Adenocarcinoma

腺癌
  • 文章类型: Journal Article
    肺癌仍然是新加坡癌症相关死亡的重要原因,在过去的20年中,被诊断为非小细胞肺癌(NSCLC)的非吸烟者比例更高。与西方国家相比,新加坡诊断的肺癌中可靶向基因组改变的患病率更高,以及精准医学时代非小细胞肺癌不断扩大的治疗前景,这两个因素都强调了高效和有效的分子谱分析的重要性。
    本文为晚期非小细胞肺癌早期生物标志物检测提供了共识建议。这些建议是由新加坡的一个多学科肺癌专家小组提出的,目的是改善患者护理和长期预后。
    这些建议解决了高级和早期设置中的注意事项,并考虑到生物标志物测试实施中的挑战以及可用数据的局限性。讨论了肿瘤组织和液体活检的生物标志物测试。
    本共识声明讨论了将分子检测纳入早期至晚期NSCLC患者临床实践的方法和挑战。并为新加坡NSCLC患者的生物标志物检测提供实用建议。
    UNASSIGNED: Lung cancer remains an important cause of cancer-related mortality in Singapore, with a greater proportion of non-smokers diagnosed with non-small cell lung cancer (NSCLC) in the past 2 decades. The higher prevalence of targetable genomic alterations in lung cancer diagnosed in Singapore compared with countries in the West, as well as the expanding therapeutic landscape for NSCLC in the era of precision medicine, are both factors that underscore the importance of efficient and effective molecular profiling.
    UNASSIGNED: This article provides consensus recommendations for biomarker testing for early-stage to advanced NSCLC. These recommendations are made from a multidisciplinary group of lung cancer experts in Singapore with the aim of improving patient care and long-term outcomes.
    UNASSIGNED: The recommendations address the considerations in both the advanced and early-stage settings, and take into account challenges in the implementation of biomarker testing as well as the limitations of available data. Biomarker testing for both tumour tissue and liquid biopsy are discussed.
    UNASSIGNED: This consensus statement discusses the approaches and challenges of integrating molecular testing into clinical practice for patients with early- to late-stage NSCLC, and provides practical recommendations for biomarker testing for NSCLC patients in Singapore.
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  • 文章类型: Journal Article
    背景:最近,共有分子亚型(CMSs)已被提出作为一种可靠的基于转录组的结直肠癌(CRC)分类系统。四天冬蛋白(TSPAN)是跨膜蛋白。它们与许多恶性肿瘤的发展有关,包括CRC,通过它们作为多分子膜复合物的“主组织者”的作用。以前没有研究调查TSPAN与CMS分类之间的相关性。在这里,我们调查了TSPAN在患者来源的原发性CRC组织中的表达及其CMS分类.
    方法:RNA样本来自原发性CRC组织(n=100例诊断为结直肠腺癌的患者),并进行基于转录组的CMS分类和TSPAN相关分析的RNA测序。免疫组化(IHC)和免疫荧光(IF)染色观察蛋白表达水平。为了评估相关的生物学途径,进行了基因集富集分析。
    结果:在CRC组织中高表达的TSPAN基因(TSPAN8、TSPAN29和TSPAN30)中,TSPAN8在CMS3分类的原代组织中显著过表达。通过IHC和IF染色也观察到CMS3CRC中TSPAN8蛋白的过表达。作为基因集富集分析的结果,TSPAN8可能在CMS3CRC中基于激酶的代谢失调的组织信号复合物中发挥作用。
    结论:本研究报道了TSPAN8在CMS3CRC中的过表达。这项研究提出TSPAN8作为CMS3CRC的亚型特异性生物标志物。这一发现为未来基于CMS的CRC研究奠定了基础。这是一种复杂的疾病,也是全球癌症死亡的第二大原因。
    BACKGROUND: Recently, consensus molecular subtypes (CMSs) have been proposed as a robust transcriptome-based classification system for colorectal cancer (CRC). Tetraspanins (TSPANs) are transmembrane proteins. They have been associated with the development of numerous malignancies, including CRC, through their role as \"master organizers\" for multi-molecular membrane complexes. No previous study has investigated the correlation between TSPANs and CMS classification. Herein, we investigated the expression of TSPANs in patient-derived primary CRC tissues and their CMS classifications.
    METHODS: RNA samples were derived from primary CRC tissues (n = 100 patients diagnosed with colorectal adenocarcinoma) and subjected to RNA sequencing for transcriptome-based CMS classification and TSPAN-relevant analyses. Immunohistochemistry (IHC) and immunofluorescence (IF) stains were conducted to observe the protein expression level. To evaluate the relative biological pathways, gene-set enrichment analysis was performed.
    RESULTS: Of the highly expressed TSPAN genes in CRC tissues (TSPAN8, TSPAN29, and TSPAN30), TSPAN8 was notably overexpressed in CMS3-classified primary tissues. The overexpression of TSPAN8 protein in CMS3 CRC was also observed by IHC and IF staining. As a result of gene-set enrichment analysis, TSPAN8 may potentially play a role in organizing signaling complexes for kinase-based metabolic deregulation in CMS3 CRC.
    CONCLUSIONS: The present study reports the overexpression of TSPAN8 in CMS3 CRC. This study proposes TSPAN8 as a subtype-specific biomarker for CMS3 CRC. This finding provides a foundation for future CMS-based studies of CRC, a complex disease and the second leading cause of cancer mortality worldwide.
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  • 文章类型: Journal Article
    目的:Barrett食管(BE)是食管腺癌(EAC)的前体。内镜根除治疗(EET)可以有效根除BE和相关瘤形成,并且比监测内镜检查具有更大的危害和资源使用风险。本临床实践指南旨在通过为在BE和相关瘤形成中使用EET提供循证实践建议来告知临床医生和患者。
    方法:建议评估的分级,开发和评估框架用于评估证据并提出建议。小组根据临床医生和患者的重要性,优先考虑临床问题和结果,进行了证据审查,并使用证据到决策框架来制定关于在以下情况下对BE患者使用EET的建议:存在(1)高度发育不良,(2)低度发育不良,(3)无发育不良,(4)选择逐步内镜黏膜切除术(EMR)或局灶性EMR加消融,(5)内镜黏膜下剥离术与EMR的比较。临床建议基于理想和不良效果之间的平衡,患者价值观,成本,和健康公平考虑。
    结果:专家组同意在BE和相关瘤形成中使用EET的5项建议。根据现有证据,专家组提出了在有BE高度发育不良的患者中支持EET的强烈推荐和在无发育不良的BE中反对EET的有条件推荐.专家组提出了有条件的建议,支持EET用于BE低度发育不良;BE低度发育不良患者在降低食管癌死亡率方面对潜在危害的重视程度较高,对益处的重视程度较低(不确定),可以合理选择监测内镜检查。在有可见病变的患者中,有条件的建议支持局灶性EMR加消融,而不是逐步EMR.在进行切除的可见肿瘤性病变的患者中,根据病变特点,建议使用内镜黏膜切除术或内镜黏膜下剥离术.
    结论:本文件全面概述了EET在BE和相关瘤形成治疗中的适应症。还提供了有关实施EET的注意事项的指导。提供者应根据患者的偏好进行共享决策。强调了证据的局限性和差距,以指导未来的研究机会。
    Barrett\'s esophagus (BE) is the precursor to esophageal adenocarcinoma (EAC). Endoscopic eradication therapy (EET) can be effective in eradicating BE and related neoplasia and has greater risk of harms and resource use than surveillance endoscopy. This clinical practice guideline aims to inform clinicians and patients by providing evidence-based practice recommendations for the use of EET in BE and related neoplasia.
    The Grading of Recommendations Assessment, Development and Evaluation framework was used to assess evidence and make recommendations. The panel prioritized clinical questions and outcomes according to their importance for clinicians and patients, conducted an evidence review, and used the Evidence-to-Decision Framework to develop recommendations regarding the use of EET in patients with BE under the following scenarios: presence of (1) high-grade dysplasia, (2) low-grade dysplasia, (3) no dysplasia, and (4) choice of stepwise endoscopic mucosal resection (EMR) or focal EMR plus ablation, and (5) endoscopic submucosal dissection vs EMR. Clinical recommendations were based on the balance between desirable and undesirable effects, patient values, costs, and health equity considerations.
    The panel agreed on 5 recommendations for the use of EET in BE and related neoplasia. Based on the available evidence, the panel made a strong recommendation in favor of EET in patients with BE high-grade dysplasia and conditional recommendation against EET in BE without dysplasia. The panel made a conditional recommendation in favor of EET in BE low-grade dysplasia; patients with BE low-grade dysplasia who place a higher value on the potential harms and lower value on the benefits (which are uncertain) regarding reduction of esophageal cancer mortality could reasonably select surveillance endoscopy. In patients with visible lesions, a conditional recommendation was made in favor of focal EMR plus ablation over stepwise EMR. In patients with visible neoplastic lesions undergoing resection, the use of either endoscopic mucosal resection or endoscopic submucosal dissection was suggested based on lesion characteristics.
    This document provides a comprehensive outline of the indications for EET in the management of BE and related neoplasia. Guidance is also provided regarding the considerations surrounding implementation of EET. Providers should engage in shared decision making based on patient preferences. Limitations and gaps in the evidence are highlighted to guide future research opportunities.
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  • 文章类型: Journal Article
    背景:遗传性腺瘤性息肉病综合征,包括家族性腺瘤性息肉病和其他罕见的腺瘤性息肉病综合征,增加结直肠癌和其他癌症的终生风险。
    方法:一个由38名专家组成的小组召集,以更新2008年欧洲关于腺瘤性息肉病综合征患者临床管理的建议。此外,回顾并补充了其他罕见的单基因腺瘤性息肉病综合征。在对现有文献进行系统回顾并根据建议分级对证据进行分级后,回答了89个临床相关问题,评估,发展,和评价方法。确定了两个共识级别:共识阈值(≥67%的投票指南委员会成员在Delphi回合中投票“强烈同意”或“同意”)和高阈值(共识≥80%)。
    结果:关于遗传性腺瘤性息肉综合征的治疗,一百四十份声明达成了高度共识。
    结论:这些更新的指南提供了当前的,全面,以及对家族性腺瘤性息肉病患者的监测和治疗管理的循证实践建议,还包括与MUTYH相关的息肉病,胃腺癌和胃的近端息肉病以及其他最近发现的基于APC或MUTYH以外的其他基因的致病变异的息肉病综合征。由于这些疾病的罕见,病人应在专门中心管理。
    BACKGROUND: Hereditary adenomatous polyposis syndromes, including familial adenomatous polyposis and other rare adenomatous polyposis syndromes, increase the lifetime risk of colorectal and other cancers.
    METHODS: A team of 38 experts convened to update the 2008 European recommendations for the clinical management of patients with adenomatous polyposis syndromes. Additionally, other rare monogenic adenomatous polyposis syndromes were reviewed and added. Eighty-nine clinically relevant questions were answered after a systematic review of the existing literature with grading of the evidence according to Grading of Recommendations, Assessment, Development, and Evaluation methodology. Two levels of consensus were identified: consensus threshold (≥67% of voting guideline committee members voting either \'Strongly agree\' or \'Agree\' during the Delphi rounds) and high threshold (consensus ≥ 80%).
    RESULTS: One hundred and forty statements reached a high level of consensus concerning the management of hereditary adenomatous polyposis syndromes.
    CONCLUSIONS: These updated guidelines provide current, comprehensive, and evidence-based practical recommendations for the management of surveillance and treatment of familial adenomatous polyposis patients, encompassing additionally MUTYH-associated polyposis, gastric adenocarcinoma and proximal polyposis of the stomach and other recently identified polyposis syndromes based on pathogenic variants in other genes than APC or MUTYH. Due to the rarity of these diseases, patients should be managed at specialized centres.
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  • 文章类型: Journal Article
    背景:食管切除术联合围手术期多模式治疗是食管腺癌现代治愈性治疗的基石。这项研究的主要目的是评估教科书结果(TO)作为综合质量性能指标(QPI)及其围手术期参数对食管癌切除术患者生存率的影响。
    方法:从前瞻性维护的医院数据库中确定2014年1月至2022年12月期间在克赖斯特彻奇医院接受食道切除术的连续患者。进行了单变量和多变量分析,以评估每种复合和个体术后结局的预后因素。进行生存分析以评估这些结果对总生存的影响。
    结果:在研究期间共有108例患者接受了食管切除术。总体和Clavien-Dindo(CD)≥3级术后并发症发生率分别为62%和26%,分别。吻合口漏率为6.5%(n=7)。TO率,30天再入院率,30天死亡率为20%,13%,1%,分别。发现切除边缘和淋巴结疾病是降低生存率的独立预后因素。
    结论:最初定义的TO及其术后30天并发症和30天再入院的术后参数是食管癌手术的验证QPI。更新术后并发症参数以包括CD等级≥3的并发症会导致实现TO和增加生存率之间的正相关。我们的发现支持基于对此参数的更新重新定义TO的呼吁,使其成为食管癌手术更精确的QPI。
    BACKGROUND: Esophagectomy in combination with perioperative multimodal therapy is the cornerstone of modern curative treatment for esophageal adenocarcinoma. The primary aim of this study was to assess the influence of textbook outcome (TO) as a composite quality performance indicator (QPI) and its perioperative parameters on survival in patients who underwent esophagectomy with curative intent.
    METHODS: Consecutive patients who underwent an esophagectomy between January 2014 and December 2022 at Christchurch Hospital were identified from a prospectively maintained hospital database. Univariable and multivariable analyses were performed to assess prognostic factors for each composite and individual postoperative outcome. Survival analysis was performed to evaluate the influence of these outcomes on overall survival.
    RESULTS: A total of 108 patients underwent an esophagectomy during the study period. The overall and Clavien-Dindo (CD) grade ≥ 3 postoperative complication rates were 62% and 26%, respectively. The anastomotic leak rate was 6.5% (n = 7). The TO rate, 30-day readmission rate, and 30-day mortality rate were 20%, 13%, and 1%, respectively. Resection margin and nodal disease were found to be independent prognostic factors for reduced survival.
    CONCLUSIONS: TO as originally defined and its postoperative parameters of 30-day postoperative complications and 30-day readmission are validated QPIs of esophageal cancer surgery. Updating the postoperative complication parameter to include CD grade ≥ 3 complications resulted in a positive association between achieving TO and increased survival. Our findings support the call to redefine TO based on an update to this parameter, making it a more precise QPI of esophageal cancer surgery.
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  • 文章类型: Journal Article
    每年在估计的6,470个人中诊断外阴癌,并且绝大多数是组织学鳞状细胞癌。外阴癌占妇科恶性肿瘤的5%至8%。外阴癌的已知危险因素包括年龄增加,人乳头瘤病毒感染,吸烟,影响外阴的炎症,和免疫缺陷。大多数外阴新生在早期被诊断。存在较少组织学,包括黑色素瘤,乳房外Paget病,前庭大腺腺癌,疣状癌,基底细胞癌,和肉瘤.本手稿讨论了NCCN肿瘤学临床实践指南(NCCN指南)中概述的治疗建议,监视,全身治疗方案,和妇科幸存者。
    Vulvar cancer is annually diagnosed in an estimated 6,470 individuals and the vast majority are histologically squamous cell carcinomas. Vulvar cancer accounts for 5% to 8% of gynecologic malignancies. Known risk factors for vulvar cancer include increasing age, infection with human papillomavirus, cigarette smoking, inflammatory conditions affecting the vulva, and immunodeficiency. Most vulvar neoplasias are diagnosed at early stages. Rarer histologies exist and include melanoma, extramammary Paget\'s disease, Bartholin gland adenocarcinoma, verrucous carcinoma, basal cell carcinoma, and sarcoma. This manuscript discusses recommendations outlined in the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines) for treatments, surveillance, systemic therapy options, and gynecologic survivorship.
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  • Due to the unique nature of its anatomical location, the adenocarcinoma of esophagogastric junction (AEG) has been a subject of controversy and disagreement including its definition, staging, and treatment strategies. Chinse expert Consensus on Surgical Treatment of Adenocarcinoma of Esophagogastric Junction in China (2018 Edition) had been released in September 2018 and had played a pioneering role in unifying thoracic and general surgeons in China on surgical treatment strategies for AEG. Over the past five years, the emergence of several clinical research results on AEG has provided new clinical evidence for the selection of key surgical treatment strategies. Therefore, to further standardize the surgical treatment of AEG in China, Chinese Expert Consensus on Surgical Treatment of Adenocarcinoma of Esophagogastric Junction in China (2024 Edition) was released in 2024 by Chinese expert panel including 25 gastrointestinal surgeons and 24 thoracic surgeons. Based on the highest-level clinical research evidence in recent 5 years, this consensus ultimately formulates 29 recommendations on hotspots and key points on surgical treatment of AEG and summary 5 issues that are still awaiting further exploration. This review will provide a summary and detailed interpretation of the recommendations outlined in this consensus.
    食管胃结合部腺癌(AEG)由于解剖位置的特殊性,其定义、分期及治疗策略存在诸多分歧与争议。2018年9月,我国发布了首部《食管胃结合部腺癌外科治疗中国专家共识(2018年版)》,积极推动了胸外科和普通外科医师AEG外科治疗策略的规范性和一致性。5年来,多项AEG临床研究结果的呈现,为AEG的外科治疗关键环节策略的选择提供了新的临床证据。因此,为进一步提升我国AEG外科临床实践的诊疗水平,在中国医师协会内镜医师分会腹腔镜外科专业组、国际食管疾病学会中国分会(CSDE)、中国食管胃结合部腺癌研究协作组、中国抗癌协会胃癌专委会和中华医学会肿瘤分会胃肠肿瘤学组的共同牵头和组织下,由25名胃肠外科专家和24名胸外科专家组成2024版食管胃结合部腺癌外科治疗中国专家共识编审专家组进行讨论修订,主要基于近5年来高级别临床研究证据完成共识的更新。最终形成了29项AEG外科治疗相关的推荐陈述,并提出了5项尚待探索的外科问题。本文主要针对修订后的共识推荐陈述进行解读。.
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  • 文章类型: English Abstract
    The publication of Chinese expert consensus on the surgical treatment for adenocarcinoma of esophagogastric junction (2018 edition) has widely accelerated the standardization and homogenization on the surgical treatment of adenocarcinoma of esophagogastric junction (AEG). In China, the surgical outcomes of AEG, the universality and practicability of this consensus has also been affirmed after the clinical practice during the past 5 years. Due to the persistent increasing incidence of AEG, the specificity on anatomic site, clinicopathological characteristics, molecular biological characteristics, AEG had been always the hotspot of many clinical trials and more clinical evidences had been published. However, its definition, classification, staging, surgical approach, resection pattern, extent of lymphadenectomy, and the digestive tract reconstruction etc. remain controversial. In light of the above, it is necessary to update the 2018 edition of consensus. The Chinese expert consensus on the surgical treatment for adenocarcinoma of esophagogastric junction (2024 edition) is generated based on the currently available and best clinical evidence, the latest global guidelines or consensuses, and the opinions from the Chinese expert panel. The present consensus focuses on the key points of surgical treatment and issues in dispute, and provides scientific recommendations. The goal of this expert consensus was to improve the homogeneity in understanding and practice between Chinese thoracic and gastrointestinal surgeons, and to further standardize surgical treatment of AEG. Those pending issues in this consensus need high-quality clinical research to further investigate.
    《食管胃结合部腺癌外科治疗中国专家共识(2018版)》自颁布以来,很大程度上促进了我国食管胃结合部腺癌(AEG)的规范化、同质化诊疗,提升了我国AEG的外科治疗水平。经过5年的临床实践,该共识普适性和可行性已得到广泛证实。鉴于AEG发病率持续上升的趋势及其解剖部位、临床病理特征和分子生物学特征的特殊性,AEG成为近5年来外科临床研究的热点之一,并不断有新的临床研究证据发表。但是,对于AEG的定义、分型、分期、手术路径、切除范围、淋巴结清扫规范和消化道重建等外科问题,仍旧存在争议。鉴于此,有必要对2018版的共识进行更新。《食管胃结合部腺癌外科治疗中国专家共识(2024版)》在前一版的基础上,整合并分析5年来新的最佳临床证据,参考最新国际指南与共识,结合我国外科专家组意见,针对AEG外科治疗关键环节,包括AEG的定义和分型、手术径路、手术方式、淋巴结清扫范围、消化道重建方式及外科围手术期治疗等存在争议的问题,提出相关推荐建议,以期更好地规范AEG的外科治疗方式。在本共识中未解决的相关问题,尚需积极开展高质量的临床研究,以逐步探索和解决。.
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  • 文章类型: Journal Article
    食管癌的诊断和治疗具有挑战性,需要多学科的方法。更新的德国指南“食管鳞状细胞癌和腺癌的诊断和治疗-3.1版”的目的是为食管癌患者的管理提供实用和循证的建议。多学科专家小组根据对已发表的医学文献的广泛和系统的评估以及完善的方法的应用(例如,牛津证据分级计划,建议的分级)。需要对原发性肿瘤以及淋巴结和远处转移进行准确的诊断评估,以指导患者在初次诊断为食道癌后进行适当的治疗。对于高级别上皮内瘤变或粘膜癌应进行内镜切除。内镜切除是否是确定的治疗措施取决于切除标本的组织病理学评估。食管切除术应微创或与开放手术(混合技术)结合进行。因为单纯手术治疗局部晚期食管癌的预后较差,多模式治疗建议。在食管或食管胃交界处的局部晚期腺癌中,围手术期化疗或术前放化疗。在食管局部晚期鳞状细胞癌中,术前应进行放化疗,然后进行完全切除或无手术的明确放化疗。在新辅助放化疗和R0切除鳞状细胞癌或腺癌后切除标本中残留肿瘤的情况下,应给予nivolumab辅助免疫疗法.全身性姑息治疗选择(化疗,化疗加免疫疗法,单独的免疫治疗)在不可切除或转移性食管癌中取决于组织学,并根据PD-L1和/或Her2表达进行分层。
    Diagnosis and therapy of esophageal carcinoma is challenging and requires a multidisciplinary approach. The purpose of the updated German guideline \"Diagnosis and Treatment of Squamous Cell Carcinoma and Adenocarcinoma of the Esophagus-version 3.1\" is to provide practical and evidence-based advice for the management of patients with esophageal cancer. Recommendations were developed by a multidisciplinary expert panel based on an extensive and systematic evaluation of the published medical literature and the application of well-established methodologies (e.g. Oxford evidence grading scheme, grading of recommendations). Accurate diagnostic evaluation of the primary tumor as well as lymph node and distant metastases is required in order to guide patients to a stage-appropriate therapy after the initial diagnosis of esophageal cancer. In high-grade intraepithelial neoplasia or mucosal carcinoma endoscopic resection shall be performed. Whether endoscopic resection is the definitive therapeutic measure depends on the histopathological evaluation of the resection specimen. Esophagectomy should be performed minimally invasive or in combination with open procedures (hybrid technique). Because the prognosis in locally advanced esophageal carcinoma is poor with surgery alone, multimodality therapy is recommended. In locally advanced adenocarcinomas of the esophagus or esophagogastric junction, perioperative chemotherapy or preoperative radiochemotherapy should be administered. In locally advanced squamous cell carcinomas of the esophagus, preoperative radiochemotherapy followed by complete resection or definitive radiochemotherapy without surgery should be performed. In the case of residual tumor in the resection specimen after neoadjuvant radiochemotherapy and R0 resection of squamous cell carcinoma or adenocarcinoma, adjuvant immunotherapy with nivolumab should be given. Systemic palliative treatment options (chemotherapy, chemotherapy plus immunotherapy, immunotherapy alone) in unresectable or metastastic esophageal cancer depend on histology and are stratified according to PD-L1 and/or Her2 expression.
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  • 文章类型: Journal Article
    背景:前列腺癌(PRAD)是全球男性中常见的癌症诊断,然而,就其发展和侵略的分子基础而言,我们的知识仍然存在巨大差距。它大多是惰性和缓慢生长的,但是侵袭性前列腺癌需要早期识别以优化治疗,以降低死亡率。
    方法:基于与PRAD相关的TCGA转录组数据和相关的临床元数据,我们确定了样品的格里森等级,并用它来执行:(I)格里森等级线性建模,其次是对照的5个对比和等级之间的10个对比;和(ii)通过加权基因相关网络分析(WGCNA)的格里森等级明智网络建模。从上述分析中获得候选生物标志物并发现共识。共识生物标志物被用作特征空间来训练ML模型,用于将样本分类为良性,懒惰的或好斗的。
    结果:统计建模产生了77个Gleason分级显著基因,而WGCNA算法在分级显著模块中产生了1003个性状特异性关键基因。两种方法的一致分析确定了1级中的两个基因(SLC43A1和PHGR1),4级基因26个(包括LOC100128675,PPP1R3C,NECAB1,UBXN10,SERPINA5,CLU,RASL12,DGKG,FHL1、NCAM1和CEND1),和7个基因在5级(CBX2,DPYS,FAM72B,SHCBP1,TMEM132A,TPX2,UBE2C)。RandomForest模型对这35种生物标志物进行了三元分类问题的训练和优化,在外部验证中获得了86%的平衡准确性。
    结论:多个并行计算策略的共识具有未掩盖的候选Gleason等级特异性生物标志物。PRAD类,以这些生物标志物为特征的经过验证的AI模型取得了良好的性能,并可用于预测前列腺癌的分化。PRADclass可用于学术用途:https://apalania。shinyapps.io/pradclass(在线)和https://github.com/apalania/pradclass(命令行界面)。
    Prostate adenocarcinoma (PRAD) is a common cancer diagnosis among men globally, yet large gaps in our knowledge persist with respect to the molecular bases of its progression and aggression. It is mostly indolent and slow-growing, but aggressive prostate cancers need to be recognized early for optimising treatment, with a view to reducing mortality.
    Based on TCGA transcriptomic data pertaining to PRAD and the associated clinical metadata, we determined the sample Gleason grade, and used it to execute: (i) Gleason-grade wise linear modeling, followed by five contrasts against controls and ten contrasts between grades; and (ii) Gleason-grade wise network modeling via weighted gene correlation network analysis (WGCNA). Candidate biomarkers were obtained from the above analysis and the consensus found. The consensus biomarkers were used as the feature space to train ML models for classifying a sample as benign, indolent or aggressive.
    The statistical modeling yielded 77 Gleason grade-salient genes while the WGCNA algorithm yielded 1003 trait-specific key genes in grade-wise significant modules. Consensus analysis of the two approaches identified two genes in Grade-1 (SLC43A1 and PHGR1), 26 genes in Grade-4 (including LOC100128675, PPP1R3C, NECAB1, UBXN10, SERPINA5, CLU, RASL12, DGKG, FHL1, NCAM1, and CEND1), and seven genes in Grade-5 (CBX2, DPYS, FAM72B, SHCBP1, TMEM132A, TPX2, UBE2C). A RandomForest model trained and optimized on these 35 biomarkers for the ternary classification problem yielded a balanced accuracy ∼ 86% on external validation.
    The consensus of multiple parallel computational strategies has unmasked candidate Gleason grade-specific biomarkers. PRADclass, a validated AI model featurizing these biomarkers achieved good performance, and could be trialed to predict the differentiation of prostate cancers. PRADclass is available for academic use at: https://apalania.shinyapps.io/pradclass (online) and https://github.com/apalania/pradclass (command-line interface).
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