workflow analysis

工作流分析
  • 文章类型: Journal Article
    智能手机技术与患者呼叫铃系统的集成提供了机会,通过支持护士直接沟通和优先提供护理服务的能力来提高患者的安全性。然而,挑战与实现警报支持和警报疲劳之间的平衡有关,包括分散护士对患者护理的注意力,或使护士对其他警报和电话脱敏[1]。我们的医院在护士的智能手机上有大量无线警报的定量和轶事报告。护士抱怨说,手机产生的噪音太多,无法消耗或及时确定优先级。初步警报清单显示,BedExit无线警报是许多单位和医院的信号量的主要贡献者。缺乏标准政策和工作流改进流程增加了令人讨厌的警报,使这些健康信息技术变得不那么有用和安全。使用系统数据,工作流观察,和护理面试,Singh和Sittig的HIT安全框架[2]用于识别和优先考虑影响端到端离床警报工作流程的社会技术因素和干预措施。这项研究回顾了社会技术模型和框架在减少无线呼叫而不引入风险和影响患者护理的应用。
    Integration of smartphone technology with the patient call-bell system provides the opportunity to enhance patient safety by supporting nurses\' ability to communicate and prioritize care delivery directly. However, challenges are associated with achieving a balance between alarm support and alarm fatigue, including distracting nurses from patient care or desensitizing the nurse to other alarms and calls [1]. Our hospitals have quantitative and anecdotal reports of seriously high volumes of wireless alerts on the nurses\' smartphones. Nurses have complained that the phones are generating too much noise to consume or timely prioritize. Preliminary alarm inventory revealed the Bed Exit wireless alert as a leading contributor of signal volume across many units and hospitals. The lack of standard policies and workflow improvement processes has increased nuisance alarms, making these Health Information Technologies less useful and safe. Using system data, workflow observations, and nursing interviews, Singh and Sittig\'s HIT Safety framework [2] was applied to identify and prioritize sociotechnical factors and interventions that impact the end-to-end Bed Exit alarm workflow. This study reviews the application of sociotechnical models and frameworks to reduce wireless calls without introducing risk and impacting patient care.
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  • 文章类型: Journal Article
    目的:尽管手术室的工作流程分析已经取得了很大进展,目前的系统仍然局限于研究。在寻求一个强大的,通用设置,尽管它有许多优点,但几乎没有任何关注音频的维度,比如低成本,location,和视觉独立性,或者几乎不需要处理能力。
    方法:我们提出了一种基于音频的事件检测方法,该方法仅依赖于两个麦克风在手术室中捕获声音。因此,创建了一个新的数据集,其中记录了超过63小时的音频,并在Isar大学医院进行了注释。声音文件被标记,预处理,增强,并随后转换为log-mel-谱图,该谱图用作使用预训练的卷积神经网络进行事件分类的视觉输入。
    结果:比较多种架构,我们能够证明即使是轻量级的模型,例如MobileNet,已经可以提供有希望的结果。数据增强还改进了11个定义类的分类,包括不同类型的凝血,手术台的运动以及一个闲置的类。使用新创建的音频数据集,总体准确率为90%,准确率为91%,F1评分为91%,证明了在手术室中基于音频的事件识别的可行性。
    结论:有了这第一个概念证明,我们证明,音频事件可以作为一个有意义的信息源,超越口语,可以很容易地集成到未来的工作流识别管道使用计算廉价的架构。
    OBJECTIVE: Even though workflow analysis in the operating room has come a long way, current systems are still limited to research. In the quest for a robust, universal setup, hardly any attention has been given to the dimension of audio despite its numerous advantages, such as low costs, location, and sight independence, or little required processing power.
    METHODS: We present an approach for audio-based event detection that solely relies on two microphones capturing the sound in the operating room. Therefore, a new data set was created with over 63 h of audio recorded and annotated at the University Hospital rechts der Isar. Sound files were labeled, preprocessed, augmented, and subsequently converted to log-mel-spectrograms that served as a visual input for an event classification using pretrained convolutional neural networks.
    RESULTS: Comparing multiple architectures, we were able to show that even lightweight models, such as MobileNet, can already provide promising results. Data augmentation additionally improved the classification of 11 defined classes, including inter alia different types of coagulation, operating table movements as well as an idle class. With the newly created audio data set, an overall accuracy of 90%, a precision of 91% and a F1-score of 91% were achieved, demonstrating the feasibility of an audio-based event recognition in the operating room.
    CONCLUSIONS: With this first proof of concept, we demonstrated that audio events can serve as a meaningful source of information that goes beyond spoken language and can easily be integrated into future workflow recognition pipelines using computational inexpensive architectures.
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  • 文章类型: Journal Article
    手术注意事项是患者护理的重要组成部分。然而,手动编写它们容易出现人为错误,特别是在高压临床环境中。从录像中自动生成操作说明可以减轻一些行政负担,提高准确性,并提供更多信息。为了实现这一点,内窥镜垂体手术,通过专家共识确定了27个步骤。然后,为这项研究记录的97个视频,每个步骤的时间戳由专业外科医生注释.要自动确定视频中是否存在步骤,创建了一个三级架构。首先,每一步,卷积神经网络用于对视频的每帧进行二值图像分类。其次,每一步,将二进制帧分类传递给鉴别器进行二进制视频分类。第三,对于每个视频,二进制视频分类被传递到累加器进行多标签步骤分类。该建筑接受了77个视频的培训,并在20个视频上进行了测试,其中获得0.80加权F1评分。将分类输入到基于临床的预定义模板中,并进一步丰富了额外的视频分析。因此,这项工作表明从手术视频自动生成手术笔记是可行的,并可以在记录期间协助外科医生。
    Operation notes are a crucial component of patient care. However, writing them manually is prone to human error, particularly in high pressured clinical environments. Automatic generation of operation notes from video recordings can alleviate some of the administrative burdens, improve accuracy, and provide additional information. To achieve this for endoscopic pituitary surgery, 27-steps were identified via expert consensus. Then, for the 97-videos recorded for this study, a timestamp of each step was annotated by an expert surgeon. To automatically determine whether a step is present in a video, a three-stage architecture was created. Firstly, for each step, a convolution neural network was used for binary image classification on each frame of a video. Secondly, for each step, the binary frame classifications were passed to a discriminator for binary video classification. Thirdly, for each video, the binary video classifications were passed to an accumulator for multi-label step classification. The architecture was trained on 77-videos, and tested on 20-videos, where a 0.80 weighted-F1 score was achieved. The classifications were inputted into a clinically based predefined template, and further enriched with additional video analytics. This work therefore demonstrates automatic generation of operative notes from surgical videos is feasible, and can assist surgeons during documentation.
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  • 文章类型: Journal Article
    目的:在线自适应放射治疗(oART)遵循与传统放射治疗不同的治疗模式,正因为如此,资源,实施,所需的工作流是独一无二的。本报告的目的是概述我们机构建立的经验,组织,并使用Ethos治疗系统实施oART计划。
    方法:我们包括使用的资源,使用的操作模型,程序创建时间表,以及我们在实施和运营OART计划方面的机构经验。此外,我们提供了我们第一年的临床经验的详细总结,我们每天提供超过1000个自适应分数。对于所有的治疗,在线适应的不同阶段,主要患者设置,初始kV-CBCT采集,影响者结构的轮廓审查和编辑,目标审查和编辑,计划评估和选择,Mobius3D第二次检查和自适应QA,用于位置验证的第二kV-CBCT,治疗交付,和病人离开房间,进行了分析。
    结果:我们回顾性分析了2021年8月至2022年8月治疗的97例患者的数据。对一千六百七十七个单独的馏分进行了处理和分析,632(38%)是非适应性的,1045(62%)是适应性的。97例患者中有74例(76%)接受了标准分割治疗,23例(24%)接受了立体定向治疗。对于适应性治疗,在92%的治疗中选择了生成的适应性计划.平均(±std),自适应会话从开始到结束需要34.52±11.42分钟。整个自适应过程(从轮廓生成开始到验证CBCT),由物理学家(和医生在选定的日子)执行,为19.84±8.21分钟。
    结论:我们介绍了我们机构使用Ethos治疗系统调试oART计划的经验。从项目开始到第一位患者的治疗花了我们12个月的时间,治疗1000个适应性部分花了12个月的时间。对递送部分的回顾性分析显示,平均总体治疗时间为约35分钟,而适应性治疗组分的平均时间为约20分钟。
    OBJECTIVE: Online Adaptive Radiation Therapy (oART) follows a different treatment paradigm than conventional radiotherapy, and because of this, the resources, implementation, and workflows needed are unique. The purpose of this report is to outline our institution\'s experience establishing, organizing, and implementing an oART program using the Ethos therapy system.
    METHODS: We include resources used, operational models utilized, program creation timelines, and our institutional experiences with the implementation and operation of an oART program. Additionally, we provide a detailed summary of our first year\'s clinical experience where we delivered over 1000 daily adaptive fractions. For all treatments, the different stages of online adaption, primary patient set-up, initial kV-CBCT acquisition, contouring review and edit of influencer structures, target review and edits, plan evaluation and selection, Mobius3D 2nd check and adaptive QA, 2nd kV-CBCT for positional verification, treatment delivery, and patient leaving the room, were analyzed.
    RESULTS: We retrospectively analyzed data from 97 patients treated from August 2021-August 2022. One thousand six hundred seventy seven individual fractions were treated and analyzed, 632(38%) were non-adaptive and 1045(62%) were adaptive. Seventy four of the 97 patients (76%) were treated with standard fractionation and 23 (24%) received stereotactic treatments. For the adaptive treatments, the generated adaptive plan was selected in 92% of treatments. On average(±std), adaptive sessions took 34.52 ± 11.42 min from start to finish. The entire adaptive process (from start of contour generation to verification CBCT), performed by the physicist (and physician on select days), was 19.84 ± 8.21 min.
    CONCLUSIONS: We present our institution\'s experience commissioning an oART program using the Ethos therapy system. It took us 12 months from project inception to the treatment of our first patient and 12 months to treat 1000 adaptive fractions. Retrospective analysis of delivered fractions showed that the average overall treatment time was approximately 35 min and the average time for the adaptive component of treatment was approximately 20 min.
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  • 文章类型: Journal Article
    尽管数据科学无处不在,我们还远远没有严格理解数据科学中的编码是如何执行的。尽管科学文献暗示了数据科学编码的迭代和探索性,我们需要进一步的经验证据来详细了解这种做法及其工作流程。这种理解对于认识数据科学家的需求至关重要,例如,通知工具支持。为了更深入地理解数据科学编码的迭代和探索性,我们分析了GitHub存储库中公开提供的470个Jupyter笔记本。我们专注于数据科学家在不同类型的数据科学活动之间过渡的程度,或步骤(如数据预处理和建模),以及这种转变的频率和共现。对于我们的分析,我们在五位数据科学专家的帮助下开发了一个数据集,他手动注释了上述470个笔记本中每个代码单元的数据科学步骤。利用一阶马尔可夫链模型,我们提取了过渡,并分析了不同步骤之间的过渡概率。除了为数据科学编码的实施实践提供更深入的见解之外,我们的研究结果提供了证据,证明数据科学工作流程中的步骤确实是迭代的,并揭示了特定的模式。我们还评估了使用带注释的数据集来训练机器学习分类器以预测给定代码单元的数据科学步骤。我们通过比较应用于(a)预测数据集和(b)专家标记的数据集的工作流分析来调查分类的代表性,发现10级数据科学步骤预测问题的F1得分约为71%。
    Despite the ubiquity of data science, we are far from rigorously understanding how coding in data science is performed. Even though the scientific literature has hinted at the iterative and explorative nature of data science coding, we need further empirical evidence to understand this practice and its workflows in detail. Such understanding is critical to recognise the needs of data scientists and, for instance, inform tooling support. To obtain a deeper understanding of the iterative and explorative nature of data science coding, we analysed 470 Jupyter notebooks publicly available in GitHub repositories. We focused on the extent to which data scientists transition between different types of data science activities, or steps (such as data preprocessing and modelling), as well as the frequency and co-occurrence of such transitions. For our analysis, we developed a dataset with the help of five data science experts, who manually annotated the data science steps for each code cell within the aforementioned 470 notebooks. Using the first-order Markov chain model, we extracted the transitions and analysed the transition probabilities between the different steps. In addition to providing deeper insights into the implementation practices of data science coding, our results provide evidence that the steps in a data science workflow are indeed iterative and reveal specific patterns. We also evaluated the use of the annotated dataset to train machine-learning classifiers to predict the data science step(s) of a given code cell. We investigate the representativeness of the classification by comparing the workflow analysis applied to (a) the predicted data set and (b) the data set labelled by experts, finding an F1-score of about 71% for the 10-class data science step prediction problem.
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  • 文章类型: Journal Article
    未经评估:手术效率和变异性是最佳结果的关键因素,患者体验,护理团队经验,以及每个疾病发作的治疗总费用。发展可扩展的机会仍然存在,量化最大效率和减少变异性的手术行为的客观方法。然后,可以使用这种客观措施来为外科医生提供及时和用户特定的反馈,以监测表现并促进培训和学习。在这项研究中,我们使用客观的任务级分析来确定单外科医生在5年时间内机器人辅助袖状胃切除术(RSG)各手术步骤中的手术效率和变异性的主要因素.这些结果使可行的见解,既可以补充人口水平分析,又可以根据个人外科医生的实践和经验进行定制。
    UNASSIGNED:审查了2015年至2019年由一名外科医生执行的77例RSG手术的术中视频记录,并将其分为手术任务。当控制机器人辅助手术系统时,外科医生发起的事件用于计算客观指标。使用一系列多阶段回归分析来确定:是否有任何特定任务或患者体重指数(BMI)在统计上影响程序持续时间;哪些客观指标影响关键任务效率;以及哪些任务在统计上有助于程序变异性。
    UNASSIGNED:发现胃夹层是手术持续时间的最重要因素(β=0.344,p<0.001;R=0.81,p<0.001),其次是手术不活动和胃吻合。未发现患者BMI与手术持续时间有统计学显着相关(R=-0.01,p=0.90)。能量活化率,基于事件的机器人系统度量,被确定为预测胃夹层持续时间和区分早期和晚期病例组的主要特征。在较早(2015-2016)和较晚(2017-2019)组之间观察到手术变异性的降低(IQR=14.20minvs.6.79分钟)。发现胃夹层对手术变异性的贡献最大(β=0.74,p<0.001)。
    UNASSIGNED:基于手术任务的客观分析用于确定手术效率和变异性的主要因素。我们相信这种数据驱动的方法将使临床团队能够量化外科医生特定的表现,并确定专注于影响整体手术效率和一致性的主要手术任务的可操作机会。
    UNASSIGNED: Surgical efficiency and variability are critical contributors to optimal outcomes, patient experience, care team experience, and total cost to treat per disease episode. Opportunities remain to develop scalable, objective methods to quantify surgical behaviors that maximize efficiency and reduce variability. Such objective measures can then be used to provide surgeons with timely and user-specific feedbacks to monitor performances and facilitate training and learning. In this study, we used objective task-level analysis to identify dominant contributors toward surgical efficiency and variability across the procedural steps of robotic-assisted sleeve gastrectomy (RSG) over a five-year period for a single surgeon. These results enable actionable insights that can both complement those from population level analyses and be tailored to an individual surgeon\'s practice and experience.
    UNASSIGNED: Intraoperative video recordings of 77 RSG procedures performed by a single surgeon from 2015 to 2019 were reviewed and segmented into surgical tasks. Surgeon-initiated events when controlling the robotic-assisted surgical system were used to compute objective metrics. A series of multi-staged regression analysis were used to determine: if any specific tasks or patient body mass index (BMI) statistically impacted procedure duration; which objective metrics impacted critical task efficiency; and which task(s) statistically contributed to procedure variability.
    UNASSIGNED: Stomach dissection was found to be the most significant contributor to procedure duration (β = 0.344, p< 0.001; R = 0.81, p< 0.001) followed by surgical inactivity and stomach stapling. Patient BMI was not found to be statistically significantly correlated with procedure duration (R = -0.01, p = 0.90). Energy activation rate, a robotic system event-based metric, was identified as a dominant feature in predicting stomach dissection duration and differentiating earlier and later case groups. Reduction of procedure variability was observed between earlier (2015-2016) and later (2017-2019) groups (IQR = 14.20 min vs. 6.79 min). Stomach dissection was found to contribute most to procedure variability (β = 0.74, p < 0.001).
    UNASSIGNED: A surgical task-based objective analysis was used to identify major contributors to surgical efficiency and variability. We believe this data-driven method will enable clinical teams to quantify surgeon-specific performance and identify actionable opportunities focused on the dominant surgical tasks impacting overall procedure efficiency and consistency.
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  • 文章类型: Journal Article
    目的:我们解决腹腔镜手术中的在线手术相位识别问题,这是开发上下文感知支持系统的关键。我们提出了一种新颖的方法,通过对时间邻域进行精确建模来考虑手术视频中的时间上下文。
    方法:我们提出了一个两阶段模型来执行阶段识别。CNN模型用作特征提取器以将RGB帧投影到高维特征空间中。我们介绍了一种用于手术阶段识别的新颖范例,该范例利用图神经网络来合并时间信息。与递归神经网络和时间卷积网络不同,我们基于图的方法为时间关系建模提供了一种更通用和灵活的方法。每个帧是图中的一个节点,图中的边用于定义节点之间的时间连接。时间邻域的灵活配置是以失去时间顺序为代价的。为了缓解这种情况,我们的方法通过编码帧位置来考虑时间顺序,这对于可靠地预测手术阶段很重要。
    结果:实验是在包含80个注释视频的公共Choch80数据集上进行的。实验结果突出了与该数据集上的最先进的模型相比,所提出的方法的优越性能。
    结论:提出了一种用于制定基于视频的手术阶段识别的新方法。结果表明,可以使用基于图的模型来合并时间信息,和位置编码对于有效地利用时间信息是重要的。图形网络为在手术阶段识别中使用证据理论进行不确定性分析提供了可能性。
    OBJECTIVE: We tackle the problem of online surgical phase recognition in laparoscopic procedures, which is key in developing context-aware supporting systems. We propose a novel approach to take temporal context in surgical videos into account by precise modeling of temporal neighborhoods.
    METHODS: We propose a two-stage model to perform phase recognition. A CNN model is used as a feature extractor to project RGB frames into a high-dimensional feature space. We introduce a novel paradigm for surgical phase recognition which utilizes graph neural networks to incorporate temporal information. Unlike recurrent neural networks and temporal convolution networks, our graph-based approach offers a more generic and flexible way for modeling temporal relationships. Each frame is a node in the graph, and the edges in the graph are used to define temporal connections among the nodes. The flexible configuration of temporal neighborhood comes at the price of losing temporal order. To mitigate this, our approach takes temporal orders into account by encoding frame positions, which is important to reliably predict surgical phases.
    RESULTS: Experiments are carried out on the public Cholec80 dataset that contains 80 annotated videos. The experimental results highlight the superior performance of the proposed approach compared to the state-of-the-art models on this dataset.
    CONCLUSIONS: A novel approach for formulating video-based surgical phase recognition is presented. The results indicate that temporal information can be incorporated using graph-based models, and positional encoding is important to efficiently utilize temporal information. Graph networks open possibilities to use evidence theory for uncertainty analysis in surgical phase recognition.
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  • 文章类型: Journal Article
    The objective of this study was to clarify gaze information patterns of nurses gathering patient information using electronic health records. We recorded the electronic health record screen on which nurses\' gazes were presented using an eye tracker and analyzed the recorded images. The analysis revealed two types of gaze information patterns of nurses engaged in patient information gathering. However, no regularity was observed in the gaze information patterns of the nurses viewing the electronic health record sections after selecting a patient.
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  • 文章类型: Journal Article
    背景:术中数字减影血管造影(ioDSA)可以在神经血管手术后进行早期治疗评估。然而,这一程序的价值和效率一直存在争议。我们已经评估了配备ArtisZeego机器人c臂的混合手术室的附加价值,效率和工作流程。此外,我们进行了风险-收益分析,并与吲哚菁绿(ICG)血管造影进行了比较.
    方法:连续3年,我们检查了所有神经血管患者,在混合手术室进行风险效益分析。在使用微多普勒和ICG血管造影以获得最佳手术效果后,每位患者都接受了额外的ioDSA,以寻找可能导致手术策略或结果改变的残留物或不利的夹子放置。此外,工作流分析审查操作步骤,人员定位,成本,对随机选择的病例进行技术错误或并发症.
    结果:54名患者被纳入风险-效益分析,22在工作流分析中脑血管手术的平均持续时间为4h58min2min35s占ICG血管造影,46min4s为ioDSA。不良事件发生在一个ioDSA期间。在风险效益分析中,在43例动脉瘤手术中,ioDSA能够检测到2例(4.7%)的灌注休息,之前无法通过ICG血管造影观察。在动静脉畸形(AVM)手术中,11例接受检查的患者中,有1例(7,7%)在ioDSA中显示残留,并导致额外切除.乌尔姆大学ioDSA的平均成本估计为1928,00€。
    结论:根据我们的结果,ioDSA相关并发症较低。ioDSA的相关发现可能会避免额外的干预,然而,由于高成本和低可用性,由于ICG血管造影同样安全,但成本较低,可获得更好的可用性,因此主要优势可能在于对部分患有复合神经血管病变的患者进行治疗.
    BACKGROUND: Intraoperative digital subtraction angiography (ioDSA) allows early treatment evaluation after neurovascular procedures. However, the value and efficiency of this procedure has been discussed controversially. We have evaluated the additional value of hybrid operating room equipped with an Artis Zeego robotic c-arm regarding cost, efficiency and workflow. Furthermore, we have performed a risk-benefit analysis and compared it with indocyanine green (ICG) angiography.
    METHODS: For 3 consecutive years, we examined all neurovascular patients, treated in the hybrid operating theater in a risk-benefit analysis. After using microdoppler and ICG angiography for best operative result, every patient received an additional ioDSA to look for remnants or unfavorable clip placement which might lead to a change of operating strategy or results. Furthermore, a workflow-analysis reviewing operating steps, staff positioning, costs, technical errors or complications were conducted on randomly selected cases.
    RESULTS: 54 patients were enrolled in the risk-benefit analysis, 22 in the workflow analysis. The average duration of a cerebrovascular operation was 4 h 58 min 2 min 35 s accounted for ICG angiography, 46 min 4 s for ioDSA. Adverse events occurred during one ioDSA. In risk-benefit analysis, ioDSA was able to detect a perfusion rest in 2 out of 43 cases (4,7%) of aneurysm surgery, which could not have been visualized by ICG angiography before. In arterio-venous-malformation (AVM) surgery, one of 11 examined patients (7,7%) showed a remnant in ioDSA and resulted in additional resection. The average cost of an ioDSA in Ulm University can be estimated with 1928,00€.
    CONCLUSIONS: According to our results ioDSA associated complications are low. Relevant findings in ioDSA can potentially avoid additional intervention, however, due to the high costs and lower availability, the main advantage might lie in the treatment of selected patients with complexes neurovascular pathologies since ICG angiography is equally safe but associated with lower costs and better availability.
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  • 文章类型: Journal Article
    背景:人工智能(AI)最近在包括医疗应用在内的不同领域取得了相当大的成功。尽管目前的进展预计会影响手术,到目前为止,由于该领域特有的几个挑战,人工智能还没有能够充分发挥其潜力。
    结论:这篇综述总结了作为手术室中基于AI的不同辅助功能的先决条件所需的数据驱动方法和技术。人工智能在手术中的潜在影响将被强调,总结了为手术启用人工智能的持续挑战。
    结论:AI辅助手术将通过决策支持系统和认知机器人辅助实现数据驱动的决策。使用AI进行工作流分析将有助于在正确的环境中提供适当的帮助。这种援助的要求必须由外科医生与计算机科学家和工程师密切合作来定义。一旦现有的挑战得到解决,人工智能辅助有可能通过支持外科医生而不更换他或她来改善患者护理。
    BACKGROUND: Artificial intelligence (AI) has recently achieved considerable success in different domains including medical applications. Although current advances are expected to impact surgery, up until now AI has not been able to leverage its full potential due to several challenges that are specific to that field.
    CONCLUSIONS: This review summarizes data-driven methods and technologies needed as a prerequisite for different AI-based assistance functions in the operating room. Potential effects of AI usage in surgery will be highlighted, concluding with ongoing challenges to enabling AI for surgery.
    CONCLUSIONS: AI-assisted surgery will enable data-driven decision-making via decision support systems and cognitive robotic assistance. The use of AI for workflow analysis will help provide appropriate assistance in the right context. The requirements for such assistance must be defined by surgeons in close cooperation with computer scientists and engineers. Once the existing challenges will have been solved, AI assistance has the potential to improve patient care by supporting the surgeon without replacing him or her.
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