transmissibility

传递性
  • 文章类型: Journal Article
    水平轴风力涡轮机叶片上的缺陷由于叶片尺寸大且在连续运行期间的可接近性有限,难以用常规形式的无损检测来识别和监测。本文研究了应变和加速度传递率作为风力涡轮机叶片连续损伤检测的方法。首先设计了一个缩放的117厘米的海上风力涡轮机叶片,3D打印,并在ANSYS中进行数值建模。沿叶片前缘以10cm的间隔有意地将横向裂纹引入叶片。随后传播性的变化,相对于未损坏的基线模型,在叶片的前三个固有频率下使用不同的变量组合进行了测量。实验结果表明,应变传递率能够使用第一自然振动频率的振幅在距叶片轮毂70-110cm的范围内定位1.0cm的缺陷。数值模型能够模拟应变实验结果,并被确定为未来的缺陷表征有效。加速度传输率无法通过实验识别尺寸为1.0cm及以下的缺陷,但能够通过数值识别1.0cm尺寸的缺陷。结论是,对于叶片上的连续损伤检测,传输率是可行的,但是在进行全面测试之前,需要进一步研究其他缺陷类型和位置。
    Defects on horizontal axis wind turbine blades are difficult to identify and monitor with conventional forms of non-destructive examination due to the blade\'s large size and limited accessibility during continuous operation. This article examines both strain and acceleration transmissibility as methods of continuous damage detection on wind turbine blades. A scaled 117 cm offshore wind turbine blade was first designed, 3D printed, and modelled numerically in ANSYS. Transverse cracks were deliberately introduced to the blade at 10 cm intervals along its leading edge. Subsequent changes in the transmissibility, relative to an undamaged baseline model, were measured using different variable combinations at the blade\'s first three natural frequencies. Experimental results indicated that strain transmissibility was able to locate a 1.0 cm defect at a range of 70-110 cm from the blade hub using the amplitudes of the first natural frequency of vibration. The numerical model was able to simulate the strain experimental results and was determined to be valid for future defect characterization. Acceleration transmissibility was unable to experimentally identify defects sized at 1.0 cm and below but was able to identify 1.0 cm sized defects numerically. It was concluded that transmissibility is viable for continuous damage detection on blades but that further research into other defect types and locations is required prior to conducting full-scale testing.
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  • 文章类型: Journal Article
    背景:我们分析了严重急性呼吸综合征冠状病毒2Omicron亚谱系BA.1,BA的传染性和传播性之间的相关性。2、BA.4和BA.5。
    方法:我们在细胞水平上评估了病毒复制动力学和感染性。鼻咽和口咽标本取自2019年冠状病毒病患者,使用全基因组测序证实是由Omicron亚谱系BA.1、BA.2、BA.4或BA.5引起的。这些标本用于感染VeroE6细胞,来源于猴子的肾脏,用于病毒分离的目的。然后以0.01的感染复数在VeroE6细胞中传代病毒储备物,并以12小时间隔收获培养上清液72小时。为了评估病毒复制动力学,我们使用实时逆转录聚合酶链反应确定了上清液的循环阈值,并将这些值转换为基因组拷贝数.
    结果:BA.2、BA.4和BA.5之间的病毒载量相当,而BA.1表现出较低的值。BA4的峰值感染负荷比BA.2和BA.5低约3倍,而BA.2和BA.5的峰值负荷比BA高约7倍。值得注意的是,BA.1在整个研究期间表现出最低的感染性。
    结论:我们的结果表明,与其他Omicron亚谱系相比,BA.5的病毒复制和感染性更高,可能已经放大了全球BA.5波。这些分析可以支持快速评估新变异对病例发生率的影响。
    BACKGROUND: We analyzed the correlation between the infectivity and transmissibility of the severe acute respiratory syndrome coronavirus 2 Omicron sublineages BA.1, BA. 2, BA.4, and BA.5.
    METHODS: We assessed viral replication kinetics and infectivity at the cellular level. Nasopharyngeal and oropharyngeal specimens were obtained from patients with coronavirus disease 2019, confirmed using whole-genome sequencing to be caused by the Omicron sublineages BA.1, BA.2, BA.4, or BA.5. These specimens were used to infect Vero E6 cells, derived from monkey kidneys, for the purpose of viral isolation. Viral stocks were then passaged in Vero E6 cells at a multiplicity of infection of 0.01, and culture supernatants were harvested at 12-hour intervals for 72 hours. To evaluate viral replication kinetics, we determined the cycle threshold values of the supernatants using real-time reverse transcription polymerase chain reaction and converted these values to genome copy numbers.
    RESULTS: The viral load was comparable between BA.2, BA.4, and BA.5, whereas BA.1 exhibited a lower value. The peak infectious load of BA.4 was approximately 3 times lower than that of BA.2 and BA.5, while the peak load of BA.2 and BA.5 was about 7 times higher than that of BA.1. Notably, BA.1 demonstrated the lowest infectivity over the entire study period.
    CONCLUSIONS: Our results suggest that the global BA.5 wave may have been amplified by the higher viral replication and infectivity of BA.5 compared to other Omicron sublineages. These analyses could support the rapid assessment of the impact of novel variants on case incidence.
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  • 文章类型: Journal Article
    许多病原体进化是为了逃避免疫,然而,仍然很难预测免疫压力是否会导致多元化,将一个变体连续替换为另一个变体,或者更复杂的模式。病原体菌株动力学是由交叉保护性免疫介导的,因此,暴露于一种菌株可以部分防止抗原发散菌株的感染。越来越多的证据表明,这种保护受到早期暴露的影响,一种被称为原始抗原罪(OAS)或印记的现象。在本文中,我们得出了对流感所证明的连续菌株替代模式出现的约束,SARS-CoV-2季节性冠状病毒,和其他病原体。我们发现,OAS意味着,只有[公式:参见正文]小于由交叉保护和创建新免疫记忆的特征性抗原距离设定的阈值,才能保持连续菌株替换发现的有限多样性。这种界限意味着新菌株的进化存在“速度限制”,并且在任何时候感染菌株在抗原空间中的分布变化最小。为了进行这种分析,我们开发了抗原空间中病原体进化的理论模型,该模型通过解耦保护免受感染和菌株特异性记忆创建所需的抗原距离来实现OAS.我们的结果表明,OAS可以在宿主免疫动力学菌株结构的出现中发挥不可或缺的作用,防止高度传染性病原体保持连续菌株替代而不多样化。
    Many pathogens evolve to escape immunity, yet it remains difficult to predict whether immune pressure will lead to diversification, serial replacement of one variant by another, or more complex patterns. Pathogen strain dynamics are mediated by cross-protective immunity, whereby exposure to one strain partially protects against infection by antigenically diverged strains. There is growing evidence that this protection is influenced by early exposures, a phenomenon referred to as original antigenic sin (OAS) or imprinting. In this paper, we derive constraints on the emergence of the pattern of successive strain replacements demonstrated by influenza, SARS-CoV-2, seasonal coronaviruses, and other pathogens. We find that OAS implies that the limited diversity found with successive strain replacement can only be maintained if [Formula: see text] is less than a threshold set by the characteristic antigenic distances for cross-protection and for the creation of new immune memory. This bound implies a \"speed limit\" on the evolution of new strains and a minimum variance of the distribution of infecting strains in antigenic space at any time. To carry out this analysis, we develop a theoretical model of pathogen evolution in antigenic space that implements OAS by decoupling the antigenic distances required for protection from infection and strain-specific memory creation. Our results demonstrate that OAS can play an integral role in the emergence of strain structure from host immune dynamics, preventing highly transmissible pathogens from maintaining serial strain replacement without diversification.
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  • 文章类型: Journal Article
    欧洲各国都面临着类似的SARS-CoV-2变种的演变,包括阿尔法,Delta,和Omicron变体。
    我们使用了来自GISAID的数据,自动数学替代模型,以研究超过2年的欧洲COVID-19变体的动态,从2020年底到2023年初。该模型识别了变体替代模式,并区分了残差行为和显性行为。我们使用来自19个欧洲国家的每周测序数据来估计连续SARS-CoV-2变体之间的传播性(Δβ)的增加。此外,我们专注于具有独立区域爆发和多个竞争变种的复杂情景的大国。
    我们的模型准确地再现了观察到的Alpha之间的替代模式,Delta,和Omicron主要变体。我们估计了每日变异患病率,并计算了变异之间的Δβ,揭示:(i)Δβ从Alpha到Omicron变体逐渐增加;(ii)Δβ在Omicron变体中显示出高度的变异性;(iii)较高的Δβ与该变体在一个国家内的较晚出现有关;(iv)人群针对先前变体的较高免疫程度与Delta变体的较高Δβ有关;(v)较大的国家表现出较小的βΔ,建议同一国家内区域不同的疫情;最后(VI)该模型可靠地捕获了竞争变种的动态,即使在复杂的场景中。
    使用数学模型可以对每个变体的每日病例进行精确可靠的估计。通过量化Δβ,我们追踪了不同变体在欧洲的传播,突出了从Alpha到Omicron的传播性趋势的强劲增长。此外,我们已经表明,一个国家的地理特征,以及新的变体入口的时间,可以解释各国在变体替代动态方面观察到的一些差异。
    UNASSIGNED: Countries across Europe have faced similar evolutions of SARS-CoV-2 variants of concern, including the Alpha, Delta, and Omicron variants.
    UNASSIGNED: We used data from GISAID and applied a robust, automated mathematical substitution model to study the dynamics of COVID-19 variants in Europe over a period of more than 2 years, from late 2020 to early 2023. This model identifies variant substitution patterns and distinguishes between residual and dominant behavior. We used weekly sequencing data from 19 European countries to estimate the increase in transmissibility  ( Δ β )   between consecutive SARS-CoV-2 variants. In addition, we focused on large countries with separate regional outbreaks and complex scenarios of multiple competing variants.
    UNASSIGNED: Our model accurately reproduced the observed substitution patterns between the Alpha, Delta, and Omicron major variants. We estimated the daily variant prevalence and calculated Δ β between variants, revealing that: ( i ) Δ β increased progressively from the Alpha to the Omicron variant; ( i i ) Δ β showed a high degree of variability within Omicron variants; ( i i i ) a higher Δ β was associated with a later emergence of the variant within a country; ( i v ) a higher degree of immunization of the population against previous variants was associated with a higher Δ β for the Delta variant; ( v ) larger countries exhibited smaller Δ β ,  suggesting regionally diverse outbreaks within the same country; and finally ( v i ) the model reliably captures the dynamics of competing variants, even in complex scenarios.
    UNASSIGNED: The use of mathematical models allows for precise and reliable estimation of daily cases of each variant. By quantifying Δ β ,  we have tracked the spread of the different variants across Europe, highlighting a robust increase in transmissibility trend from Alpha to Omicron. Additionally, we have shown that the geographical characteristics of a country, as well as the timing of new variant entrances, can explain some of the observed differences in variant substitution dynamics across countries.
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  • 文章类型: Journal Article
    针脚中结核病的病原体是针脚分枝杆菌,结核分枝杆菌复合体(MTC)的成员。自然寄主是针脚;然而,其他非海洋哺乳动物,包括人类,也可以被感染。病原体的可传播性与其毒力有关。品氏M.pinnipedii菌株的可传播性(即,1856年)在小鼠模型中进行了研究,并与两种牛分枝杆菌菌株(即,534和04-303)具有不同的报告毒力。将未接种的小鼠(前哨)与气管内接种的小鼠共同饲养。对小鼠进行详细检查以在肺和脾脏中搜索可见的结核病变,并测定接种后30、60和90天(dpi)的芽孢杆菌活力。在30dpi时,与来自M.pinnipedii和M.bovis04-303组的接种小鼠共同饲养的前哨小鼠中记录到100%的传播率,从前哨小鼠的肺中恢复了活的品尼皮分枝杆菌和牛分枝杆菌。用M.pinnipedii(1856)和M.bovis(534)接种的小鼠存活直到安乐死,而5只接种牛分枝杆菌04-303的小鼠在17dpi时死亡。这项研究构成了M.pinnipedii品系在小鼠中的可传播性的第一份报告,并证实了该实验模型用于研究毒力特征,例如表征不佳的MTC物种的传播。
    The causative agent of tuberculosis in pinnipeds is Mycobacterium pinnipedii, a member of the Mycobacterium tuberculosis complex (MTC). The natural hosts are pinnipeds; however, other non-marine mammals, including humans, can also be infected. The transmissibility of a pathogen is related to its virulence. The transmissibility of a M. pinnipedii strain (i.e., 1856) was investigated in a murine model and compared with that of two Mycobacterium bovis strains (i.e., 534 and 04-303) with different reported virulence. Non-inoculated mice (sentinels) were co-housed with intratracheally inoculated mice. Detailed inspection of mice to search for visible tuberculosis lesions in the lungs and spleen was performed, and bacillus viability at 30, 60, and 90 days post-inoculation (dpi) was assayed. A transmissibility of 100% was recorded at 30 dpi in sentinel mice co-housed with the inoculated mice from the M. pinnipedii and M. bovis 04-303 groups, as evidenced by the recovery of viable M. pinnipedii and M. bovis from the lungs of sentinel mice. Mice inoculated with M. pinnipedii (1856) and M. bovis (534) survived until euthanized, whereas five of the M. bovis 04-303-inoculated mice died at 17 dpi. This study constitutes the first report of the transmissibility of a M. pinnipedii strain in mice and confirms the utility of this experimental model to study virulence features such as the transmission of poorly characterized MTC species.
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  • 文章类型: Journal Article
    肌肉骨骼生物力学模型在人体工程学中有着广泛的应用,康复,和伤害估计。它们的使用可以扩展到能够定量地解释和估计车辆乘客的乘坐舒适性。建立了矢状面上身的生物力学模型,这允许弯曲运动来模拟移动车辆上的就座乘客内的扰动能量的传播。模型的动态预测与文献中的实验结果进行了验证。频率响应表明,在车辆频率范围内,L4L5和L5S1椎间盘在下腰椎区域容易受到最高的振动传递。还发现,振动传递在约4.5Hz处最大化。该模型使用一些简单的几何假设为上身各个部分的运动提供了分析和几何直觉,并可用于开发定量的乘坐舒适性度量,这样最舒适的乘坐将是在乘客模型内引起最少内部运动的乘坐。
    Musculoskeletal biomechanical models have wide applications in ergonomics, rehabilitation, and injury estimation. Their use can be extended to enable quantitatively explaining and estimating ride comfort for a vehicle\'s passenger. A biomechanical model of the upper body in the sagittal plane is constructed, which allows for curved motion to simulate the propagation of disturbance energy within a seated passenger aboard a moving vehicle. The dynamic predictions of the model are validated against experimental results within the literature. Frequency responses show that within the vehicular frequency range, the L4L5 and the L5S1 discs in the lower lumbar region are susceptible to the highest vibration transmission. It was also found that vibration transmission is maximized at around 4.5 Hz. The model provides analytical and geometric intuition into the motion of the various segments of the upper body using a few simple geometric assumptions and can be employed to develop a quantitative ride-comfort metric, such that the most comfortable ride would be that which would induce the least internal motion within the passenger model.
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  • 文章类型: Journal Article
    COVID-19大流行,由严重急性呼吸道综合症冠状病毒2(SARS-CoV-2)引起,严重损害了全球经济和人类健康。冠状病毒的刺突(S)蛋白通过与宿主细胞受体结合在病毒进入中起关键作用。此外,它是感染者中和抗体的主要靶标,是目前使用或研究疫苗的中心焦点。在病毒适应人类宿主的过程中,SARS-CoV-2的S蛋白发生了显著的进化。随着COVID-19大流行的展开,新的突变已经出现并消失,在SARS-CoV-2的VOC菌株中产生独特的氨基酸谱。值得注意的是,S蛋白中的许多变化都是积极选择的,导致病毒特征的实质性改变,例如增强的可传播性和免疫逃避能力。这篇综述旨在概述我们目前对与SARS-CoV-2的S蛋白中关键氨基酸变化相关的结构含义的理解。这些研究结果揭示了病毒进化的复杂性和动态性,强调持续监测和分析病毒基因组的重要性。通过这些分子水平的研究,我们可以更深入地了解病毒的适应性进化,为设计疫苗和开发抗病毒药物以对抗不断变化的病毒威胁提供有价值的指导。
    The COVID-19 pandemic, caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has substantially damaged the global economy and human health. The spike (S) protein of coronaviruses plays a pivotal role in viral entry by binding to host cell receptors. Additionally, it acts as the primary target for neutralizing antibodies in those infected and is the central focus for currently utilized or researched vaccines. During the virus\'s adaptation to the human host, the S protein of SARS-CoV-2 has undergone significant evolution. As the COVID-19 pandemic has unfolded, new mutations have arisen and vanished, giving rise to distinctive amino acid profiles within variant of concern strains of SARS-CoV-2. Notably, many of these changes in the S protein have been positively selected, leading to substantial alterations in viral characteristics, such as heightened transmissibility and immune evasion capabilities. This review aims to provide an overview of our current understanding of the structural implications associated with key amino acid changes in the S protein of SARS-CoV-2. These research findings shed light on the intricate and dynamic nature of viral evolution, underscoring the importance of continuous monitoring and analysis of viral genomes. Through these molecular-level investigations, we can attain deeper insights into the virus\'s adaptive evolution, offering valuable guidance for designing vaccines and developing antiviral drugs to combat the ever-evolving viral threats.
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  • 文章类型: Journal Article
    识别和管理患有活动性或慢性疾病的个人,实施适当的感染控制措施,减轻COVID-19大流行的传播突显了对传染性测试的必要性。评估感染性的金标准是细胞培养物中感染性病毒的恢复。使用循环阈值,抗原检测,和SARS-CoV-2,复制中间链用于评估传染性,有许多限制。传染性可受宿主因素的影响(例如,预先存在的免疫反应)和病毒因素(例如,evolution).
    Identifying and managing individuals with active or chronic disease, implementing appropriate infection control measures, and mitigating the spread of the COVID-19 pandemic highlighted the need for tests of infectiousness. The gold standard for assessing infectiousness has been the recovery of infectious virus in cell culture. Using cycle threshold values, antigen testing, and SARS-CoV-2, replication intermediate strands were used to assess infectiousness, with many limitations. Infectiousness can be influenced by host factors (eg, preexisting immune responses) and virus factors (eg, evolution).
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  • 文章类型: Journal Article
    16名站立的男性参与者受到前后正弦振动的影响,其峰值幅度和频率在0.44-4.431ms-2和2-6Hz范围内,分别。前后,侧向和垂直传递到第一背椎骨(T1),第八背椎骨(T8),第十二背椎骨(T12),测量第四腰椎(L4)和头部。在所有位置的传播性中都观察到很大的参与者间差异。然而,在所有位置都确定了3-4.5Hz范围内的峰值,这意味着该频率范围内的全身共振。由于横向传递率显示出较低的值,因此在中矢状平面中发现了反应。低于4.5Hz,前后的可传递性随着上身从尾部到颅部的移动而增加。然而,在更高的频率,观察到相反的趋势。结果可用于开发模型,这些模型可能有助于了解振动如何影响健康和舒适度。
    Sixteen standing male participants were subjected to fore-and-aft sinusoidal vibration with peak magnitude and frequency in the range 0.44-4.431 ms-2 and 2-6 Hz, respectively. The fore-and-aft, lateral and vertical transmissibilities to the first dorsal vertebra (T1), eighth dorsal vertebra (T8), twelfth dorsal vertebra (T12), fourth lumbar vertebra (L4) and head were measured. Large inter-participant variability was observed in the transmissibilities at all locations. Nevertheless, peaks in the range 3-4.5 Hz were identified at all locations, implying a whole-body resonance in this frequency range. The response was found dominant in the mid-sagittal plane as the lateral transmissibility showed low values. Below 4.5 Hz, the fore-and-aft transmissibility increased with moving from caudal to cranial locations of the upper body. However, at higher frequencies, the opposite trend was observed. The results can be used for developing models that may help understand how vibration affects health and comfort.
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  • 文章类型: Journal Article
    在2020-2021年冬季,高致病性禽流感(HPAI)的爆发是由H5N8亚型病毒在日本广大地区的家禽中引起的。该病毒可分为五种基因型-E1,E2,E3,E5和E7。导致疫情爆发的主要基因型是E3,其次是E2。为了调查这些爆发的原因,我们用每种基因型的五种代表性菌株实验感染鸡。我们发现,在这5个菌株中,50%的鸡感染剂量相差75倍,E3菌株的滴度(102.7550%卵感染剂量(EID50))最低,其次是E2菌株(103.50EID50)。在病毒传播实验中,除了E3和E2菌株,E5菌株以高效率(>80%)传播给幼稚的鸡,而其他菌株的效率较低(<20%)。我们观察到在同一季节分离的五个菌株之间的病毒学特征有明显差异。E3和E2病毒在鸡中的较高感染性可能在这个季节期间在日本引起了大量的HPAI爆发。
    During the winter of 2020-2021, numerous outbreaks of high pathogenicity avian influenza (HPAI) were caused by viruses of the subtype H5N8 in poultry over a wide region in Japan. The virus can be divided into five genotypes-E1, E2, E3, E5, and E7. The major genotype responsible for the outbreaks was E3, followed by E2. To investigate the cause of these outbreaks, we experimentally infected chickens with five representative strains of each genotype. We found that the 50% chicken infectious dose differed by up to 75 times among the five strains, and the titer of the E3 strains (102.75 50% egg infectious dose (EID50)) was the lowest, followed by that of the E2 strains (103.50 EID50). In viral transmission experiments, in addition to the E3 and E2 strains, the E5 strain was transmitted to naïve chickens with high efficiency (>80%), whereas the other strains had low efficiencies (<20%). We observed a clear difference in the virological characteristics among the five strains isolated in the same season. The higher infectivity of the E3 and E2 viruses in chickens may have caused the large number of HPAI outbreaks in Japan during this season.
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