues. Enzyme replacement therapy is available but is not approved for treating the CNS, since the enzyme does not penetrate the blood-brain barrier. However, intellectual disability is a major manifestation of the disease; thus, a complimentary treatment is needed. While enzyme replacement therapy into the brain is technically feasible, it requires ports and frequent administration over time that are difficult to manage medically. Infusion of adeno-associated viral vectors into the cerebrospinal fluid is an attractive route for broadly targeting brain cells. We demonstrate here the widespread post-symptomatic correction of the globally distributed storage lesions by infusion of a high dose of AAV1-feline alpha-mannosidase (fMANB) into the CSF via the cisterna magna in the gyrencephalic alpha-mannosidosis cat brain. Significant improvements in clinical parameters occurred, and widespread global correction was documented pre-mortem by non-invasive magnetic resonance imaging. Postmortem analysis demonstrated high levels of MANB activity and reversal of lysosomal storage lesions throughout the brain. Thus, CSF treatment by adeno-associated viral vector gene therapy appears to be a suitable complement to systemic enzyme replacement therapy to potentially treat the whole patient.
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  • 文章类型: Journal Article
    这项研究通过使用时域核磁共振(TD-NMR)弛豫测定法检查内部和表面区域,评估了暴露于不同老化技术的牛肉的水弛豫测定法。牛肉条腰部在真空(湿)下陈化,在真空下使用水分吸收剂(Abs),在真空下使用水分吸收剂和机械嫩化(AbsTend),或没有任何包装(干)。老化技术显着影响各种肉类参数,包括脱水,总损失,和肉表面的水分含量。横向(T2)弛豫时间比纵向(T1)弛豫时间提供了更敏感的指示肉水弛豫测量变化的指标。干样品在肉的表面和内部区域之间的T2信号中表现出明显的差异。特别是,对于内部区域,湿样品和干样品之间的信号区域存在显着差异,将Abs和AbsTend样品紧密地放置在干样品和湿样品之间。主成分分析支持这些发现:它表明分数图中的老化技术之间存在一些差异,但是在分析表面区域时差异更明显。此外,脱水和T2值之间有很强的相关性,导致基于老化技术的样本聚类。Abs和AbsTend样本之间的重叠,位于干样品和湿样品之间,表明这些处理方法具有生产具有湿肉和干肉中间特性的肉类的潜力。此外,嫩化不会导致更大的脱水。
    This study assessed water relaxometry of beef exposed to different ageing techniques by examining the inner and surface regions using time-domain nuclear magnetic resonance (TD-NMR) relaxometry. Beef strip loins were aged under vacuum (Wet), under vacuum using moisture absorbers (Abs), under vacuum using moisture absorbers and with mechanical tenderisation (AbsTend), or without any packaging (Dry). The ageing technique significantly influenced various meat parameters, including dehydration, total loss, and the moisture content of the meat surface. The transverse (T2) relaxation times provided a more sensitive indicator of the changes in meat water relaxometry than the longitudinal (T1) relaxation times. The Dry samples exhibited distinct differences in the T2 signals between the surface and inner regions of the meat. In particular, for the inner region, there were significant differences in signal areas between the Wet and Dry samples, and the Abs and AbsTend samples were positioned closely together between the Dry and Wet samples. The principal component analysis supported these findings: it indicated some differentiation among the ageing techniques in the score plot, but the differentiation was more pronounced when analysing the surface region. Additionally, there was a strong correlation between dehydration and the T2 values, leading to a clustering of the samples based on the ageing technique. The overlap between the Abs and AbsTend samples, situated between the Dry and Wet samples, suggests the potential of these treatments to produce meat with properties that are intermediate to Wet and Dry meat. Furthermore, tenderisation did not lead to greater dehydration.
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  • 文章类型: Journal Article
    背景:由于代谢物的数量众多,代谢组学数据通常很复杂,化学多样性,以及对样品制备的依赖性。这使得检测因子水平之间的显著差异并获得准确和可靠的数据具有挑战性。为了应对这些挑战,在代谢组学实验的设置中使用实验设计(DoE)技术至关重要。DoE技术可用于优化实验设计空间,确保从有限的样本空间中获得最大的信息量。
    目的:这篇综述旨在为产生代谢组学数据时应用DoE提供一个基线工作流程。
    这篇评论提供了对DoE理论的见解。ThereviewshowcasesthetheorybeingputintopracticebyhighingdifferentexamplesDoEbeingappliedinmetabolomicsthroughouttheliterature,考虑有针对性和无针对性的代谢组学研究,其中数据是使用核磁共振(NMR)光谱和质谱技术获得的。此外,这篇综述提出了目前尚未应用于代谢组学的DoE概念,强调这些是潜在的未来前景。
    BACKGROUND: Metabolomics data is often complex due to the high number of metabolites, chemical diversity, and dependence on sample preparation. This makes it challenging to detect significant differences between factor levels and to obtain accurate and reliable data. To address these challenges, the use of Design of Experiments (DoE) techniques in the setup of metabolomic experiments is crucial. DoE techniques can be used to optimize the experimental design space, ensuring that the maximum amount of information is obtained from a limited sample space.
    OBJECTIVE: This review aims at providing a baseline workflow for applying DoE when generating metabolomics data.
    UNASSIGNED: The review provides insights into the theory of DoE. The review showcases the theory being put into practice by highlighting different examples DoE being applied in metabolomics throughout the literature, considering both targeted and untargeted metabolomic studies in which the data was acquired using both nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry techniques. In addition, the review presents DoE concepts not currently being applied in metabolomics, highlighting these as potential future prospects.
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  • 文章类型: Journal Article
    已在水溶液中研究了阿替洛尔(ATE)和普萘洛尔(PRO)与β-环糊精的包合物。使用UV-vis检查和表征水溶液,荧光光谱法,和1HNMR。使用FTIR表征物理混合物。通过观察光谱性质的变化证实了包合物的存在。与β-CD的ATE复合物以1:1的比例表现出作为主体和(β-CD)作为客体的相互作用,包含常数K为2.09×10-3µM-1,由典型的双倒数图确定。同样,具有β-CD的PRO复合物同时以1:1和1:2的化学计量表现出作为主体和(β-CD)客体的相互作用;包涵常数为K1=5.80×10-5µM-1,K2=4.67×10-8µM-1,由典型的双倒数图确定。研究并优化了影响包合物形成的变量。基于由于包合物的形成而导致的荧光强度的增强,开发并验证了荧光分光光度法,用于测定每种药物的药物制剂。在λex/λem226/302nm和λex/λem231/338nm处对ATE和PRO的荧光强度进行定量。分别。在最佳反应情况下,在0.3-1.7μM的浓度范围内发现了良好的相关系数为0.9918和0.99的线性关系,ATE和PRO为0.1-1.1μM,分别。对于ATE和PRO,检测限(LOD)分别为0.13和0.01μM,分别。该方法有效地应用于两种药物的药物制剂分析。
    Atenolol (ATE) and propranolol (PRO) inclusion complexes with β-cyclodextrin have been investigated in aqueous solution. The aqueous solution was examined and characterized using UV-vis, fluorescence spectroscopy, and 1H NMR. The physical mixture was characterized using FTIR. The existence of inclusion complexes is confirmed by observing changes in spectroscopic properties. The ATE complex with β-CD exhibited an interaction as host and (β-CD) as a guest in a 1:1 ratio, with an inclusion constant K of 2.09 × 10-3 µM-1, as determined by the typical double-reciprocal graphs. Similarly, the PRO complex with β-CD exhibited an interaction as host and (β-CD) guest in 1:1 and 1:2 stoichiometry at the same time; the inclusion constants were K1 = 5.80 × 10-5 µM-1 and K2 = 4.67 × 10-8 µM-1, as determined by typical double-reciprocal graphs. The variables influencing the formation of the inclusion complexes were investigated and optimized. Based on the enhancement in fluorescence intensity due to the formation of inclusion complexes, spectrofluorometric methods were developed and validated for determination of each drug\'s pharmaceutical formulation. The quantification of the fluorescence intensity for ATE and PRO was conducted at λex/λem 226/302 nm and λex/λem 231/338 nm, respectively. Under the optimal reaction circumstances, linear relationships with good correlation coefficients of 0.9918 and 0.99 were found in the concentration ranges of 0.3-1.7 μM, and 0.1-1.1 μM for ATE and PRO, respectively. The limits of detection (LODs) were found to be 0.13 and 0.01 μM for ATE and PRO, respectively. The suggested approach was effectively applied to the analysis of both drugs\' pharmaceutical formulations.
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  • 文章类型: Journal Article
    对欧洲多孔脆弱牙本质的化学和生物探索提供了两种以前未描述的天然产物(1和2),连同三个已知的衍生物(3-5)。通过1D/2DNMR光谱分析证实了分离化合物的化学结构,质谱,并与报道的文献进行比较。根据ROESY光谱和时间依赖性密度泛函理论电子圆二色性(TDDFT-ECD)确定1的相对和绝对构型,分别。此外,重新审视了牙色酚(3)的绝对构型,并显示为(R)构型。评估所有分离的化合物的细胞毒性和抗菌活性,其中一些被发现具有弱到中等的抗菌活性,特别是针对革兰氏阳性细菌。
    A chemical and biological exploration of the European polypore Dentipellis fragilis afforded two previously undescribed natural products (1 and 2), together with three known derivatives (3-5). Chemical structures of the isolated compounds were confirmed through 1D/2D NMR spectroscopic analyses, mass spectrometry, and by comparison with the reported literature. The relative and absolute configurations of 1 were determined according to the ROESY spectrum and time-dependent density functional theory electronic circular dichroism (TDDFT-ECD), respectively. Furthermore, the absolute configuration of dentipellinol (3) was revisited and revealed to be of (R) configuration. All the isolated compounds were assessed for their cytotoxic and antimicrobial activities, with some being revealed to have weak to moderate antimicrobial activity, particularly against Gram-positive bacteria.
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  • 文章类型: Journal Article
    一系列新的手性4,5-二氢-1H-[1,2,4]-三唑啉分子,具有β-β-吡喃葡萄糖苷附属物,通过各种肼酰氯和碳水化合物席夫碱之间的1,3-偶极环加成反应合成。通过高分辨率质谱(HRMS)和振动光谱法鉴定了分离的对映体纯的三唑啉(8a-j)。随后,通过NMR光谱技术阐明了它们的溶液结构。衍生物8b的单晶X射线分析为该化合物的3-D结构提供了明确的证据,并揭示了晶格中重要的分子间力。此外,它确认了新生成的立体声中心的(S)配置。研究了选定的目标化合物在60种癌细胞系中的抗肿瘤活性,衍生物8c显示出最高的效力,特别是针对白血病。此外,观察到取代基依赖性抗真菌和抗菌行为。
    A new series of chiral 4,5-dihydro-1H-[1,2,4]-triazoline molecules, featuring a β-ᴅ-glucopyranoside appendage, were synthesized via a 1,3-dipolar cycloaddition reaction between various hydrazonyl chlorides and carbohydrate Schiff bases. The isolated enantiopure triazolines (8a-j) were identified through high-resolution mass spectrometry (HRMS) and vibrational spectroscopy. Subsequently, their solution structures were elucidated through NMR spectroscopic techniques. Single-crystal X-ray analysis of derivative 8b provided definitive evidence for the 3-D structure of this compound and revealed important intermolecular forces in the crystal lattice. Moreover, it confirmed the (S)-configuration at the newly generated stereo-center. Selected target compounds were investigated for anti-tumor activity in 60 cancer cell lines, with derivative 8c showing the highest potency, particularly against leukemia. Additionally, substituent-dependent anti-fungal and anti-bacterial behavior was observed.
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