Functional assays

功能测定
  • 文章类型: Journal Article
    新精神活性物质(NPS),以前也称为“设计药物”,通常是现有精神活性药物的合成衍生物,其多样化的结构旨在规避立法和检测,而其影响模仿传统滥用药物的影响。其中,在过去的几年中,新的合成阿片类药物(NSO)是增长最快的NPS子类之一,自2009年以来,在欧洲检测到超过70种新化合物。除了兴奋和镇痛等作用,阿片类药物的使用与严重的副作用如便秘和呼吸抑制有关。μ-阿片受体(MOR),A类G蛋白偶联受体,负责大部分的治疗和不良阿片类药物的影响。了解阿片类药物的药理学可以帮助实施积极的减少伤害的策略,以及开发更安全的阿片类镇痛药。这篇综述旨在收集有关新型合成阿片类药物的体外MOR激动作用的现有信息,特别关注监测G蛋白和β-抑制蛋白途径的功能测定。
    New psychoactive substances (NPS), formerly also referred to as \"designer drugs\", are often synthetic derivatives of existing psychoactive drugs, their diverse structures aiming at circumventing legislation and detection while their effects mimic those of traditional drugs of abuse. Of these, the group of new synthetic opioids (NSOs) has been one of the fastest growing NPS subclasses in the last couple of years, with over 70 new compounds detected in Europe since 2009. Apart from effects such as euphoria and analgesia, opioid use is associated with severe side effects such as constipation and respiratory depression. The μ-opioid receptor (MOR), a class A G protein-coupled receptor, is responsible for most of the therapeutic and adverse opioid effects. Insight into the pharmacology of opioids can aid the implementation of proactive harm reduction strategies, as well as the development of safer opioid analgesics. This review aims at assembling the available information on in vitro MOR agonism of the emerging class of new synthetic opioids, with a special focus on functional assays monitoring G protein and β-arrestin pathways.
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  • 文章类型: Journal Article
    Cancer stem cells (CSCs) are a rare tumor subpopulation with high differentiation, proliferative and tumorigenic potential compared to the remaining tumor population. CSCs were first discovered by Bonnet and Dick in 1997 in acute myeloid leukemia. The identification and isolation of these cells in this pioneering study were carried out through the flow cytometry, exploiting the presence of specific cell surface molecular markers (CD34+/CD38-). In the following years, different strategies and projects have been developed for the study of CSCs, which are basically divided into surface markers assays and functional assays; some of these techniques also allow working with a cellular model that better mimics the tumor architecture. The purpose of this mini review is to summarize and briefly describe all the current methods used for the identification, isolation and enrichment of CSCs, describing, where possible, the molecular basis, the advantages and disadvantages of each technique with a particular focus on those that offer a three-dimensional culture.
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  • 文章类型: Journal Article
    功能性血小板活化试验,如5-羟色胺释放测定(SRA),是诊断肝素诱导的血小板减少症(HIT)的金标准。最近,已经描述了使用添加血小板因子4(PF4)的血小板活化测定,并提出了改善的敏感性.尚未进行这些测定的直接比较。
    我们比较了三种PF4增强血小板活化试验的性能特征,PF4/肝素-SRA(PF4/HEP-SRA),PF4-SRA,和P-选择素表达测定(PEA),在一个单一的参考实验室。
    使用来自两组患者的血清样品。转诊队列(n=84)包括先前已接受HIT常规诊断测试并使用SRA测试为阳性或阴性的样品。临床队列(n=101)由来自具有临床证实的HIT的患者的样品组成,所述患者的血清含有血小板活化抗体。我们同时在PF4增强的基于SRA的测定中测试了所有样品(PF4/hep-SRA,PF4-SRA)和基于流式细胞术的PEA。
    在转诊队列中,3个PF4增强试验鉴定出先前在SRA中被确定为阳性的所有样品.然而,PF4/hep-SRA的特异性为96.6%,PF4-SRA为84.7%,PEA为67.8%。在样本的临床队列中,所有基于SRA的检测均表现出高性能特征(>92.1%的灵敏度,>98.4%特异性)。PEA的敏感性和特异性最低,65.8%和63.5%,分别;但使用预选的血小板供体提高到92.1%和96.8%。
    当血小板供体被预选时,所有PF4增强的测定显示出良好的性能特征。应在多个实验室之间进行进一步比较,以就最佳HIT诊断测试达成共识。
    Functional platelet activation assays, such as the serotonin release assay (SRA), are the gold standard for the diagnosis of heparin-induced thrombocytopenia (HIT). Recently, platelet activation assays using added platelet factor 4 (PF4) have been described and suggest improved sensitivity. Direct comparisons of these assays have not been performed.
    We compare the performance characteristics of three PF4-enhanced platelet activation assays, the PF4/heparin-SRA (PF4/hep-SRA), the PF4-SRA, and the P-selectin expression assay (PEA), at a single reference laboratory.
    Serum samples from two cohorts of patients were used. The referral cohort (n = 84) included samples that had previously undergone routine diagnostic testing for HIT and tested positive or negative using the SRA. The clinical cohort (n = 101) consisted of samples from patients with clinically confirmed HIT whose serum contained platelet-activating antibodies. We simultaneously tested all samples in PF4-enhanced SRA-based assays (PF4/hep-SRA, PF4-SRA) and the flow cytometry-based PEA.
    In the referral cohort, the three PF4-enhanced assays identified all samples that were previously determined to be positive in the SRA. However, specificity of the PF4/hep-SRA was 96.6%, the PF4-SRA was 84.7%, and the PEA was 67.8%. In the clinical cohort of samples, all SRA-based assays displayed high performance characteristics (>92.1% sensitivity, >98.4% specificity). Sensitivity and specificity of the PEA was the lowest, 65.8% and 63.5%, respectively; but improved to 92.1% and 96.8% using preselected platelet donors.
    All PF4-enhanced assays demonstrated good performance characteristics when platelet donors were preselected. Further comparisons across multiple laboratories should be conducted for consensus on optimal HIT diagnostic testing.
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  • 文章类型: Journal Article
    Unraveling the sense of smell relies on understanding how odorant receptors recognize odorant molecules. Given the vastness of the odorant chemical space and the complexity of the odorant receptor space, computational methods are in line to propose rules connecting them. We hereby propose an in silico and an in vitro approach, which, when combined are extremely useful for assessing chemogenomic links. In this chapter we mostly focus on the mining of already existing data through machine learning methods. This approach allows establishing predictions that map the chemical space and the receptor space. Then, we describe the method for assessing the activation of odorant receptors and their mutants through luciferase reporter gene functional assays.
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  • 文章类型: Journal Article
    Mantle Cell Lymphoma (MCL) is often associated with progression, temporary response to therapy and a high relapse rate over time resulting in a poor long-term prognosis. Because MCL is classified as an incurable disease, therapeutic resistance is of great interest. However, knowledge about the biological mechanisms underlying resistance associated with MCL therapies and about associated predictors remains poor. The REFRACT-LYMA Cohort, a multicenter prospective cohort of patients with MCL, is set up to address this limitation. We here describe the study background, design and methods used for this cohort.
    The REFRACT-LYMA Cohort Study aims at including all patients (>18 years old) who are diagnosed with MCL in any stage of the disease and treated in specialized oncology centers in three public hospitals in Northwestern France. Any such patient providing a signed informed consent is included. All subjects are followed up indefinitely, until refusal to participate in the study, emigration or death. The REFRACT-LYMA follow-up is continuous and collects data on socio-economic status, medical status, MCL therapies and associated events (resistance, side effects). Participants also complete standardized quality of life (QOL) questionnaires. In addition, participants are asked to donate blood samples that will support ex vivo analysis of expression and functional assays required to uncover predictive biomarkers and companion diagnostics. If diagnostic biopsies are performed during the course of the disease, extracted biological samples are kept in a dedicated biobank.
    To our knowledge, the REFRACT-LYMA Cohort Study is the first prospective cohort of patients with MCL for whom \"real-life\" medical, epidemiological and QOL data is repeatedly collected together with biological samples during the course of the disease. The integrative cohort at mid-term will be unique at producing a large variety of data that can be used to conceive the most effective personalized therapy for MCL patients. Additionally, the REFRACT-LYMA Cohort puts the medical care of MCL patients in a health and pharmacoeconomic perspective.
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