Disease Outbreaks

疾病爆发
  • 文章类型: Journal Article
    背景:2022年埃博拉病毒病(EVD)爆发时,乌干达仍在与COVID-19大流行的社会和心理挑战作斗争;使医疗保健专业人员(HCP)面临更高的心理困扰风险。HCP中的心理困扰会导致工作场所生产力下降和患者管理不力。本研究旨在调查和了解2022年EVD爆发后乌干达西南部姆巴拉拉市HCPS的心理困扰。
    方法:我们通过方便地从乌干达西南部姆巴拉拉市的一个私人和一个公共卫生机构取样,登记了200个HCP,采用横截面收敛平行混合方法,同时收集定性和定量数据。定量数据,利用凯斯勒心理困扰(K10)量表,为我们提供了HCPs中心理困扰患病率的定量测量,并使用STATA版本16进行了分析。定性数据,另一方面,提供了对自然更深刻的见解,感知,以及影响这种痛苦的环境因素,并使用紧急主题分析进行了分析。
    结果:心理困扰的患病率为59.5%,女性(63.9%)高于男性(36.1%)。HCPs生动地表达了痛苦和焦虑,人们越来越怀疑每个病人都可能是埃博拉病毒携带者,在工作场所产生普遍的不安全感。然而,疫情对教育产生了影响,人们对宣布另一次埃博拉病毒病疫情的担忧各不相同,HCP表达焦虑,绝望,以及对该国对潜在疫情的管理不满。
    结论:由于2022年EVD大流行,乌干达西南部的HCP经历了高水平的心理困扰。HCPs表达了广泛的感情,如恐惧,焦虑,绝望,悲观,以及对全国各地疫情处理方式的不满。我们建议实施针对HCPs独特需求的全面社会心理支持计划,包括咨询服务,压力管理研讨会,和对等支持网络。
    BACKGROUND: The 2022 Ebola Virus Disease (EVD) outbreak occurred at a time when Uganda was still battling the social and psychological challenges of the COVID-19 pandemic; placing health care professionals (HCPs) at a much higher risk of developing psychological distress. Psychological distress among HCPs can cause decreased workplace productivity and ineffective management of their patients. The current study aimed to investigate and understand psychological distress among HCPS in Mbarara city in Southwestern Uganda following the 2022 EVD outbreak.
    METHODS: We enrolled 200 HCPs through convenient sampling from one private and one public health facility in Mbarara city in Southwestern Uganda, in a cross-sectional convergent parallel mixed method approach where qualitative and quantitative data were collected concurrently. Quantitative data, utilizing the Kessler Psychological Distress (K10) Scale, provided us with a quantitative measure of the prevalence of psychological distress among HCPs, and were analyzed using STATA version 16. Qualitative data, on the other hand, offered deeper insights into the nature, perceptions, and contextual factors influencing this distress, and were analyzed using emergent theme analysis.
    RESULTS: The prevalence of psychological distress was 59.5% and it was higher among females (63.9%) compared to males (36.1%). HCPs vividly expressed distress and anxiety, with heightened suspicion that every patient might be an EVD carrier, creating a pervasive sense of unsafety in the workplace. However, the outbreak had an educational affect where concerns about the announcement of another EVD outbreak were diverse, with HCPs expressing anxiety, despair, and dissatisfaction with the country\'s management of potential outbreaks.
    CONCLUSIONS: High levels of psychological distress were experienced by HCPs in Southwestern Uganda as a result of the 2022 EVD pandemic. HCPs express a wide range of feelings, such as dread, anxiety, despair, pessimism, and discontent with the way the outbreaks are handled throughout the nation. We recommend implementation of comprehensive psychosocial support programs tailored to the unique needs of HCPs, including counseling services, stress management workshops, and peer support networks.
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  • 文章类型: Journal Article
    背景:含有军团菌的冷却塔是军团菌病暴发的高风险来源。在疫情调查期间从航拍图像手动定位冷却塔需要专业知识,是劳动密集型的,并且容易出错。我们旨在训练一个深度学习计算机视觉模型,以自动检测空中可见的冷却塔。
    方法:在2021年1月1日至31日之间,我们提取了费城的卫星视图图像(PN,美国)和纽约州(NY,美国)从谷歌地图和带注释的冷却塔创建训练数据集。我们使用合成数据和模型辅助标记其他城市来增强训练数据。使用包含7292个冷却塔的2051图像,我们使用YOLOv5训练了一个两阶段模型,该模型可以检测图像中的物体,和EfficientNet-b5,一种对图像进行分类的模型。我们评估了模型的敏感性和阳性预测值(PPV)的主要结果,并在548张图像的测试数据集上进行了手动标记,包括来自两个没有参加培训的城市(波士顿[马,美国]和雅典[GA,美国])。我们将模型的搜索速度与四位流行病学家的手动搜索速度进行了比较。
    结果:该模型确定了可见的冷却塔,其灵敏度为95·1%(95%CI94·0-96·1),PPV为90·1%(95%CI90·0-90·2)在纽约市和费城。在波士顿,灵敏度为91·6%(89·2~93·7),PPV为80·8%(80·5~81·2)。在雅典,灵敏度为86·9%(75·8~94·2),PPV为85·5%(84·2~86·7)。对于纽约市包含45个街区(0·26平方英里)的区域,该模型的搜索速度比人类调查人员快600倍以上(7·6s;351个潜在冷却塔)(平均83·75分钟[SD29·5];平均310·8冷却塔[42·2])。
    结论:该模型可用于通过从航空图像中识别冷却塔来加速军团病暴发期间的调查和源头控制。有可能防止额外的疾病传播。该模型已经被公共卫生团队用于疫情调查和初始化冷却塔登记处,这被认为是预防和应对军团病爆发的最佳实践。
    背景:无。
    BACKGROUND: Cooling towers containing Legionella spp are a high-risk source of Legionnaires\' disease outbreaks. Manually locating cooling towers from aerial imagery during outbreak investigations requires expertise, is labour intensive, and can be prone to errors. We aimed to train a deep learning computer vision model to automatically detect cooling towers that are aerially visible.
    METHODS: Between Jan 1 and 31, 2021, we extracted satellite view images of Philadelphia (PN, USA) and New York state (NY, USA) from Google Maps and annotated cooling towers to create training datasets. We augmented training data with synthetic data and model-assisted labelling of additional cities. Using 2051 images containing 7292 cooling towers, we trained a two-stage model using YOLOv5, a model that detects objects in images, and EfficientNet-b5, a model that classifies images. We assessed the primary outcomes of sensitivity and positive predictive value (PPV) of the model against manual labelling on test datasets of 548 images, including from two cities not seen in training (Boston [MA, USA] and Athens [GA, USA]). We compared the search speed of the model with that of manual searching by four epidemiologists.
    RESULTS: The model identified visible cooling towers with 95·1% sensitivity (95% CI 94·0-96·1) and a PPV of 90·1% (95% CI 90·0-90·2) in New York City and Philadelphia. In Boston, sensitivity was 91·6% (89·2-93·7) and PPV was 80·8% (80·5-81·2). In Athens, sensitivity was 86·9% (75·8-94·2) and PPV was 85·5% (84·2-86·7). For an area of New York City encompassing 45 blocks (0·26 square miles), the model searched more than 600 times faster (7·6 s; 351 potential cooling towers identified) than did human investigators (mean 83·75 min [SD 29·5]; mean 310·8 cooling towers [42·2]).
    CONCLUSIONS: The model could be used to accelerate investigation and source control during outbreaks of Legionnaires\' disease through the identification of cooling towers from aerial imagery, potentially preventing additional disease spread. The model has already been used by public health teams for outbreak investigations and to initialise cooling tower registries, which are considered best practice for preventing and responding to outbreaks of Legionnaires\' disease.
    BACKGROUND: None.
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  • 文章类型: Journal Article
    背景:世界卫生组织宣布水痘为国际公共卫生紧急事件。自2022年1月1日以来,中国已跻身全球受水痘疫情影响最大的十大国家之列。然而,缺乏关于水痘的空间流行病学研究,这对于准确绘制疾病的空间分布和聚类至关重要。
    目的:本研究旨在提供地理上准确的视觉证据,以确定预防和控制水痘的优先区域。
    方法:在2023年6月至11月期间,从中国大陆31个省(台湾除外)收集了当地确诊的水痘病例,澳门,和香港。时空流行病学分析,包括空间自相关和回归分析,进行了研究,以确定水痘发作率的时空特征和聚类模式及其与社会人口统计学和社会经济因素的空间关系。
    结果:自2023年6月至11月,中国大陆30个省共报告了1610例本地确诊的水痘病例,导致每1000万人中11.40人的攻击率。全局空间自相关分析表明,7月(MoranI=0.0938;P=.08),8月(MoranI=0.1276;P=.08),和9月(MoranI=0.0934;P=.07),水痘的发作率表现出集群模式和正的空间自相关。Getis-OrdGi*统计数据确定了北京天花发作率的热点,天津,上海,江苏,和海南。从6月到10月,北京和天津是一致的热点地区。通过Getis-OrdGi*统计,未检测到具有低天花发作率的冷点。当地的MoranI统计数据确定了广东省的高-高(HH)聚集的天花攻击率,北京,和天津。广东省从6月到11月一直表现出HH集群,而北京和天津在7月至9月被确定为HH集群。低-低集群主要位于内蒙古,新疆,西藏,青海,和甘肃。普通最小二乘回归模型显示,天花累积发病率与城市人口比例呈显著正相关(t0.05/2,1=2.4041P=.02),人均国内生产总值(t0.05/2,1=2.6955;P=0.01),人均可支配收入(t0.05/2,1=2.8303;P=.008),人均消费支出(PCCE;t0.05/2,1=2.752;P=0.01),和PCCE用于医疗保健(t0.05/2,1=2.5924;P=0.01)。地理加权回归模型表明,水痘累积发病率与城市人口比例之间存在正相关和空间异质性,人均国内生产总值,人均可支配收入,PCCE,在中国北方和东北地区具有较高的R2值。
    结论:通过局部空间自相关分析确定的水痘发作率的热点和HH聚类应被视为精确预防和控制水痘的关键领域。具体来说,广东,北京,天津市应优先进行水痘防控。这些发现提供了地理上精确和可视化的证据,以帮助确定有针对性的预防和控制的关键领域。
    BACKGROUND: The World Health Organization declared mpox an international public health emergency. Since January 1, 2022, China has been ranked among the top 10 countries most affected by the mpox outbreak globally. However, there is a lack of spatial epidemiological studies on mpox, which are crucial for accurately mapping the spatial distribution and clustering of the disease.
    OBJECTIVE: This study aims to provide geographically accurate visual evidence to determine priority areas for mpox prevention and control.
    METHODS: Locally confirmed mpox cases were collected between June and November 2023 from 31 provinces of mainland China excluding Taiwan, Macao, and Hong Kong. Spatiotemporal epidemiological analyses, including spatial autocorrelation and regression analyses, were conducted to identify the spatiotemporal characteristics and clustering patterns of mpox attack rate and its spatial relationship with sociodemographic and socioeconomic factors.
    RESULTS: From June to November 2023, a total of 1610 locally confirmed mpox cases were reported in 30 provinces in mainland China, resulting in an attack rate of 11.40 per 10 million people. Global spatial autocorrelation analysis showed that in July (Moran I=0.0938; P=.08), August (Moran I=0.1276; P=.08), and September (Moran I=0.0934; P=.07), the attack rates of mpox exhibited a clustered pattern and positive spatial autocorrelation. The Getis-Ord Gi* statistics identified hot spots of mpox attack rates in Beijing, Tianjin, Shanghai, Jiangsu, and Hainan. Beijing and Tianjin were consistent hot spots from June to October. No cold spots with low mpox attack rates were detected by the Getis-Ord Gi* statistics. Local Moran I statistics identified a high-high (HH) clustering of mpox attack rates in Guangdong, Beijing, and Tianjin. Guangdong province consistently exhibited HH clustering from June to November, while Beijing and Tianjin were identified as HH clusters from July to September. Low-low clusters were mainly located in Inner Mongolia, Xinjiang, Xizang, Qinghai, and Gansu. Ordinary least squares regression models showed that the cumulative mpox attack rates were significantly and positively associated with the proportion of the urban population (t0.05/2,1=2.4041 P=.02), per capita gross domestic product (t0.05/2,1=2.6955; P=.01), per capita disposable income (t0.05/2,1=2.8303; P=.008), per capita consumption expenditure (PCCE; t0.05/2,1=2.7452; P=.01), and PCCE for health care (t0.05/2,1=2.5924; P=.01). The geographically weighted regression models indicated a positive association and spatial heterogeneity between cumulative mpox attack rates and the proportion of the urban population, per capita gross domestic product, per capita disposable income, and PCCE, with high R2 values in north and northeast China.
    CONCLUSIONS: Hot spots and HH clustering of mpox attack rates identified by local spatial autocorrelation analysis should be considered key areas for precision prevention and control of mpox. Specifically, Guangdong, Beijing, and Tianjin provinces should be prioritized for mpox prevention and control. These findings provide geographically precise and visualized evidence to assist in identifying key areas for targeted prevention and control.
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  • 文章类型: Journal Article
    威胁生命的病毒大流行会对医护人员的工作动机产生不利影响。然而,没有研究在相同环境和设计的不同大流行期间检查这种影响.这项研究旨在揭示最近两次大流行之间与工作意愿和犹豫相关的因素的异同。H1N1流感和COVID-19在同一家医院,使用相同的问卷。
    日本一家医院的医护人员填写了一份关于H1N1流感(n=1061)和COVID-19(n=1111)大流行期间基本特征和压力相关问题的问卷。进行了Logistic回归分析,以确定个人特征和与压力相关的问题对员工表现出强烈或微弱的工作动机或犹豫的可能性的影响。
    被医院保护的感觉是显着减少犹豫和增加工作动力的唯一因素,在这两种流行病中,女性对工作的犹豫明显多于男性。
    医院管理人员和政府官员应将重点放在增加组织支持和照顾女性工作者上,以保持医护人员在未来大流行期间工作的动力。
    UNASSIGNED: Pandemics of life-threatening viruses have detrimental impacts on the motivation of healthcare workers to work. However, no study has examined this impact during different pandemics with the same setting and design. This study aimed to reveal similarities and differences in factors associated with willingness and hesitation to work between two recent pandemics, H1N1 influenza and COVID-19, in the same hospital, using the same questionnaire.
    UNASSIGNED: Healthcare workers in one hospital in Japan completed a questionnaire on basic characteristics and stress-related questions during the H1N1 influenza (n = 1061) and the COVID-19 (n = 1111) pandemics. Logistic regressions were performed to ascertain the effect of personal characteristics and stress-related questions on the likelihood that employees showed strong or weak motivation or hesitation to work.
    UNASSIGNED: The feeling of being protected by the hospital was the only factor that significantly decreased hesitation and increased motivation to work, and females felt significantly more hesitation to work than males did in both pandemics.
    UNASSIGNED: Hospital managers and government officers should focus on increasing organizational support and caring for female workers to maintain healthcare workers\' motivation to work during future pandemics.
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  • 文章类型: Journal Article
    居住老年人护理设施(RACF)中发生的COVID-19死亡人数不成比例,需要更好的证据来针对COVID-19干预措施以预防死亡。本研究使用基于代理的模型来评估社区患病率的作用,疫苗接种策略,维多利亚州RACF对COVID-19结局的非药物干预(NPI),澳大利亚。
    该模型随时间模拟了RACF中的爆发,并根据爆发规模的分布进行了校准,爆发持续时间,和2022年维多利亚州RACF的病死率。估计每天对RACF的入侵次数符合总死亡人数和随时间和社区患病率的诊断。总感染,诊断,在2023年7月至2024年6月的不同情景下,估计了RACF的死亡人数:社区流行波假设(幅度和频率);RACF疫苗接种策略(6个月,12个月,没有进一步的疫苗);其他非药物干预措施(10、25、50%的疗效);并减少了侵入(30%或60%)。
    总的RACF结果与累积的社区感染和侵入率成正比,建议战略访问/工作人员政策或基于社区的干预措施以减少死亡的潜力。流行浪潮发生时接种疫苗的时间至关重要;与6个月的助推器相比,在2023年7月至2024年6月期间,12个月的助推器的死亡人数增加了约1.2倍,没有进一步的助推器的死亡人数增加了约1.6倍。额外的NPI,即使只有10-25%的功效,可能导致RACF死亡减少13-31%。
    未来的社区流行浪潮模式是未知的,但将是RACF结果的主要驱动因素。保持近期疫苗接种的高覆盖率,尽量减少入侵,增加NPI会对累积感染和死亡产生重大影响。
    UNASSIGNED: A disproportionate number of COVID-19 deaths occur in Residential Aged Care Facilities (RACFs), where better evidence is needed to target COVID-19 interventions to prevent mortality. This study used an agent-based model to assess the role of community prevalence, vaccination strategies, and non-pharmaceutical interventions (NPIs) on COVID-19 outcomes in RACFs in Victoria, Australia.
    UNASSIGNED: The model simulated outbreaks in RACFs over time, and was calibrated to distributions for outbreak size, outbreak duration, and case fatality rate in Victorian RACFs over 2022. The number of incursions to RACFs per day were estimated to fit total deaths and diagnoses over time and community prevalence.Total infections, diagnoses, and deaths in RACFs were estimated over July 2023-June 2024 under scenarios of different: community epidemic wave assumptions (magnitude and frequency); RACF vaccination strategies (6-monthly, 12-monthly, no further vaccines); additional non-pharmaceutical interventions (10, 25, 50% efficacy); and reduction in incursions (30% or 60%).
    UNASSIGNED: Total RACF outcomes were proportional to cumulative community infections and incursion rates, suggesting potential for strategic visitation/staff policies or community-based interventions to reduce deaths. Recency of vaccination when epidemic waves occurred was critical; compared with 6-monthly boosters, 12-monthly boosters had approximately 1.2 times more deaths and no further boosters had approximately 1.6 times more deaths over July 2023-June 2024. Additional NPIs, even with only 10-25% efficacy, could lead to a 13-31% reduction in deaths in RACFs.
    UNASSIGNED: Future community epidemic wave patterns are unknown but will be major drivers of outcomes in RACFs. Maintaining high coverage of recent vaccination, minimizing incursions, and increasing NPIs can have a major impact on cumulative infections and deaths.
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  • 文章类型: Journal Article
    背景:目前,对医院暴发的检测和控制取决于可变和人员密集的监测方法。对卫生保健相关病原体暴发的自动统计监测是否允许更早的遏制努力来减少暴发的规模尚不清楚。
    方法:我们在一个更大的医疗保健系统内的82家社区医院进行了一项整群随机试验。当感染预防计划发现爆发时,所有医院都遵循爆发响应协议。一半的医院还使用了微生物数据的统计监测,这提醒了感染预防计划的爆发。统计监测也应用于控制医院的微生物学数据,而没有提醒他们的感染预防计划。主要结果是爆发后发生的额外病例数。分析评估了随机组之间干预期(2019年7月至2022年1月)与基线期(2017年2月至2019年1月)之间的差异。事后分析分别评估了2019年冠状病毒病前期(新冠肺炎)和新冠肺炎大流行干预期。
    结果:实时警报并未显着减少额外爆发病例的数量(干预期与基线相比:统计监测相对率[RR]=1.41,对照RR=1.81;差异差异,0.78;95%置信区间[CI],0.40至1.52;P=0.46)。仅将疾病前期干预与基线期进行比较,统计暴发监测组的额外病例减少了64.1%(统计监测RR=0.78,对照RR=2.19;差异差异,0.36;95%CI,0.13至0.99)。大流行期与基线期之间没有类似的相关性(统计监测RR=1.56,对照RR=1.66;差异差异,0.94;95%CI,0.46至1.92)。
    结论:在大流行持续的背景下,使用统计监测自动检测医院暴发并没有减少总体暴发规模。(由疾病控制和预防中心资助;ClinicalTrials.gov编号,NCT04053075。HCA为HCAHealthcare参与研究提供了实物支持。).
    BACKGROUND: Detection and containment of hospital outbreaks currently depend on variable and personnel-intensive surveillance methods. Whether automated statistical surveillance for outbreaks of health care-associated pathogens allows earlier containment efforts that would reduce the size of outbreaks is unknown.
    METHODS: We conducted a cluster-randomized trial in 82 community hospitals within a larger health care system. All hospitals followed an outbreak response protocol when outbreaks were detected by their infection prevention programs. Half of the hospitals additionally used statistical surveillance of microbiology data, which alerted infection prevention programs to outbreaks. Statistical surveillance was also applied to microbiology data from control hospitals without alerting their infection prevention programs. The primary outcome was the number of additional cases occurring after outbreak detection. Analyses assessed differences between the intervention period (July 2019 to January 2022) versus baseline period (February 2017 to January 2019) between randomized groups. A post hoc analysis separately assessed pre-coronavirus disease 2019 (Covid-19) and Covid-19 pandemic intervention periods.
    RESULTS: Real-time alerts did not significantly reduce the number of additional outbreak cases (intervention period versus baseline: statistical surveillance relative rate [RR]=1.41, control RR=1.81; difference-in-differences, 0.78; 95% confidence interval [CI], 0.40 to 1.52; P=0.46). Comparing only the prepandemic intervention with baseline periods, the statistical outbreak surveillance group was associated with a 64.1% reduction in additional cases (statistical surveillance RR=0.78, control RR=2.19; difference-in-differences, 0.36; 95% CI, 0.13 to 0.99). There was no similarly observed association between the pandemic versus baseline periods (statistical surveillance RR=1.56, control RR=1.66; difference-in-differences, 0.94; 95% CI, 0.46 to 1.92).
    CONCLUSIONS: Automated detection of hospital outbreaks using statistical surveillance did not reduce overall outbreak size in the context of an ongoing pandemic. (Funded by the Centers for Disease Control and Prevention; ClinicalTrials.gov number, NCT04053075. Support for HCA Healthcare\'s participation in the study was provided in kind by HCA.).
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  • 文章类型: Journal Article
    目的:调查2022年日本脑炎爆发后,维多利亚州北部日本脑炎病毒(JEV)抗体的分布和流行情况(作为过去感染的证据),寻求确定具有特殊感染风险的人群;调查两种相关黄病毒抗体的分布和流行情况,墨累河谷脑炎病毒(MVEV)和西尼罗河病毒Kunjin亚型(KUNV)。
    方法:横断面血清调查(国家JEV血清监测计划的一部分)。
    方法:维多利亚州北部三个地方公共卫生单位(OvensMurray,古尔本山谷,LoddonMallee),2022年8月8日-12月1日。
    方法:人们在病理收集中心机会主义招募,并通过社区外展和广告定向招募。接种日本脑炎疫苗或被诊断患有日本脑炎的人没有资格参加,在JEV流行的国家出生的人也是如此。
    方法:JEVIgG抗体的血清阳性率,总体上和选定的兴趣因素(职业,水体暴露,娱乐活动和地点,接触动物,保护措施)。
    结果:招募了813名参与者(中位年龄,59年[四分位数范围,42-69岁];496名女性[61%]);27名JEVIgG血清阳性(3.3%;95%置信区间[CI],2.2-4.8%)(中位年龄,73年[四分位数范围,63-78岁];13名女性[48%];无IgM血清阳性。在所有招募地点确定了JEVIgG血清阳性参与者,包括那些没有确诊的日本脑炎病例。与JEVIgG血清阳性相关的唯一危险因素是年龄(每年:患病率比值比[POR],1.07;95%CI,1.03-1.10)和暴露于野猪(POR,21;95%CI,1.7-190)。MVEV抗体的血清阳性率为3.0%(95%CI,1.9-4.5%;760名参与者中有23名),和KUNV抗体3.3%(95%CI,2.1-4.8%;761个中的25个)。
    结论:居住在维多利亚州北部的人们很容易受到未来的JEV感染,但很少有危险因素与感染有关。额外的预防战略,包括扩大疫苗资格,可能需要保护该地区的人们免受日本脑炎的侵害。
    OBJECTIVE: To investigate the distribution and prevalence of Japanese encephalitis virus (JEV) antibody (as evidence of past infection) in northern Victoria following the 2022 Japanese encephalitis outbreak, seeking to identify groups of people at particular risk of infection; to investigate the distribution and prevalence of antibodies to two related flaviviruses, Murray Valley encephalitis virus (MVEV) and West Nile virus Kunjin subtype (KUNV).
    METHODS: Cross-sectional serosurvey (part of a national JEV serosurveillance program).
    METHODS: Three northern Victorian local public health units (Ovens Murray, Goulburn Valley, Loddon Mallee), 8 August - 1 December 2022.
    METHODS: People opportunistically recruited at pathology collection centres and by targeted recruitment through community outreach and advertisements. People vaccinated against or who had been diagnosed with Japanese encephalitis were ineligible for participation, as were those born in countries where JEV is endemic.
    METHODS: Seroprevalence of JEV IgG antibody, overall and by selected factors of interest (occupations, water body exposure, recreational activities and locations, exposure to animals, protective measures).
    RESULTS: 813 participants were recruited (median age, 59 years [interquartile range, 42-69 years]; 496 female [61%]); 27 were JEV IgG-seropositive (3.3%; 95% confidence interval [CI], 2.2-4.8%) (median age, 73 years [interquartile range, 63-78 years]; 13 female [48%]); none were IgM-seropositive. JEV IgG-seropositive participants were identified at all recruitment locations, including those without identified cases of Japanese encephalitis. The only risk factors associated with JEV IgG-seropositivity were age (per year: prevalence odds ratio [POR], 1.07; 95% CI, 1.03-1.10) and exposure to feral pigs (POR, 21; 95% CI, 1.7-190). The seroprevalence of antibody to MVEV was 3.0% (95% CI, 1.9-4.5%; 23 of 760 participants), and of KUNV antibody 3.3% (95% CI, 2.1-4.8%; 25 of 761).
    CONCLUSIONS: People living in northern Victoria are vulnerable to future JEV infection, but few risk factors are consistently associated with infection. Additional prevention strategies, including expanding vaccine eligibility, may be required to protect people in this region from Japanese encephalitis.
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  • 文章类型: Journal Article
    在SEIR模型中分析E/S(暴露/易感)比率。该比率在了解2014-2016年塞拉利昂和几内亚埃博拉疫情期间的疫情动态方面发挥着关键作用。根据初始易感群体(S(0)),该比率的最大值出现在时间相关再现数(Rt)等于1之前或之后。证明了对应于各种孵育期的传输速率曲线在称为交叉点(CP)的单个点处相交。在这一点上,E/S比达到极值,标志着变速器动力学的关键转变,并与Rt接近1的时间对齐。通过绘制传输速率曲线,β(t),对于任何两个任意的潜伏期,并跟踪它们的交叉点,随着时间的推移,我们可以追踪CP。CP是流行病状态的指标,特别是当Rt接近1时。它提供了一种在不事先了解潜伏期的情况下监测流行病的实用方法。通过一个案例研究,我们估计传播速率和复制次数,识别CP和Rt=1,同时检查S(0)的各种值的E/S比。
    The E/S (exposed/susceptible) ratio is analyzed in the SEIR model. The ratio plays a key role in understanding epidemic dynamics during the 2014-2016 Ebola outbreak in Sierra Leone and Guinea. The maximum value of the ratio occurs immediately before or after the time-dependent reproduction number (Rt) equals 1, depending on the initial susceptible population (S(0)). It is demonstrated that transmission rate curves corresponding to various incubation periods intersect at a single point referred to as the Cross Point (CP). At this point, the E/S ratio reaches an extremum, signifying a critical shift in transmission dynamics and aligning with the time when Rt approaches 1. By plotting transmission rate curves, β(t), for any two arbitrary incubation periods and tracking their intersections, we can trace CP over time. CP serves as an indicator of epidemic status, especially when Rt is close to 1. It provides a practical means of monitoring epidemics without prior knowledge of the incubation period. Through a case study, we estimate the transmission rate and reproduction number, identifying CP and Rt = 1 while examining the E/S ratio across various values of S(0).
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  • 文章类型: Journal Article
    监测系统显示,耐万古霉素屎肠球菌(VREfm)的患病率有所增加。我们的目的是调查中国VREfm的流行病学和基因组特征。
    我们在2018年1月至2023年6月期间从6个省的19家医院的住院患者中收集了20747种非冗余屎肠球菌分离株。VREfm通过抗菌药物敏感性试验证实。使用R中的变化点软件包分析患病率。通过全基因组测序探索基因组特征。
    5.59%(1159/20747)的屎肠球菌分离株对万古霉素耐药。广东省的VREfm患病率从2021年之前的5%上升到2023年的20%-50%(p<0.0001),但不是在其他五个省。2021年之前的两个主要克隆,ST17和ST78,被一个新兴的克隆所取代,ST80,从2021年到2023年(88.63%,195/220)。所有来自广东的ST80VREfm形成一个单一的谱系(SC11),并且在遗传上与来自其他国家的ST80VREfm相距遥远,表明是区域性爆发。SC11中的所有ST80VREfm都带有一种新型的带有vanA盒的质粒,嵌入在IS1678和ISL3两侧的Tn1546结构中。然而,在接合实验中未检测到接合相关基因,也未获得跨接合体,表明ST80VREfm的爆发可能归因于克隆传播。
    我们发现在广东正在爆发带有新的vanA携带质粒的ST80VREfm,中国。在其他省份和国家也发现了这种克隆,预示着很快会有更广泛扩散的风险。需要持续监测以告知公共卫生干预措施。
    BACKGROUND: Surveillance systems revealed that the prevalence of vancomycin-resistant Enterococcus faecium (VREfm) has increased. We aim to investigate the epidemiological and genomic characteristics of VREfm in China.
    METHODS: We collected 20,747 non-redundant E. faecium isolates from inpatients across 19 hospitals in six provinces between January 2018 and June 2023. VREfm was confirmed by antimicrobial susceptibility testing. The prevalence was analyzed using changepoint package in R. Genomic characteristics were explored by whole-genome sequencing.
    RESULTS: 5.59% (1159/20,747) of E. faecium isolates were resistant to vancomycin. The prevalence of VREfm increased in Guangdong province from 5% before 2021 to 20-50% in 2023 (p < 0.0001), but not in the other five provinces. Two predominant clones before 2021, ST17 and ST78, were substituted by an emerging clone, ST80, from 2021 to 2023 (88.63%, 195/220). All ST80 VREfm from Guangdong formed a single lineage (SC11) and were genetically distant from the ST80 VREfm from other countries, suggesting a regional outbreak. All ST80 VREfm in SC11 carried a new type of plasmid harbouring a vanA cassette, which was embedded in a Tn1546-like structure flanked by IS1678 and ISL3. However, no conjugation-related gene was detected and no transconjugant was obtained in conjugation experiment, indicating that the outbreak of ST80 VREfm could be attributed to clonal transmission.
    CONCLUSIONS: We revealed an ongoing outbreak of ST80 VREfm with a new vanA-harbouring plasmid in Guangdong, China. This clone has also been identified in other provinces and countries, foreboding a risk of wider spreading shortly. Continuous surveillance is needed to inform public health interventions.
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  • 文章类型: Journal Article
    惩教中心(此处称为“监狱”)感染COVID-19的风险很高,并在全球范围内爆发了重大疫情。不可避免的密切接触,囚犯经常活动,以及不成比例的合并症负担意味着在对COVID-19等呼吸道病原体的任何公共卫生反应中,都需要优先考虑这些环境。我们为新南威尔士州的监狱系统开发了基于个人的SARS-CoV-2传播模型,澳大利亚——包括所有33个惩教中心,13458名囚犯,578名医疗保健人员和6909名保管人员。根据各种缓解策略评估了潜在的COVID-19疾病暴发,包括入境检疫,隔离案件,工作人员的快速抗原检测,以及免疫接种。没有控制措施,该模型预测,到第35天,整个监狱系统每天将出现472例新感染的峰值,所有囚犯在第120天被感染。最有效的个人缓解策略是高免疫覆盖率,并迅速锁定受感染囚犯的中心,从而将疫情规模减少62-73%。除了免疫,入境时对囚犯的隔离相结合,隔离已证实或疑似病例,工作人员和囚犯广泛使用个人防护设备是最有效的策略。高免疫覆盖率减轻了COVID-19在惩教场所内和之间的传播,但仅靠这一点是不够的。保持隔离和隔离,以及高免疫水平,将允许惩教系统以较低的爆发风险运行。这些结果为澳大利亚惩教系统中呼吸道病原体的公共卫生政策提供了依据。
    Correctional centres (termed here \'prisons\') are at high risk of COVID-19 and have featured major outbreaks worldwide. Inevitable close contacts, frequent inmate movements, and a disproportionate burden of co-morbidities mean these environments need to be prioritised in any public health response to respiratory pathogens such as COVID-19. We developed an individual-based SARS-CoV-2 transmission model for the prison system in New South Wales, Australia - incorporating all 33 correctional centres, 13,458 inmates, 578 healthcare and 6,909 custodial staff. Potential COVID-19 disease outbreaks were assessed under various mitigation strategies, including quarantine on entry, isolation of cases, rapid antigen testing of staff, as well as immunisation.Without control measures, the model projected a peak of 472 new infections daily by day 35 across the prison system, with all inmates infected by day 120. The most effective individual mitigation strategies were high immunisation coverage and prompt lockdown of centres with infected inmates which reduced outbreak size by 62-73%. Other than immunisation, the combination of quarantine of inmates at entry, isolation of proven or suspected cases, and widespread use of personal protective equipment by staff and inmates was the most effective strategy. High immunisation coverage mitigates the spread of COVID-19 within and between correctional settings but is insufficient alone. Maintaining quarantine and isolation, along with high immunisation levels, will allow correctional systems to function with a low risk of outbreaks. These results have informed public health policy for respiratory pathogens in Australian correctional systems.
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