关键词: Alphafold KIF5A crosslinking mass spectrometry cytoskeleton inhibition mechanism kinesin negative-stain electron microscopy protein crosslinking structure-function

Mesh : Humans Exons Kinesins / chemistry genetics Mutation Protein Isoforms / chemistry genetics

来  源:   DOI:10.1016/j.jbc.2024.105713   PDF(Pubmed)

Abstract:
Kinesin-1 is a microtubule motor that transports cellular cargo along microtubules. KIF5A is one of three kinesin-1 isoforms in humans, all of which are autoinhibited by an interaction between the motor and an IAK motif in the proximal region of the C-terminal tail. The C-terminal tail of KIF5A is ∼80 residues longer than the other two kinesin-1 isoforms (KIF5B and KIF5C) and it is unclear if it contributes to autoinhibition. Mutations in KIF5A cause neuronal diseases and could affect autoinhibition, as reported for a mutation that skips exon 27, altering its C-terminal sequence. Here, we combined negative-stain electron microscopy, crosslinking mass spectrometry (XL-MS) and AlphaFold2 structure prediction to determine the molecular architecture of the full-length autoinhibited KIF5A homodimer, in the absence of light chains. We show that KIF5A forms a compact, bent conformation, through a bend between coiled-coils 2 and 3, around P687. XL-MS of WT KIF5A revealed extensive interactions between residues in the motor, between coiled-coil 1 and the motor, between coiled-coils 1 and 2, with coiled-coils 3 and 4, and the proximal region of the C-terminal tail and the motor in the autoinhibited state, but not between the distal C-terminal region and the rest of the molecule. While negative-stain electron microscopy of exon-27 KIF5A splice mutant showed the presence of autoinhibited molecules, XL-MS analysis suggested that its autoinhibited state is more labile. Our model offers a conceptual framework for understanding how mutations within the motor and stalk domain may affect motor activity.
摘要:
Kinesin-1是一种微管马达,可沿着微管运输细胞货物。KIF5A是人类三种驱动蛋白-1亚型之一,所有这些都被电机和C末端尾部近端区域的IAK基序之间的相互作用自动抑制。KIF5A的C末端尾部比其他两种驱动蛋白-1同工型(KIF5B和KIF5C)长80个残基,目前尚不清楚它是否有助于自身抑制。KIF5A的突变会引起神经元疾病,并可能影响自身抑制,如报道的,跳过外显子27的突变,改变其C端序列。这里,我们结合了负染色电子显微镜,交联质谱(XL-MS)和AlphaFold2结构预测,以确定全长自抑制KIF5A同二聚体的分子结构,在没有轻链的情况下。我们证明KIF5A形成了一个紧凑的,弯曲的构象,通过盘绕线圈2和3之间的弯曲,围绕P687。WTKIF5A的XL-MS揭示了电机中残基之间的广泛相互作用,在线圈1和电机之间,在卷曲线圈1和2之间,具有卷曲线圈3和4,以及C末端尾部的近端区域和处于自动禁止状态的电机,但不在远端C末端区域和分子的其余部分之间。虽然外显子-27KIF5A剪接突变体的阴性染色电子显微镜显示存在自抑制分子,XL-MS分析表明其自抑制状态更不稳定。我们的模型提供了一个概念框架,用于了解运动和茎域内的突变如何影响运动活动。
公众号