Antibiotic resistance

抗生素耐药性
  • 文章类型: Journal Article
    Background. Pseudomonas aeruginosa is an invasive organism that frequently causes severe tissue damage in diabetic foot ulcers.Gap statement. The characterisation of P. aeruginosa strains isolated from diabetic foot infections has not been carried out in Tunisia.Purpose. The aim was to determine the prevalence of P. aeruginosa isolated from patients with diabetic foot infections (DFIs) in Tunisia and to characterize their resistance, virulence and molecular typing.Methods. Patients with DFIs admitted to the diabetes department of the International Hospital Centre of Tunisia, from September 2019 to April 2021, were included in this prospective study. P. aeruginosa were obtained from the wound swabs, aspiration and soft tissue biopsies during routine clinical care and were confirmed by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Antimicrobial susceptibility testing, serotyping, integron and OprD characterization, virulence, biofilm production, pigment quantification, elastase activity and molecular typing were analysed in all recovered P. aeruginosa isolates by phenotypic tests, specific PCRs, sequencing, pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing.Results. Sixteen P. aeruginosa isolates (16.3 %) were recovered from 98 samples of 78 diabetic patients and were classified into 6 serotypes (O:11 the most frequent), 11 different PFGE patterns and 10 sequence types (three of them new ones). The high-risk clone ST235 was found in two isolates. The highest resistance percentages were observed to netilmicin (69 %) and cefepime (43.8 %). Four multidrug-resistant (MDR) isolates (25 %) were detected, three of them being carbapenem-resistant. The ST235-MDR strain harboured the In51 class 1 integron (intI1 +aadA6+orfD+qacED1-sul1). According to the detection of 14 genes involved in virulence or quorum sensing, 5 virulotypes were observed, including 5 exoU-positive, 9 exoS-positive and 2 exoU/exoS-positive strains. The lasR gene was truncated by ISPpu21 insertion sequence in one isolate, and a deletion of 64 bp in the rhlR gene was detected in the ST235-MDR strain. Low biofilm, pyoverdine and elastase production were detected in all P. aeruginosa; however, the lasR-truncated strain showed a chronic infection phenotype characterized by loss of serotype-specific antigenicity, high production of phenazines and high biofilm formation.Conclusions. Our study demonstrated for the first time the prevalence and the molecular characterization of P. aeruginosa strains from DFIs in Tunisia, showing a high genetic diversity, moderate antimicrobial resistance, but a high number of virulence-related traits, highlighting their pathological importance.
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  • 文章类型: Journal Article
    We studied antimicrobial activity of epigallocatechin-3-gallate (EGCG), a green tea polyphenolic catechin, and its combined use with ceftazidime (CAZ) against bacterial strains of Klebsiella pneumoniae. EGCG exhibited no activity against strains of K. pneumoniae with a different sensitivity to CAZ. However, for a \"sensitive\" strain, a decrease in minimum inhibitory concentration (MIC) of CAZ (from 0.064 to 0.023 mg/liter) was revealed when CAZ was co-administered with EGCG. For a \"resistant\" stain, MIC of CAZ remained high, but activation of EGCG at its high concentrations was observed. Indirect evidence of antimicrobial effect of EGCG co-administered with CAZ on Klebsiella was obtained.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    Enterococci are robust Gram-positive bacteria that pose a significant threat in healthcare settings due to antibiotic resistance, with vancomycin-resistant enterococci (VRE) most prominent. To tackle this issue, bacteriophages (bacterial viruses) can be exploited as they specifically and efficiently target bacteria. Here, we successfully isolated and characterised a set of novel phages: SHEF10, SHEF11, SHEF13, SHEF14, and SHEF16 which target E. faecalis (SHEF10,11,13), or E. faecium (SHEF13, SHEF14 & SHEF16) strains including a range of clinical and VRE isolates. Genomic analysis shows that all phages are strictly lytic and diverse in terms of genome size and content, quickly and effectively lysing strains at different multiplicity of infections. Detailed analysis of the broad host-range SHEF13 phage revealed the crucial role of the enterococcal polysaccharide antigen (EPA) variable region in its infection of E. faecalis V583. In parallel, the discovery of a carbohydrate-targeting domain (CBM22) found conserved within the three phage genomes indicates a role in cell surface interactions that may be important in phage-bacterial interactons. These findings advance our comprehension of phage-host interactions and pave the way for targeted therapeutic strategies against antibiotic-resistant enterococcal infections.
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  • 文章类型: Journal Article
    Antibiotic resistance is a pressing health issue, with the emergence of resistance in bacteria outcompeting the discovery of novel drug candidates. While many studies have used Adaptive Laboratory Evolution (ALE) to understand the determinants of resistance, the influence of the drug dosing profile on the evolutionary trajectory remains understudied. In this study, we employed ALE on Mycobacterium smegmatis exposed to various concentrations of Norfloxacin using both cyclic constant and stepwise increasing drug dosages to examine their impact on the resistance mechanisms selected. Mutations in an efflux pump regulator, LfrR, were found in all of the evolved populations irrespective of the drug profile and population bottleneck, indicating a conserved efflux-based resistance mechanism. This mutation appeared early in the evolutionary trajectory, providing low-level resistance when present alone, with a further increase in resistance resulting from successive accumulation of other mutations. Notably, drug target mutations, similar to those observed in clinical isolates, were only seen above a threshold of greater than 4× the minimum inhibitory concentration (MIC). A combination of three mutations in the genes, lfrR, MSMEG_1959, and MSMEG_5045, was conserved across multiple lineages, leading to high-level resistance and preceding the appearance of drug target mutations. Interestingly, in populations evolved from parental strains lacking the lfrA efflux pump, the primary target of the lfrR regulator, no lfrR gene mutations are selected. Furthermore, evolutional trajectories originating from the ΔlfrA strain displayed early arrest in some lineages and the absence of target gene mutations in those that evolved, albeit delayed. Thus, blocking or inhibiting the expression of efflux pumps can arrest or delay the fixation of drug target mutations, potentially limiting the maximum attainable resistance levels.
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  • 文章类型: Journal Article
    背景:牙医,通过不适当的抗生素处方,可能导致抗生素耐药性(AR)的全球性问题。
    目的:了解牙医抗生素处方模式,知识来源,和他们的处方实践背后的驱动力可能是至关重要的有效实施合理使用抗生素(RUA)在牙科。
    方法:土耳其牙科协会的活跃成员应邀参加了一项电子调查,其中包括有关其角色的问题。关于RUA的知识和看法,在日常牙科工作中适应RUA的感知障碍,和实际的抗生素处方实践。年龄的潜在影响,性别,专业经验,并对牙科实践模式进行了评价。还评估了牙医对牙周病/状况的处方实践。
    结果:基于1,005个有效响应,对RUA的必要性达成了共识(99.1%);然而,它的执行率很低。主要障碍是牙医自身的安全问题(74.4%),强烈的患者需求(42.2%)和处方抗生素成为一种职业习惯(35.8%)。不同的教育背景导致日常处方实践的明显差异。
    结论:RUA的实施并不充分,感知的障碍对日常处方习惯有影响。通过有效传播循证临床指南和决策辅助工具来支持牙科专业人员可能需要专业组织的额外帮助,以积极对抗AR。
    BACKGROUND: Dentists, through inappropriate antibiotic prescription, may contribute to the global problem of antibiotic resistance (AR).
    OBJECTIVE: Understanding dentists\' antibiotic prescription patterns, source of knowledge, and the driving forces behind their prescription practices may be crucial for the effective implementation of the rational use of antibiotics (RUA) in dentistry.
    METHODS: Active members of the Turkish Dental Association were invited to participate in an electronic survey comprising questions focusing on their role, knowledge and perceptions regarding RUA, the perceived barriers to adapting RUA in daily dental work, and the actual antibiotic prescription practices. The potential impact of age, gender, professional experience, and the mode of dental practice was also evaluated. Dentists\' prescription practices for periodontal disease/conditions were evaluated as well.
    RESULTS: Based on 1,005 valid responses, there was consensus on the necessity of RUA (99.1%); however, its implementation was low. The main barriers were dentists\' own safety concerns (74.4%), strong patients\' demands (42.2%) and the fact that prescribing antibiotics became a professional habit (35.8%). Different educational background resulted in clear variances in everyday prescription practices.
    CONCLUSIONS: The implementation of RUA was not sufficient and the perceived barriers had an impact on daily prescribing habits. Support for dental professionals through the efficient dissemination of evidencebased clinical guidelines and decision-making aids is likely to require additional help from professional organizations in order to actively combat AR.
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  • 文章类型: Journal Article
    医疗保健相关感染(HCAI)构成了重大挑战,影响患者安全和治疗效果。这项回顾性研究调查了ICU心脏手术患者术前住院时间与HCAI之间的相关性。
    分析了35例ICU心脏手术后死亡患者的病历,关注术前住院时间。
    术前停留时间延长(r=0.993)与HCAI升高密切相关,表明了一个关键的风险因素。
    术前住院时间对HCAI风险至关重要。需要前瞻性多中心研究进行验证,这对于提高患者安全性和治疗效果至关重要。
    UNASSIGNED: Healthcare-associated infections (HCAIs) pose a significant challenge, impacting patient safety and treatment effectiveness. This retrospective study investigates the correlation between pre-operative hospital stays and HCAIs in ICU cardiac surgery patients.
    UNASSIGNED: Medical records of 35 patients who died post-cardiac surgery in the ICU were analyzed, focusing on the duration of pre-operative hospitalization.
    UNASSIGNED: Prolonged pre-operative stays strongly correlate (r = 0.993) with increased HCAIs, indicating a critical risk factor.
    UNASSIGNED: The duration of pre-operative hospital stays is pivotal in HCAI risk. Prospective multicenter studies are needed for validation, which is crucial for enhancing patient safety and treatment efficacy.
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  • 文章类型: Journal Article
    铜绿假单胞菌是最常见的医院病原菌之一,也是与抗菌素耐药性相关的主要新兴物种之一,已成为21世纪公共卫生的最大威胁之一。这种细菌具有多种毒力因子,这些毒力因子有助于急性和慢性感染的发病机理。本文旨在总结多重耐药性对铜绿假单胞菌毒力和适应性的影响。尽管通常认为抗性决定因素的获得与健身成本相关,多项研究支持耐药突变可能与毒力下降无关,和/或某些补偿性突变可能允许多药耐药菌株恢复其初始适应性.我们从微生物学的角度讨论了耐药谱和毒力之间的相互作用,以及结果的临床后果和经济影响。
    Pseudomonas aeruginosa is one of the most common nosocomial pathogens and part of the top emergent species associated with antimicrobial resistance that has become one of the greatest threat to public health in the twenty-first century. This bacterium is provided with a wide set of virulence factors that contribute to pathogenesis in acute and chronic infections. This review aims to summarize the impact of multidrug resistance on the virulence and fitness of P. aeruginosa. Although it is generally assumed that acquisition of resistant determinants is associated with a fitness cost, several studies support that resistance mutations may not be associated with a decrease in virulence and/or that certain compensatory mutations may allow multidrug resistance strains to recover their initial fitness. We discuss the interplay between resistance profiles and virulence from a microbiological perspective but also the clinical consequences in outcomes and the economic impact.
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  • 文章类型: Journal Article
    与10年前我们医院的流行病学相反,当时流行限制性核酸内切酶分析(REA)组菌株BI占从首发艰难梭菌感染(CDI)病例中恢复的艰难梭菌分离株的72%,2013-2015年,BI占首发CDI分离株的19%。另外两个REA组菌株占分离株的31%(Y,16%;DH,12%)。BI分离株对氟喹诺酮类和阿奇霉素的高度耐药比DH更常见,Y,和非BI/DH/Y分离株。多变量分析显示,与非BI病例相比,BI病例与氟喹诺酮暴露相关的可能性高2.47倍(95%置信区间[CI]:1.12-5.46)。此外,在第3代或第4代头孢菌素暴露后,DH病例发生CDI的几率是非DH病例的2.83倍(95%CI:1.06~7.54).从2005年到2015年,该医院的氟喹诺酮类药物使用量从113个峰值下降到56个抗菌天数/1,000个患者天数的低点。相比之下,头孢菌素的使用从42天增加到81天抗菌药物/1,000天。这些变化与环丙沙星的几何平均MIC降低(61.03至42.65mg/L,P=0.02)和头孢曲松的几何平均MIC增加(40.87至86.14mg/L,BI分离株之间P<0.01)。BI菌株仍然对氟喹诺酮类药物具有抗性,但氟喹诺酮使用的总体减少和头孢菌素使用的增加与BI患病率的下降有关,艰难梭菌菌株类型的多样性增加,以及菌株DH和Y的出现。
    In contrast to the epidemiology 10 years earlier at our hospital when the epidemic restriction endonuclease analysis (REA) group strain BI accounted for 72% of Clostridioides difficile isolates recovered from first-episode C. difficile infection (CDI) cases, BI represented 19% of first-episode CDI isolates in 2013-2015. Two additional REA group strains accounted for 31% of isolates (Y, 16%; DH, 12%). High-level resistance to fluoroquinolones and azithromycin was more common among BI isolates than among DH, Y, and non-BI/DH/Y isolates. Multivariable analysis revealed that BI cases were 2.47 times more likely to be associated with fluoroquinolone exposure compared to non-BI cases (95% confidence interval [CI]: 1.12-5.46). In addition, the odds of developing a CDI after third- or fourth-generation cephalosporin exposure was 2.83 times for DH cases than for non-DH cases (95% CI: 1.06-7.54). Fluoroquinolone use in the hospital decreased from 2005 to 2015 from a peak of 113 to a low of 56 antimicrobial days/1,000 patient days. In contrast, cephalosporin use increased from 42 to 81 antimicrobial days/1,000 patient days. These changes correlated with a decrease in geometric mean MIC for ciprofloxacin (61.03 to 42.65 mg/L, P = 0.02) and an increase in geometric mean MIC for ceftriaxone (40.87 to 86.14 mg/L, P < 0.01) among BI isolates. The BI strain remained resistant to fluoroquinolones, but an overall decrease in fluoroquinolone use and increase in cephalosporin use were associated with a decrease in the prevalence of BI, an increased diversity of C. difficile strain types, and the emergence of strains DH and Y.
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  • 文章类型: Journal Article
    抗生素敏感性结果的延迟可能会影响患者的预后。我们的研究评估了肠杆菌(ENT)引起的血流感染(BSI)患者的敏感性周转时间(TAT)和经验性抗菌治疗(IET)不足对住院死亡率和住院时间(LOS)的影响。这次回顾,多中心调查包括161个美国医疗机构的29,570个血液ENT阳性入院,评估了抗菌药物敏感性测试(AST)TAT之间的关联,碳青霉烯敏感性,以及经验性治疗对成年患者ENTBSI事件后BSI住院死亡率和LOS的影响。在调整结果协变量后,IET与适当经验性治疗(AET)组患者的BSI后住院死亡率显着高于[比值比(OR):1.61(95%CI:1.32,1.98);P<0.0001],当ASTTAT>63h时[OR:1.48(95%CI:1.16,1.90);P=0.0017]。碳青霉烯类非易感(carb-NS)ENTBSI患者的LOS明显较高(16.6天,95%CI:15.6,17.8)与碳青霉烯敏感(carb-S,12.2天,95%CI:11.8,12.6),(P<0.0001)。与TAT≤42h(参考)相比,延长的ASTTAT与57-65h和>65h的TAT的LOS更长(分别为P=0.005和P<0.0001)显着相关。经验性治疗不足(IET),carb-NS,和延迟ASTTAT与ENTBSI的不良医院结局显著相关。加速ENTBSI的ASTTAT并促进及时和充分治疗的工作流程可能会降低BSI后住院死亡率和LOS。重要性对于诊断为肠杆菌(ENT)引起的血流感染(BSI)的患者,抗生素敏感时间(AST)结果延迟可显著影响住院死亡率和住院时间.然而,从血液培养物采集到AST结果所经过的时间之间的这种关系仅被评估,到目前为止,在数量有限的出版物中。我们的研究重点是使用来自美国161个医疗机构的29,570例ENT阳性患者的回顾性数据来研究这一重要差距,因为我们相信对AST周转时间之间的动态有了透彻的了解,经验性治疗的充分性,BSI事件后死亡率,和住院时间将有助于指导有效的临床管理和优化ENT感染患者的结局.
    Delayed time to antimicrobial susceptibility results can impact patients\' outcomes. Our study evaluated the impact of susceptibility turnaround time (TAT) and inadequate empiric antibacterial therapy (IET) in patients with bloodstream infections (BSI) caused by Enterobacterales (ENT) species on in-hospital mortality and length of stay (LOS). This retrospective, multicenter investigation which included 29,570 blood ENT-positive admissions across 161 US healthcare facilities evaluated the association between antimicrobial susceptibility testing (AST) TAT, carbapenem susceptibility, and empiric therapy on post-BSI in-hospital mortality and LOS following an ENT BSI event in adult patients. After adjusting for outcomes covariates, post-BSI in-hospital mortality was significantly higher for patients in the IET vs adequate empiric therapy (AET) group [odds ratio (OR): 1.61 (95% CI: 1.32, 1.98); P < 0.0001], and when AST TAT was >63 h [OR:1.48 (95% CI: 1.16, 1.90); P = 0.0017]. Patients with carbapenem non-susceptible (carb-NS) ENT BSI had significantly higher LOS (16.6 days, 95% CI: 15.6, 17.8) compared to carbapenem susceptible (carb-S, 12.2 days, 95% CI: 11.8, 12.6), (P < 0.0001). Extended AST TAT was significantly associated with longer LOS for TAT of 57-65 h and >65 h (P = 0.005 and P< 0.0001, respectively) compared to TAT ≤42 h (reference). Inadequate empiric therapy (IET), carb-NS, and delayed AST TAT are significantly associated with adverse hospital outcomes in ENT BSI. Workflows that accelerate AST TAT for ENT BSIs and facilitate timely and adequate therapy may reduce post-BSI in-hospital mortality rate and LOS.IMPORTANCEFor patients diagnosed with bloodstream infections (BSI) caused by Enterobacterales (ENT), delayed time to antimicrobial susceptibility (AST) results can significantly impact in-hospital mortality and hospital length of stay. However, this relationship between time elapsed from blood culture collection to AST results has only been assessed, to date, in a limited number of publications. Our study focuses on this important gap using retrospective data from 29,570 blood ENT-positive admissions across 161 healthcare facilities in the US as we believe that a thorough understanding of the dynamic between AST turnaround time, adequacy of empiric therapy, post-BSI event mortality, and hospital length of stay will help guide effective clinical management and optimize outcomes of patients with ENT infections.
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