Artificial neural networks

人工神经网络
  • 文章类型: Journal Article
    在17个生物目标中,建立了化合物的抗焦虑活性对其对接能量的依赖性的分类共识集成多目标神经网络模型。训练集包括已经测试过抗焦虑活性的化合物,其结构与所研究的15种含氮杂环化学型相似。选择了与抗焦虑活性相关的17个生物目标,考虑到这些化学型衍生物对它们的可能影响。生成的模型由三个人工神经网络集合组成,用于预测三种水平的抗焦虑活性,每个集成有七个神经网络。对一组神经网络中的神经元进行灵敏的分析,以获得高水平的活动,从而有可能识别出四个生物目标ADRA1B,ADRA2A,AGTR1和NMDA-Glut,这对抗焦虑作用的表现最为显著。对于2,3,4,5-四氢-11H-[1,3]二氮杂[1,2-a]苯并咪唑和[1,2,4]三唑并[3,4-a][2,3]苯并二氮杂衍生物的四个关键生物目标,建立了八个具有高抗焦虑活性的单目标药效团。单目标药效团的叠加建立了两个具有高抗焦虑活性的多目标药效团,反映了相互作用的普遍特征2,3,4,5-四氢-11H-[1,3]二氮杂二[1,2-a]苯并咪唑和[1,2,4]三唑并[3,4-a][2,3]苯二氮卓衍生物与最重要的生物目标ADRA1B,ADRA2A,AGTR1和NMDA-Glut。
    A classification consensus ensemble multitarget neural network model of the dependence of the anxiolytic activity of chemical compounds on the energy of their docking in 17 biotargets was developed. The training set included compounds thathadalready been tested for anxiolytic activity and were structurally similar to the 15 studied nitrogen-containing heterocyclic chemotypes. Seventeen biotargets relevant to anxiolytic activity were selected, taking into account the possible effect on them of the derivatives of these chemotypes. The generated model consistedof three ensembles of artificial neural networks for predicting three levels of anxiolytic activity, with sevenneural networks in each ensemble. A sensitive analysis of neurons in an ensemble of neural networks for a high level of activity made it possible to identify four biotargets ADRA1B, ADRA2A, AGTR1, and NMDA-Glut, which were the most significant for the manifestation of the anxiolytic effect. For these four key biotargets for 2,3,4,5-tetrahydro-11H-[1,3]diazepino[1,2-a]benzimidazole and [1,2,4]triazolo[3,4-a][2,3]benzodiazepine derivatives, eight monotarget pharmacophores of high anxiolytic activity were built. Superposition of monotarget pharmacophores built two multitarget pharmacophores of high anxiolytic activity, reflecting the universal features of interaction 2,3,4,5-tetrahydro-11H-[1,3]diazepino[1,2-a]benzimidazole and [1,2,4]triazolo[3,4-a][2,3]benzodiazepine derivatives with the most significant biotargets ADRA1B, ADRA2A, AGTR1, and NMDA-Glut.
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  • 文章类型: Journal Article
    通过RAGE-NF-κB信号通路的RAGE信号转导是引起糖尿病严重并发症的炎症反应机制之一。RAGE抑制剂是有前途的药理学化合物,需要开发新的预测模型。基于人工神经网络的方法论,构建了共识集成神经网络多目标模型。该模型描述了RAGE抑制活性水平对化合物对RAGE-NF-κB信号途径的34种靶蛋白的亲和力的依赖性。为此,在先前创建的相关生物目标的三维模型数据库的基础上,创建了RAGE-NF-κB信号链的靶蛋白的有效三维模型的扩展数据库。将已知的RAGE抑制剂从经过验证的数据库集成分子对接到目标蛋白的添加模型的位点。并确定了每种化合物相对于每个靶标的最小对接能。形成了用于神经网络建模的扩展训练集。通过人工多层感知器神经网络的方法使用七个采样变体,基于计算的化合物对RAGE-NF-κB信号通路的重要靶蛋白的亲和力,构建了三个分类决策规则集合来预测RAGE抑制活性的三个水平。使用第二层的简单共识,评估了所创建模型的预测能力,并显示出高准确性和统计学意义。所得的共识集成神经网络多目标模型已用于虚拟筛选不同化学类别的新衍生物。最有前途的物质已被合成并送去实验研究。
    PeredachaaktivatsiiretseptorovRAGEposignal\'nomuputiRAGE-NF-κBvyzyvaiushchikhtiazhelyeoslozhneniiaprisakharnomdiabete.IngiboryRAGEiavliaiutsiaperspektivnymifarmakologicheskimisoedineniiami,chtotrebuetrazrabotkinovykhpredskazatel\'nykhmodeles.NaosnovemetodologiiiskusstvennykhneronnykhseteeoroenakonsensusnaiaansambllevaianeRosetevaiamul\'titargetnaiamodel\',34belkam-misheniamsignal\'nogoputiRAGE-NF-κB.DliaétogoVypolnenansambllevyàmolekuliarnydokingizvestnykhRAGE-ingibitorovizverifitsirovannobazydannykhvsatymodelebelkov-mishene,选择最小的Sispol\'zovaniem半variantovobucheniianaosnoveiskusstvennykhpokazanaeevysokaiatochnost\'istatisticeskaiaznachimost\'。Spomoshch\'iupoluchennoekonsensusnosholansamblevoRosetevomodeli\'tietnomodeliprovedenvirtual\'nybyskriningtargykhsoedinenenirazlichnykhkhimicheskhklassov.Perspektivnyeveshchestvasintezirovanyinapravlenynaéksperimental\'noeizuchenie.
    RAGE signal transduction via the RAGE-NF-κB signaling pathway is one of the mechanisms of inflammatory reactions that cause severe complications in diabetes mellitus. RAGE inhibitors are promising pharmacological compounds that require the development of new predictive models. Based on the methodology of artificial neural networks, consensus ensemble neural network multitarget model has been constructed. This model describes the dependence of the level of the RAGE inhibitory activity on the affinity of compounds for 34 target proteins of the RAGE-NF-κB signal pathway. For this purpose an expanded database of valid three-dimensional models of target proteins of the RAGE-NF-κB signal chain was created on the basis of a previously created database of three-dimensional models of relevant biotargets. Ensemble molecular docking of known RAGE inhibitors from a verified database into the sites of added models of target proteins was performed, and the minimum docking energies for each compound in relation to each target were determined. An extended training set for neural network modeling was formed. Using seven variants of sampling by the method of artificial multilayer perceptron neural networks, three ensembles of classification decision rules were constructed to predict three level of the RAGE-inhibitory activity based on the calculated affinity of compounds for significant target proteins of the RAGE-NF-κB signaling pathway. Using a simple consensus of the second level, the predictive ability of the created model was assessed and its high accuracy and statistical significance were shown. The resultant consensus ensemble neural network multitarget model has been used for virtual screening of new derivatives of different chemical classes. The most promising substances have been synthesized and sent for experimental studies.
    Peredacha aktivatsii retseptorov RAGE po signal\'nomu puti RAGE-NF-κB iavliaetsia odnim iz mekhanizmov vozniknoveniia vospalitel\'nykh reaktsiĭ, vyzyvaiushchikh tiazhelye oslozhneniia pri sakharnom diabete. Ingibitory RAGE iavliaiutsia perspektivnymi farmakologicheskimi soedineniiami, chto trebuet razrabotki novykh predskazatel\'nykh modeleĭ. Na osnove metodologii iskusstvennykh neĭronnykh seteĭ postroena konsensusnaia ansamblevaia neĭrosetevaia mul\'titargetnaia model\', opisyvaiushchaia zavisimost\' urovnia RAGE-ingibiruiushcheĭ aktivnosti ot affinnosti soedineniĭ k 34 belkam-misheniam signal\'nogo puti RAGE-NF-κB. Dlia étogo na osnove ranee sozdannoĭ bazy dannykh po trekhmernym modeliam relevantnykh biomisheneĭ byla sformirovana rasshirennaia baza dannykh po validnym trekhmernym modeliam belkov-misheneĭ signal\'noĭ tsepochki RAGE-NF-κB. Vypolnen ansamblevyĭ molekuliarnyĭ doking izvestnykh RAGE-ingibitorov iz verifitsirovannoĭ bazy dannykh v saĭty modeleĭ belkov-misheneĭ, opredeleny minimal\'nye énergii dokinga dlia kazhdogo soedineniia v otnoshenii kazhdoĭ misheni i sformirovana rasshirennaia obuchaiushchaia vyborka dlia neĭrosetevogo modelirovaniia. S ispol\'zovaniem semi variantov obucheniia na osnove iskusstvennykh mnogosloĭnykh pertseptronnykh neĭronnykh seteĭ postroeny tri ansamblia klassifikatsionnykh reshaiushchikh pravil dlia prognoza trekh urovneĭ RAGE-ingibiruiushcheĭ aktivnosti po raschetnoĭ affinnosti soedineniĭ k znachimym belkam-misheniam signal\'nogo puti RAGE-NF-κB. S primeneniem prostogo konsensusa vtorogo urovnia vypolnena otsenka prognosticheskoĭ sposobnosti sozdannoĭ modeli, pokazana ee vysokaia tochnost\' i statisticheskaia znachimost\'. S pomoshch\'iu poluchennoĭ konsensusnoĭ ansamblevoĭ neĭrosetevoĭ mul\'titargetnoĭ modeli proveden virtual\'nyĭ skrining novykh soedineniĭ razlichnykh khimicheskikh klassov. Perspektivnye veshchestva sintezirovany i napravleny na éksperimental\'noe izuchenie.
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  • 文章类型: Journal Article
    The present paper deals with prediction of cytotoxic activity of 17-picolyl and 17-picolinylidene androstane derivatives toward androgen receptor negative prostate cancer cell line (PC-3). The prediction was achieved applying artificial neural networks (ANNs) method on the basis of molecular descriptors. The most important descriptors (skin permeability (SP), Madin-Darby canine kidney cell permeability (MDCK) and universal salt solubility factor (S+SF)) were selected by using stepwise selection coupled with partial least squares method. The ANN modelling was carried out in order to obtain reliable models which can facilitate further synthesis of androstane derivatives with high antiproliferative activity toward PC-3 cell line. The modelling procedure resulted in three ANN models with the best statistical performance. The obtained results show that the established ANN models can be applied for required purpose.
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