Cell Separation

细胞分离
  • 文章类型: Journal Article
    自体脂肪来源的基质细胞有许多潜在的治疗应用。这些细胞存在于从脂肪组织分离的称为基质血管部分(SVF)的异质群体中。封闭的自动化系统可用于从贴壁基质释放细胞。这里,我们测试一个系统来评估异质输出的产量,纯度,细胞表征,和干性标准。使用BSL公司的自动细胞站(ACS)从三个供体中分离出SVF。Ltd.,釜山,大韩民国。SVF细胞输出被表征为细胞产量和活力,免疫表型分析,多能分化潜能,对塑料的附着力,和菌落形成单位。此外,对SVF进行内毒素和胶原酶残留检测.来自ACS系统的SVF产量是7.9±0.5mL的平均体积,含有平均19×106个有核细胞,具有85±12%的活力。流式细胞术鉴定了多种细胞,包括ASC(23%),巨噬细胞(24%),内皮细胞(5%),周细胞(4%),和过渡细胞(0.5%)。最终的浓缩产物含有能够分化为脂肪的细胞,软骨形成,和成骨表型。此外,对SVF无菌性和纯度的测试显示没有内毒素或胶原酶残留的证据。ACS系统可以在单个外科手术的时间范围内有效地处理来自脂肪组织的细胞。细胞表征表明,该系统可以产生无菌和浓缩的SVF输出,在异质细胞群内提供有价值的ASC来源。
    There are many potential therapeutic applications for autologous adipose-derived stromal cells. These cells are found in a heterogeneous population isolated from adipose tissue called the stromal vascular fraction (SVF). Closed automated systems are available to release cells from the adherent stroma. Here, we test one system to evaluate the heterogeneous output for yield, purity, cellular characterization, and stemness criteria. The SVF was isolated from three donors using the Automated Cell Station (ACS) from BSL Co., Ltd., Busan, Republic of Korea. The SVF cellular output was characterized for cell yield and viability, immunophenotyping analysis, pluripotent differentiation potential, adhesion to plastic, and colony-forming units. Additionally, the SVF was tested for endotoxin and collagenase residuals. The SVF yield from the ACS system was an average volume of 7.9 ± 0.5 mL containing an average of 19 × 106 nucleated cells with 85 ± 12% viability. Flow cytometry identified a variety of cells, including ASCs (23%), macrophages (24%), endothelial cells (5%), pericytes (4%), and transitional cells (0.5%). The final concentrated product contained cells capable of differentiating into adipogenic, chondrogenic, and osteogenic phenotypes. Furthermore, tests for SVF sterility and purity showed no evidence of endotoxin or collagenase residuals. The ACS system can efficiently process cells from adipose tissue within the timeframe of a single surgical procedure. The cellular characterization indicated that this system can yield a sterile and concentrated SVF output, providing a valuable source of ASCs within the heterogeneous cell population.
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  • 文章类型: English Abstract
    UNASSIGNED: To achieve high throughput and high detection rate of circulating tumor cells (CTCs) in human peripheral blood, and to provide efficient and accurate early screening for cancer patients.
    UNASSIGNED: A microfluidic chip with the integration of sorting, enrichment and detection was designed, and CTCs at the single cell level were detected by fluorescence detection system to obtain the number of CTCs in samples.
    UNASSIGNED: The peripheral blood samples after lysed red blood cells were used for 6 experiments. When the injection rate reached 0.2 mL/h, CTCs could reach the best detection rate of 78.6%, and the correlation coefficient within the group was above 0.8.
    UNASSIGNED: CTCs detection system can achieve high detection rate and has good reliability, which can provide a reliable reference for clinical research in related fields.
    UNASSIGNED: 实现人体外周血液中循环肿瘤细胞(circulating tumor cells, CTCs)的高通量、高检出率的分选富集与检测,为癌症患者提供高效、精准的早期筛查。.
    UNASSIGNED: 设计一款分选富集与检测集成化的微流控芯片,采用荧光检测系统进行单细胞水平的CTCs检测,得到样本中的CTCs数量。.
    UNASSIGNED: 使用裂解红细胞后的外周血液样本进行6次实验,在进样速度达到0.2 mL/h时,CTCs能够达到78.6%的最佳检测率,组内相关系数达到0.8以上。.
    UNASSIGNED: CTCs检测系统能够实现较高的检出率并具有良好的可靠性,可以为相关领域的临床研究提供可靠的参考。.
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  • 文章类型: Journal Article
    睾酮,一种重要的性激素,调节性成熟,睾丸发育,男性的精子发生和第二性征的维持。睾丸间质细胞是体内睾酮产生的主要来源。合作猪,原产于甘肃南部,中国,以性成熟早为特征,抗病性强,耐粗饲料。本研究采用IV型胶原酶消化结合细胞筛过滤,从1月龄合作猪的睾丸组织中分离纯化睾丸间质细胞。我们还初步研究了这些细胞的功能。结果表明,分离纯化的Leydig细胞的纯度高达95%。免疫荧光分析表明,分离的细胞特异性表达了3β-羟基类固醇脱氢酶抗体。酶联免疫吸附试验结果显示,体外培养的Leydig细胞(第5-9代)的睾酮分泌在1.29-1.67ng/mL之间。此外,细胞自噬特征蛋白微管相关蛋白1轻链3的含量为230-280pg/mL.通过这项研究,我们建立了一个体外分离系统,1月龄合作猪睾丸间质细胞的纯化和鉴定,为探索合作猪性早熟的分子机制提供参考。
    Testosterone, an important sex hormone, regulates sexual maturation, testicular development, spermatogenesis and the maintenance of secondary sexual characteristics in males. Testicular Leydig cells are the primary source of testosterone production in the body. Hezuo pigs, native to the southern part of Gansu, China, are characterized by early sexual maturity, strong disease resistance and roughage tolerance. This study employed type IV collagenase digestion combined with cell sieve filtration to isolate and purify Leydig cells from the testicular tissue of 1-month-old Hezuo pigs. We also preliminarily investigated the functions of these cells. The results indicated that the purity of the isolated and purified Leydig cells was as high as 95%. Immunofluorescence analysis demonstrated that the isolated cells specifically expressed the 3β-hydroxysteroid dehydrogenase antibody. Enzyme-linked immunosorbent assay results showed that the testosterone secretion of the Leydig cells cultured in vitro (generations 5-9) ranged between 1.29-1.67 ng/mL. Additionally, the content of the cellular autophagy signature protein microtubule-associated protein 1 light chain 3 was measured at 230-280 pg/mL. Through this study, we established an in vitro system for the isolation, purification and characterization of testicular Leydig cells from 1-month-old Hezuo pigs, providing a reference for exploring the molecular mechanism behind precocious puberty in Hezuo pigs.
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  • 文章类型: Journal Article
    结直肠癌(CRC)由推定的结直肠癌干细胞样细胞(CRC-CSC)维持,这些细胞负责CRC的转移和复发。靶向这些CSC可以是CRC的有效治疗。然而,由于缺乏特异性标志物,CRC-CSC的可靠鉴定仍存在争议.假定糖蛋白CD133可以用作鉴定CRC-CSC的有用标记。在这项研究中,我们采用CD133作为标志物来鉴定人类中的CRC-CSC(LoVo,HCT116和SW620)和小鼠(CT26)CRC细胞系。在这些线条中,通过磁激活细胞分选和流式细胞术分离和鉴定CD133+细胞。扩散,菌落形成,体外分析CD133+细胞的耐药性,并在小鼠体内测定它们的致瘤性。扩散,菌落形成能力,耐药性,CD133+细胞的致瘤性高于CD133-细胞。因此,培养的CD133+细胞具有CSCs的特性。因此,糖蛋白CD133是鉴定CRC-CSC的可靠标记。这些结果可用于设计CRC治疗中的新型治疗靶标。
    Colorectal carcinoma (CRC) is maintained by putative colorectal cancer stem-like cells (CRC-CSCs) that are responsible for CRC metastasis and relapse. Targeting these CSCs can be an effective treatment of CRC. However, reliable identification of CRC-CSCs remains controversial due to the absence of specific markers. It is assumed that glycoprotein CD133 can serve as a useful marker for identification of CRC-CSCs. In this study, we employed CD133 as a marker to identify CRC-CSCs in human (LoVo, HCT116, and SW620) and mouse (CT26) CRC cell lines. In these lines, CD133+ cells were isolated and identified by magnetic-activated cell sorting and flow cytometry. Proliferation, colony formation, and drug resistance of CD133+ cells were analyzed in vitro, and their tumorigenicity was determined in vivo on mice. Proliferation, colony-forming ability, drug resistance, and tumorigenicity of CD133+ cells were higher than those of CD133- cells. Thus, cultured CD133+ cells had the characteristics of CSCs. Hence, glycoprotein CD133 is a reliable marker to identify CRC-CSCs. These results can be used for designing a novel therapeutic target in CRC treatment.
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  • 文章类型: Journal Article
    中性粒细胞被认为是先天免疫的主要参与者。在过去的几年里,研究表明,它们与不同的生理状况和疾病有关。然而,由于培养中中性粒细胞的分离和维持存在困难,中性粒细胞生物学领域的进展相对缓慢。在这里,我们比较了基于密度梯度和免疫磁性方法的四种方案,用于从骨髓和脾脏中分离鼠中性粒细胞。使用Ficoll1.077/1.119g/mL密度梯度进行中性粒细胞分离,Ficoll1.083/1.090/1.110μg/mL密度梯度和免疫磁珠法的阴性和阳性选择。在样品纯度方面比较了不同的方案,细胞活力,产量,和成本。通过NETosis分析和中性粒细胞氧化爆发测试检查分离的中性粒细胞的功能。获得的数据显示,给定的纯度/产量/活力/成本比,基于Ficoll1.077/1.119g/mL密度梯度的细胞离心的方案被推荐用于从骨髓中分离嗜中性粒细胞。而使用Dynabeads阳性选择的免疫磁性方法被推荐用于脾中性粒细胞的分离。
    Neutrophils are considered as the main player in innate immunity. In the last few years, it has been shown that they are involved in different physiological conditions and diseases. However, progress in the field of neutrophil biology is relatively slow due to existing difficulties in neutrophil isolation and maintenance in culture. Here we compare four protocols based on density-gradient and immunomagnetic methods for isolation of murine neutrophils from bone marrow and spleen. Neutrophil isolation was performed using Ficoll 1.077/1.119 g/mL density gradient, Ficoll 1.083/1.090/1.110 g/mL density gradient and immunomagnetic method of negative and positive selection. The different protocols were compared with respect to sample purity, cell viability, yield, and cost. The functionality of isolated neutrophils was checked by NETosis analysis and neutrophil oxidative burst test. Obtained data revealed that given purity/yield/viability/cost ratio the protocol based on cell centrifugation on Ficoll 1.077/1.119 g/mL density gradient is recommended for isolation of neutrophils from bone marrow, whereas immunomagnetic method of positive selection using Dynabeads is recommended for isolation of splenic neutrophils.
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  • 文章类型: Journal Article
    循环肿瘤细胞(CTC)的分离和检测对于癌症的早期诊断和治疗策略的评估具有重要意义。然而,外周血细胞中CTC的缺乏对其检测提出了重大挑战.此外,CTC和白细胞(WBC)之间的相似尺寸范围使得常规微流体平台不足以分离CTC。为了克服这些挑战,在这项研究中,一种新型的尺寸无关的惯性介电泳微流体通道,已经提出了CTC与WBC的单级分离。所提出的装置利用嵌入有交叉指形电极的螺旋微通道。建立并验证了数值模型,以研究与通道设计相关的各种参数的影响,流体流动,和电极配置。发现CTC的最佳分离可以在相对较低的电压下获得,称为临界电压。此外,在7.5V的临界电压下,混合微通道被证明能够从不同的WBC亚型(包括粒细胞)中分离CTC,单核细胞,T-,和B淋巴细胞。混合螺旋微通道的独特能力允许从WBC的混合物中进行这种尺寸无关的CTC分离。总的来说,所提出的技术可以容易地用于癌细胞的连续和高通量分离。
    Isolation and detection of circulating tumor cells (CTCs) hold significant importance for the early diagnosis of cancer and the assessment of therapeutic strategies. However, the scarcity of CTCs among peripheral blood cells presents a major challenge to their detection. Additionally, a similar size range between CTCs and white blood cells (WBCs) makes conventional microfluidic platforms inadequate for the isolation of CTCs. To overcome these challenges, in this study, a novel inertial-dielectrophoretic microfluidic channel for size-independent, single-stage separation of CTCs from WBCs has been presented. The proposed device utilizes a spiral microchannel embedded with interdigitated electrodes. A numerical model is developed and validated to investigate the influence of various parameters related to the channel design, fluid flow, and electrode configuration. It was found that optimal separation of CTCs could be obtained at a relatively low voltage, termed the critical voltage. Furthermore, at the critical voltage of 7.5 V, the hybrid microchannel is demonstrated to be capable of separating CTCs from different WBC subtypes including granulocytes, monocytes, T-, and B-lymphocytes. The unique capabilities of the hybrid spiral microchannel allow for this size-independent isolation of CTCs from a mixture of WBCs. Overall, the proposed technique can be readily utilized for continuous and high-throughput separation of cancer cells.
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  • 文章类型: Journal Article
    癌症诊断最近一直处于医学研究的前沿,正在努力开发用于检测患者癌症的设备和技术。用于癌症诊断的一种有前景的方法是检测血液样品中的循环肿瘤细胞(CTC)。从不同背景的血细胞中分离出这些稀有细胞并对其进行分析可以为疾病的阶段和致死性提供有价值的见解。在这里,我们介绍了在聚合物圆盘上利用离心力进行细胞分离的离心微流体平台的设计和制造。分离单元利用主动和被动两种方法。换句话说,除了为通道引入新颖的几何形状外,外部磁场也用于将靶细胞与背景细胞分离。为了使外部字段发挥作用,必须首先用抗体缀合的纳米颗粒标记CTC;然后应进行分离过程。在实验测试之前,进行了数值研究以确定最佳参数;角速度和磁化强度研究表明,2000rpm和868,000(kA/m)是所设计设备达到白细胞(WBC)和CTC效率100%的最佳条件。这些结果表明,通道的被动区域主要有助于靶细胞的聚焦,并表明,与之字形几何相比,在膨胀-收缩几何中的聚焦效应更为明显。此外,结果证明,在分离效率方面,弯曲通道的几何形状比直线通道的几何形状表现更好。然而,如果分离仅依赖于通道几何形状,大多数细胞将被引导到非目标腔室,导致次优结果。这是由于作用在细胞上的力的方向。然而,包括外部磁场改善了净力的方向并提高了分离效率。最后,对研究的数值和实验结果进行了比较,引入弯曲的膨胀-收缩通道作为具有100%和92%CTC分离效率的最佳几何形状,分别。
    Cancer diagnosis has recently been at the forefront of recent medical research, with ongoing efforts to develop devices and technologies for detecting cancer in patients. One promising approach for cancer diagnosis is the detection of Circulating Tumor Cells (CTCs) in blood samples. Separating these rare cells from the diverse background of blood cells and analyzing them can provide valuable insights into the disease\'s stage and lethality. Here we present the design and fabrication of a centrifugal microfluidic platform on a polymeric disk that utilizes centrifugal forces for cell isolation. The separation units exploit both active and passive methods. In other words, in addition to introducing novel geometry for channels, an external magnetic field is also employed to separate the target cells from the background cells. In order for the external field to function, the CTCs must first be labeled with antibody-conjugated nanoparticles; the separation process should be then performed. Before the experimental tests, a numerical study was done to determine the optimum parameters; the angular velocity and magnetization investigations showed that 2000 rpm and 868,000 (kA/m) are the optimum conditions for the designed device to reach the efficiency of 100% for both White Blood Cells (WBCs) and CTCs. These results indicate that the passive region of the channels primarily contributes to the focusing of the target cells, and showed that the focusing effect is more pronounced in the expansion-contraction geometry compared to the zigzag geometry. Additionally, the results proved that curved channel geometries performed better than straight ones in terms of separation efficiency. However, if the separation relies solely on channel geometry, the majority of cells would be directed towards the non-target chamber, leading to suboptimal results. This is due to the direction of the forces acting on the cells. However, including an external magnetic field improves the direction of the net force and enhances the separation efficiency. Finally, the numerical and experimental results of the study were compared, and the curved expansion-contraction channel is introduced as the best geometry having 100% and ∼92% CTC separation efficiency, respectively.
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  • 文章类型: Multicenter Study
    肿瘤教育的血小板(TEP)已被广泛报道具有有希望的应用潜力;尽管如此,在基于血小板的液体活检的TEP研究中,从外周血中分离血小板是一个重要但被忽视的步骤.在这篇文章中,我们讨论了血小板分离的一些常见影响因素。探讨血小板分离的相关因素,我们对健康的中国汉族成年人(18~79岁)进行了一项前瞻性多中心研究.从四家医院前瞻性招募的226名健康志愿者中,共有208名个体被纳入最终统计分析。主要研究指标是血小板恢复率(PRR)。在四家医院也观察到了类似的模式,室温(23°C±2°C)下的PRR略高于低温(4°C±2°C)下的PRR。此外,随着贮藏时间的增加,PRR逐渐降低。储存2小时内的样品的PRR显著高于超过2小时的样品(p<.05)。此外,PRR也受到不同中心使用的设备的影响。这项研究证实了影响血小板分离的几个因素。在我们的研究中,我们指出,血小板分离应在外周血抽取后两小时内进行,并保持在室温下直至分离,在提取过程中应该固定离心机模型,这将进一步改善基于血小板的液体活检在癌症中的研究进展。
    背景是什么?全球范围内,癌症是导致过早死亡的主要原因之一。早期筛查对癌症诊断和治疗非常重要,甚至可以显著降低全球癌症死亡率。癌症是导致过早死亡的主要原因之一。早期筛查对于癌症诊断和治疗很重要,甚至可以显着降低癌症死亡率。对于液体活检,隔离是重要的一步。早期的研究已经探索了外泌体的影响因素,循环肿瘤细胞(CTC),和液体活检中的其他成分提取。尽管血小板也是液体活检的极好来源,很少有研究探讨影响血小板分离的因素。考虑到血小板分离在肿瘤血小板液体活检中的重要性,我们的目标是尽可能优化血小板分离条件,以获得较高的血小板回收率。什么是新的?在这项研究中,我们对来自四个中心的健康成年人进行了前瞻性多中心研究,联合全血和富血小板血浆,探讨血小板分离过程中影响血小板恢复率(PRR)的因素。在我们的研究中,我们指出,血小板分离应在室温下两小时内进行,在提取过程中应该固定离心机模型,这将进一步改善基于血小板的液体活检在癌症中的研究进展。有什么影响?在未来的血小板相关研究中,我们应该固定样品储存温度,血小板提取过程中的储存时间和离心模型,从而尽可能减少影响血小板提取的变量,保证血小板提取的稳定回收率。
    Tumor-educated platelets (TEPs) have been widely reported to have promising application potential; nonetheless, platelet isolation from peripheral blood is an important but neglected step in TEPs research for platelet-based liquid biopsy. In this article, we discussed some common influence factors for platelet isolation. To investigate the factors involved in platelet isolation, a prospective multicenter study was conducted on healthy Han Chinese adults (18 to 79 years of age). A total of 208 individuals were included in the final statistical analysis out of the 226 healthy volunteers who were prospectively enrolled from four hospitals. The primary study metric was the platelet recovery rate (PRR). The similar pattern was observed in the four hospitals, The PRR at room temperature (23°C±2°C) was slightly higher than the PRR at cold temperature (4°C±2°C). Moreover, the PRR gradually decreased as the storage time increased. The PRR for samples within 2 hours of storage is significantly higher than for samples beyond 2 hours (p < .05). Additionally, PRR was also affected by the equipment used in different centers. This study confirmed several factors that influence platelet isolation. In our study, we indicated that platelet isolation should be performed within two hours of peripheral blood draw and held at room temperature until isolation, and that centrifuge models should be fixed during the extraction process, which will further improve the research progress of platelet-based liquid biopsy in cancer.
    What is the context? Globally, cancer is one of the leading cause of premature death. Early screening is important for cancer diagnosis and treatment and can even significantly lower cancer mortalityGlobally, cancer is one of the leading cause of premature death. Early screening is important for cancer diagnosis and treatment and can even significantly lower cancer mortalityFor the liquid biopsy, isolation is an important step. Early studies have explored the influencing factors of exosome, circulating tumor cells (CTCs), and other components extraction in liquid biopsy.Despite platelet also being an excellent source of liquid biopsy, few studies have explored the factors that influence platelet isolation.Considering the importance of platelet isolation in tumor-based platelet liquid biopsy, our aim is to optimize platelet isolation conditions as much as possible to obtain a high platelet recovery rate.What is new? In this study, we conducted a prospective multicenter study ofhealthy adults from four centers, combining whole blood with platelet-richplasma to investigate factors influencing platelet recovery rate (PRR) during platelet isolation.In our study, we indicated that platelet isolation should be performed within two hours at room temperature, and that centrifuge models should be fixed during the extraction process, which will further improve the research progress of platelet-based liquid biopsy in cancer.What is the impact? In future platelet-related studies, we should fix the sample storage temperature, storage time and centrifuge model in the process of platelet extraction, so as to reduce the variables affecting platelet extraction as much as possible and ensure the stable recovery rate of platelet extraction.
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  • 文章类型: Journal Article
    许多慢性疾病的预后需要识别循环肿瘤细胞(CTC),之后,需要分离和恢复受污染的样品。传统的血细胞分离方法,即细胞计数或磁激活细胞分选,在许多情况下失去了它们的功能,或不同条件下的效率。因此,已经实施了分离的微流体方法。在这里,设计并优化了创新的集成双阶梯微通道,能够\'分离\',和“化学裂解”同时可以控制裂解试剂浓度以调节裂解强度。基于绝缘体的介电泳(iDEP)方法,这是这个装置的主要物理原理,利用产生最大的分离。施加电压的关键特征,电压差,楼梯的角度和数量,并且已经对微通道中的喉部的宽度进行了数值探索,以在分离和裂解缓冲液浓度方面优化通道。电压差(ΔV)为10的最佳情况的总体状态具有以下特征:楼梯的数量为2,楼梯的角度为110°,喉部的宽度为140μm,和入口电压为30V和40V。Delta最优情况的总体状态具有以下特征:楼梯数量为2,楼梯角度为110°,喉部的宽度为140μm,入口电压为30V和35V。
    Prognostication of numerous chronic diseases are in need of identifying circulating tumor cells (CTCs), afterwards, separating and reviving contaminated samples are required. Conventional methods of separating blood cells, namely cytometry or magnetically activated cell sorting, in many cases lose their functionality, or efficiency under different conditions. Hence microfluidic methods of separation have been implemented. Herein, an innovative integrated double stair-shaped microchannel is designed and optimized, capable of \'separation\', and \'chemical lysis\' simultaneously in which the lysis reagent concentration can be controlled to tune the lysis intensity. The method of insulator-based dielectrophoresis (iDEP), which is the main physics in this device, is utilized yielding maximum separation. Pivotal features of the applied voltage, the voltage difference, the angles and the number of stairs, and the width of the throat in the microchannel have been numerically explored in order to optimize the channel in terms of separation and the lysis buffer concentration. The overall state of optimum case for the voltage difference (ΔV) of 10 owns the following features: the number of stairs is 2, the angle of stairs is 110°, the width of throat is 140 μm, and the inlet voltages are 30 V and 40 V. Also, the overall state of optimum cases for delta possess the following features: the number of stairs is 2, the angle of stairs is 110°, the width of throat is 140 μm, and the inlet voltages are 30 V and 35 V.
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  • 文章类型: Multicenter Study
    结节病中缓解过程与进展过程中发生的各种CD4T细胞谱系的贡献和调节知之甚少。我们开发了一个多参数流式细胞术小组来对这些CD4+T细胞谱系进行分类,然后使用RNA测序分析以六个月的间隔在多个研究地点测量它们的功能潜力。为了获得高质量的RNA进行测序,我们依靠趋化因子受体的表达来鉴定和分类谱系.为了最小化由T细胞扰动引起的基因表达变化,并避免由冷冻/解冻循环引起的蛋白质变性,我们在每个研究地点使用新鲜分离的样本优化了方案.为了完成这项研究,我们必须克服跨多个站点的重大标准化挑战.这里,我们详细介绍了细胞处理的标准化注意事项,流染色,数据采集,排序参数,以及作为NIH赞助的一部分进行的RNA质量控制分析,多中心研究,结节病初始诊断时的结节病内镜靶向纵向终点(BRITE)。经过几轮迭代优化,我们确定了以下方面对于成功标准化至关重要:1)使用CS&T/彩虹珠技术使各个站点之间的PMT电压对齐;2)在细胞仪程序中创建的单个模板,所有站点在数据采集和细胞分选过程中都使用该模板来检查细胞群;3)使用标准化的冻干流式细胞仪染色混合物以减少处理过程中的技术错误;4)开发和实施标准化的操作手册。细胞分选标准化后,通过分析分选的T细胞群的RNA质量和数量,我们能够确定下一代测序所需的最小分选细胞数.总的来说,我们发现,在多个研究地点实施RNA-seq分析的多参数细胞分选临床研究需要迭代测试的标准化程序,以确保具有可比性和高质量的结果.
    The contribution and regulation of various CD4+ T cell lineages that occur with remitting vs progressive courses in sarcoidosis are poorly understood. We developed a multiparameter flow cytometry panel to sort these CD4+ T cell lineages followed by measurement of their functional potential using RNA-sequencing analysis at six-month intervals across multiple study sites. To obtain good quality RNA for sequencing, we relied on chemokine receptor expression to identify and sort lineages. To minimize gene expression changes induced by perturbations of T cells and avoid protein denaturation caused by freeze/thaw cycles, we optimized our protocols using freshly isolated samples at each study site. To accomplish this study, we had to overcome significant standardization challenges across multiple sites. Here, we detail standardization considerations for cell processing, flow staining, data acquisition, sorting parameters, and RNA quality control analysis that were performed as part of the NIH-sponsored, multi-center study, BRonchoscopy at Initial sarcoidosis diagnosis Targeting longitudinal Endpoints (BRITE). After several rounds of iterative optimization, we identified the following aspects as critical for successful standardization: 1) alignment of PMT voltages across sites using CS&T/rainbow bead technology; 2) a single template created in the cytometer program that was used by all sites to gate cell populations during data acquisition and cell sorting; 3) use of standardized lyophilized flow cytometry staining cocktails to reduce technical error during processing; 4) development and implementation of a standardized Manual of Procedures. After standardization of cell sorting, we were able to determine the minimum number of sorted cells necessary for next generation sequencing through analysis of RNA quality and quantity from sorted T cell populations. Overall, we found that implementing a multi-parameter cell sorting with RNA-seq analysis clinical study across multiple study sites requires iteratively tested standardized procedures to ensure comparable and high-quality results.
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