taxonomic revision

分类学修订
  • 文章类型: Journal Article
    背景:教派的系统地位。Tuberculata及其分类学最近引起了极大的关注。然而,定义教派特征的不同基础。Tuberculata导致该组植物之间存在许多分歧。金花茶和紫花茶一直是分类学争议的主题,并被视为同一物种的不同物种或品种。因此,重要的是使用多种方法,即,综合分类学,确定蓝花和紫花的分类地位。这是在形态学的基础上系统探索这两种植物的分类位置的第一个研究,解剖学,孢粉学和分子系统学。
    结果:广泛的样本评论和实地调查表明,马尾花和马尾花存在许多差异,例如树干的数量(严重剥蚀与轻微剥离),叶型(光滑薄革质,闪亮的vs.光滑皮革,晦涩或略带光泽),叶缘(整个与锯齿),花类型(无柄vs.无柄),样式数量(3-4与3),和萼片(卵形vs.圆)。此外,C.neriifolia具有更独特的淡黄色花朵颜色,和树干蜕皮在马尾花中比在马尾花中更为严重。此外,叶表皮的微观形态分析表明,这两个物种在背斜壁中存在差异,气孔装置,和气孔簇,和基于花粉大小的花粉形态分析,发芽沟,以及极轴和赤道轴表明它们彼此不同。基于整个叶绿体基因组构建的系统发育树的结果,蛋白质编码基因,ITS2结果表明,紫菜和紫菜都聚集在不同的分支中,并获得了较高的支持。
    结论:结果结合了形态学,解剖学,孢粉学,和分子系统学,以将蓝草和紫草都视为该教派中的独立物种。结核杆菌,物种名称继续像以前一样被使用。总之,阐明蓝花和紫花的分类地位加深了我们对教派系统分类的理解。结核杆菌.
    BACKGROUND: The systematic status of sect. Tuberculata and its taxonomy have recently attracted considerable attention. However, the different bases for defining the characteristics of sect. Tuberculata has led to many disagreements among the plants in this group. Camellia neriifolia and Camellia ilicifolia have been the subject of taxonomic controversy and have been treated as different species or varieties of the same species. Therefore, it is important to use multiple methods, i.e., integrative taxonomy, to determine the taxonomic status of C. neriifolia and C. ilicifolia. This is the first study to systematically explore the taxonomic position of these two plants on the basis of Morphology, Anatomy, Palynology and Molecular Systematics.
    RESULTS: Extensive specimen reviews and field surveys showed that many differences exist in C. neriifolia and C. ilicifolia, such as the number of trunk (heavily debarked vs. slightly peeling), leaf type (smooth thin leathery, shiny vs. smooth leathery, obscure or slightly shiny), leaf margin (entire vs. serrate), flower type (subsessile vs. sessile), number of styles (3-4 vs. 3), and sepal (ovate vs. round). Moreover, C. neriifolia has a more distinctive faint yellow flower color, and trunk molting was more severe in C. neriifolia than that in C. ilicifolia. In addition, micromorphological analysis of the leaf epidermis showed that the two species differed in the anticlinal wall, stomatal apparatus, and stomatal cluster, and pollen morphology analyses based on pollen size, germination furrow, and polar and equatorial axes showed that they are both distinct from each other. The results of the phylogenetic tree constructed based on the whole chloroplast genome, protein-coding genes, and ITS2 showed that both C. ilicifolia and C. neriifolia were clustered in different branches and gained high support.
    CONCLUSIONS: The results combine morphology, anatomy, palynology, and molecular systematics to treat both C. neriifolia and C. ilicifolia as separate species in the sect. Tuberculata, and the species names continue to be used as they were previously. In conclusion, clarifying the taxonomic status of C. neriifolia and C. ilicifolia deepens our understanding of the systematic classification of sect. Tuberculata.
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  • 文章类型: Journal Article
    SaniculaL.属是伞形科的一个分类学上复杂的类群,由于其形态的高度变异性。尽管分类学家对该属进行了几次分类学修订,种间关系和物种边界尚未得到令人满意的解决,尤其是中国特有的。本研究主要集中在S.giraldiivar。卵黄,S、铁门树。pauciflora,和S.orthacanthavar。stolonifera,还描述了该属的两个新成员。
    我们新测序了来自9个Sanicula物种的16个质体。结合我们以前报道的11个质体和一个下载的质体,我们对21个Sanicula分类群进行了全面的质体系统基因组学分析。
    比较结果表明,21个Sanicula塑性体的结构和特征高度保守,并进一步证明了两个新物种确实是Sanicula的成员。然而,仍鉴定出11个突变热点区域。基于质体数据和ITS序列的系统发育分析强烈支持这三个品种明显远离三个类型的品种。结果表明,这三个品种应被视为三个独立的物种,它们的多个形态特征进一步证明了这一点。因此,将这三个品种修改为三个独立的物种是合理和令人信服的。此外,我们还确定并描述了两种新的Sanicula物种(S.来自四川和山西的汉源和兰氏),中国,分别。根据其独特的形态特征和分子系统发育分析,Sanicula包括两个新物种。总之,我们的研究推动了Sanicula成员的修订,并改善了该属的分类系统。
    UNASSIGNED: The genus Sanicula L. is a taxonomically complicated taxa within Apiaceae, as its high variability in morphology. Although taxonomists have performed several taxonomic revisions for this genus, the interspecific relationships and species boundaries have not been satisfactorily resolved, especially for those endemic to China. This study mainly focused on S. giraldii var. ovicalycina, S. tienmuensis var. pauciflora, and S. orthacantha var. stolonifera and also described two new members of the genus.
    UNASSIGNED: We newly sequenced sixteen plastomes from nine Sanicula species. Combined with eleven plastomes previously reported by us and one plastome downloaded, we performed a comprehensively plastid phylogenomics analysis of 21 Sanicula taxa.
    UNASSIGNED: The comparative results showed that 21 Sanicula plastomes in their structure and features were highly conserved and further justified that two new species were indeed members of Sanicula. Nevertheless, eleven mutation hotspot regions were still identified. Phylogenetic analyses based on plastome data and the ITS sequences strongly supported that these three varieties were clearly distant from three type varieties. The results implied that these three varieties should be considered as three independent species, which were further justified by their multiple morphological characters. Therefore, revising these three varieties into three independent species was reasonable and convincing. Moreover, we also identified and described two new Sanicula species (S. hanyuanensis and S. langaoensis) from Sichuan and Shanxi, China, respectively. Based on their distinct morphological characteristics and molecular phylogenetic analysis, two new species were included in Sanicula. In summary, our study impelled the revisions of Sanicula members and improved the taxonomic system of the genus.
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  • 文章类型: Journal Article
    线粒体基因组提供实用的遗传标记来重建进化关系并告知分类学分类。这里,我们提供了四种中国侏儒蝗虫(Tetrigidae)的完整线粒体序列,旨在重新评估系统发育模式和形态分类学。我们的17,643个基点,16,274个基点,15,086bp,和15,398bp的广源丝裂原,黄山长子,鼻窦和正氏系统,分别,表现出原型的Tetrigidae体系结构。我们使用来自39个Tetrigidae有丝分裂基因组的13个蛋白质编码基因座构建了系统发育,揭示了几个属级别的集群,具有统计上坚实的支持,关于Ex的冲突。广西,F.龙王山合并成Tetrix,和系统的两个分支。过时的差异分析表明,超过150个Tetrigidae祖先的Mya,追踪Systolederus通用组分裂到约7500万年前。此外,Tetrix通用组辐射超过14个Mya,分布广泛,与快速适应性分散一致。我们的线粒体重建表明,Synstolederus在分类学上被过度扩展为单个属,而Ex的独特性。来自Tetrix的广西和龙王山似乎值得怀疑,和Tetrix通用组包含潜在的tRNA-Ile编码区。我们的综合有丝分裂基因组学方法将有助于解决来自形态学分类学的问题,这些问题依赖于容易收敛的性状。这项研究增强了对Tetrigidae系统发育的理解,并强调了分子系统学。
    Mitochondrial genomes offer pragmatic genetic markers to reconstruct evolutionary relationships and inform taxonomic classifications. Here, we present complete mitochondrial sequences for four Chinese pygmy grasshoppers (Tetrigidae), aiming to reevaluate phylogenetic patterns and morphological taxonomy. Our 17,643 bp, 16,274 bp, 15,086 bp, and 15,398 bp mitogenomes of Exothotettix guangxiensis, Formosatettix longwangshanensis, Euparatettix sinufemoralis and Systolederus zhengi, respectively, exhibit archetypal Tetrigidae architecture. We constructed phylogenies using 13 protein-coding loci from 39 Tetrigidae mitogenomes, revealing several genus-level clusters with statistically solid support, conflicts regarding Ex. guangxiensis, F. longwangshanensis merging into Tetrix, and two subclades of Systolederus. The dated divergence analysis indicates over 150 Mya of Tetrigidae ancestry, tracing the Systolederus generic group splits up to ~75 million years ago. Moreover, the Tetrix generic group radiated over 14 Mya across vast distributions, consistent with rapid adaptive dispersals. Our mitochondrial reconstructions suggest that Synstolederus is taxonomically overextended for a single genus, while the distinctiveness of Ex. guangxiensis and F. longwangshanensis from Tetrix appears questionable, and the Tetrix generic group comprises a potential tRNA-Ile coding region. Our integrative mitogenomic approaches will help resolve issues stemming from morphological taxonomy that is reliant on traits that are prone to convergence. This investigation enhances comprehension of Tetrigidae phylogeny and accentuates molecular systematics.
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  • 文章类型: Journal Article
    对Brotherus在1916年描述的Praagiotheciumnovae-seelandiae的原始集合进行的重新检查表明,这种材料是不均匀的。重新检查该物种的诊断和形态学分析支持应区分两个单独的分类单元-Pagiotheciumnovae-seelandiaevar。novae-seelandiae和P.novae-seelandiaevar。Brotherivar.11月。此外,与Hypnumlamprostachys(=P.lamprostachys)的原始集合的比较显示出差异,支持他们作为独立分类群的治疗。来自大洋洲的疟原虫属的修订(CANB,CHR,HO,MEL,WELT)和世界上这一部分描述的其他物种的类型(P。funale和P.lucidum)得到他们诊断研究的支持,定性和定量特征以及数学分析(PCA,HCA)允许将检查的材料分为六个单独的组-六个单独的分类单元。因此,提出了三个不同的分类单元-P.coratumsp。11月。,P.semimortuumsp.11月。,和P.semimortuumvar.Macquariensevar.11月。上面提到的所有分类单元都有详细描述,他们目前已知的分布和生态偏好也包括在内。此外,说明它们最重要的分类学特征的图像,以及区分单个分类单元的原始密钥。
    A re-examination of the original collection of Plagiotheciumnovae-seelandiae described by Brotherus in 1916 indicated that this material is not homogeneous. Re-examination of the diagnosis of this species and morphological analysis supports that two separate taxa should be distinguished - Plagiotheciumnovae-seelandiaevar.novae-seelandiae and P.novae-seelandiaevar.brotherivar. nov. Also, comparisons with the original collection of Hypnumlamprostachys (= P.lamprostachys) showed differences, which supported their treatment as separate taxa. Revision of the genus Plagiothecium from Australasia (CANB, CHR, HO, MEL, WELT) and types of other species described from this part of the world (P.funale and P.lucidum) supported by the study of their diagnoses, qualitative and quantitative characteristics as well as mathematical analyses (PCA, HCA) allowed the division of the examined material into six separate groups - six separate taxa. Thereby, three distinct taxa are proposed - P.cordatumsp. nov., P.semimortuumsp. nov., and P.semimortuumvar.macquariensevar. nov. All taxa mentioned above are described in detail, their current known distribution and ecological preferences are also included. In addition, images illustrating their most important taxonomic features, as well as an original key to distinguish individual taxa are presented.
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  • 文章类型: Journal Article
    背景:当归L.sensulato是一个分类复杂的属,许多研究利用形态和分子特征来解决其分类问题。在台湾,安杰丽卡内有六个类群,和他们的分类处理一直是一个有争议的话题。在这项研究中,我们进行了结合形态学和分子(cpDNA和nrDNA)特征的综合分析,以修改台湾当归的分类学处理。
    结果:作为我们研究的结果,我们修改了A.dahuricavar之间的分类。formosana和A.pubescens并将A.morrisonicola的两个变种合并为一个分类单元。一个新的分类单元,A.aliensis,已被确定并发现与塔罗克有着密切的关系。根据形态和分子特征数据,已经确定前三个类群应该归入欧亚当归进化枝,而其余四个类群应该属于沿海当归进化枝。此外,分布在较高海拔地区的台湾当归物种表现出更高的遗传多样性,这意味着台湾中部山脉是植物生物多样性的重要水库。遗传漂移,如瓶颈,已被确定为导致大多数当归物种种群遗传多样性固定或减少的潜在因素。我们提供分类单元的钥匙,概要,物候学,以及台湾每个分类单元的分配。
    结论:我们对形态和分子特征的综合分析揭示了台湾当归的分类复杂性,解决分类学问题,并为台湾当归的系统发育关系提供有价值的见解。
    BACKGROUND: Angelica L. sensu lato is a taxonomically complex genus, and many studies have utilized morphological and molecular features to resolve its classification issues. In Taiwan, there are six taxa within Angelica, and their taxonomic treatments have been a subject of controversy. In this study, we conducted a comprehensive analysis incorporating morphological and molecular (cpDNA and nrDNA) characteristics to revise the taxonomic treatments of Angelica in Taiwan.
    RESULTS: As a result of our research, we have revised the classification between A. dahurica var. formosana and A. pubescens and merged two varieties of A. morrisonicola into a single taxon. A new taxon, A. aliensis, has been identified and found to share a close relationship with A. tarokoensis. Based on the morphological and molecular characteristics data, it has been determined that the former three taxa should be grouped into the Eurasian Angelica clade, while the remaining four taxa should belong to the littoral Angelica clade. Furthermore, Angelica species in Taiwan distributed at higher altitudes displayed higher genetic diversity, implying that the central mountain range of Taiwan serves as a significant reservoir of plant biodiversity. Genetic drift, such as bottlenecks, has been identified as a potential factor leading to the fixation or reduction of genetic diversity of populations in most Angelica species. We provide key to taxa, synopsis, phenology, and distribution for each taxon of Taiwan.
    CONCLUSIONS: Our comprehensive analysis of morphological and molecular features has shed light on the taxonomic complexities within Angelica in Taiwan, resolving taxonomic issues and providing valuable insights into the phylogenetic relationships of Angelica in Taiwan.
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  • 文章类型: Journal Article
    当前的研究调查了南非Marphysa的最终未解决的世界性物种,MarphysaCorallina,从夸祖鲁纳塔尔省收集,东部和西开普省,与从夸祖鲁纳塔尔省北部收集的另一种物种一起。形态学和遗传学数据证明M.corallina,最初来自夏威夷,不发生在南非。上颌骨I上内底的曲率,上颌骨II的升高的内基部,腹侧卷云作为一个带有圆形尖端的横向贴边,使我们能够将其识别为Treadwellphysa的新物种,T.izinqasp.11月。(俗称:棕色仙虫)。特征特征包括针状下钩的基底带红色和远端金色,耳形的后叶,和三齿镰刀属首次报道。该物种在SA的南海岸作为诱饵收获,虽然比更常见的血仙虫频率低,MarphysahaemasonaQuatrefages,1866年,可以通过其更均匀的棕色颜色和白色的触角来区分。第二个物种,Marphysamzingaziasp.11月。,以红色的眼睛为特征,六个分支细丝延伸到后端,后古人类的金色针叶,弱二齿黄色/棕色针状钩,和身体上有类似大小的尖晶石。基于细胞色素氧化酶I片段的分子分析证实了两个类群是不同的物种。包括所有南非Marphysa物种的钥匙。
    The current study investigates the final unresolved cosmopolitan species of Marphysa in South Africa, Marphysa corallina, collected from KwaZulu Natal, Eastern and Western Cape provinces, together with another species collected from northern KwaZulu Natal. Morphological and genetic data prove that M. corallina, originally described from Hawaii, does not occur in South Africa. The curvature of the inner base on maxilla I, the elevated inner base of maxilla II, and the ventral cirrus as a transverse welt with a rounded tip allow us to identify it as a new species of Treadwellphysa, T. izinqa sp. nov. (common name: brown wonderworm). Characteristic traits include the basal reddish and distal golden colour of the subacicular hook, the ear-shaped postchaetal lobe, and tridentate falcigers which is reported for the first time for the genus. This species is harvested as bait on the south coast of SA, although less frequently than the more common blood wonderworm, Marphysa haemasona Quatrefages, 1866, and can be distinguished by its more uniform brown colouration and white-tipped antennae. A second species, Marphysa mzingazia sp. nov., is characterized by red eyes, six branchial filaments extending to the posterior end, the golden aciculae in posterior chaetigers, weakly bidentate yellow/brown subacicular hooks, and the presence of similar sized spinigers along the body. A molecular analysis based on cytochrome oxidase I fragments confirm both taxa as different species. A key for all South African species of Marphysa is included.
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  • 文章类型: Journal Article
    半球形异系人与山竹属植物相关,1934年(StomachicolaYamaguti属的类型物种,1934年)是从伊朗波斯湾附近的daggertoothpikepikecongerMuraenesoxcinereus(Forsskäl)的胃中收集的。本研究旨在提供一个详细的描述。muraenesocis,包括测量,插图和扫描电子显微镜(s.e.m.)表示。与原始描述和先前描述的比较显示了几种特征的形态和度量变化(即身体大小和形状,生殖器官的排列,躯体与子宫内膜长度比,生殖器开口的位置,卵黄小管的数量和子宫线圈的延伸)。muraenesocis来自不同的主机和地区。这项研究提供了与Stom的小(18S)和大(28S)亚基核核糖体RNA基因(rDNA)相关的第一个分子序列数据。Muraenesocis.18S数据集的系统发育分析放置了Stom。muraenesocis是由一组LecithasterLühe物种组成的进化枝的姐妹血统,1901年(LecithasteridaeOdhner,1905).相比之下,基于28S的系统发育分析始终恢复了Stom之间的姐妹关系。muraenesocis和半尿科Looss的代表,1899.根据Hemiuridae和Lecithasteridae的形态和分类学历史,需要进一步进行基于系统发育的综合分类,以推断Stomachicola的系统发育亲和力和历史生物地理学。先前报道的Stomachicola物种及其相关宿主的完整列表,提供了位置和形态测量数据。
    Hemiurid digeneans conspecific with Stomachicola muraenesocis Yamaguti, 1934 (the type species of the genus Stomachicola Yamaguti, 1934) were collected from the stomach of the daggertooth pike conger Muraenesox cinereus (Forsskål) off the Persian Gulf of Iran. This study aimed to provide a detailed characterization of Stom. muraenesocis, including measurements, illustrations and scanning electron microscopy (s.e.m.) representations. Comparisons with the original and previous descriptions revealed morphological and metrical variations in several features (i.e. body size and shape, arrangement of reproductive organs, soma to ecsoma length ratio, position of genital opening, number of vitelline tubules and extension of uterine coils) between Stom. muraenesocis from different hosts and localities. This study presents the first molecular sequence data associated with the small (18S) and large (28S) subunit nuclear ribosomal RNA genes (rDNA) for Stom. muraenesocis. Phylogenetic analyses of the 18S dataset placed Stom. muraenesocis as sister lineage to a clade formed of a group of species of Lecithaster Lühe, 1901 (Lecithasteridae Odhner, 1905). In contrast, phylogenetic analyses based on the 28S consistently recovered a sister relationship between Stom. muraenesocis and representatives of the Hemiuridae Looss, 1899. Further comprehensive phylogenetically based classification in light of morphology and taxonomic history of the Hemiuridae and Lecithasteridae is required to infer phylogenetic affinities and historical biogeography of Stomachicola. A comprehensive list of previously reported species of Stomachicola together with their associated hosts, localities and morphometric data is provided.
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  • 文章类型: Journal Article
    在这里,我们介绍了阿尔泰山(AM)中Festuca属的更新清单。该研究是在丰富的植物标本室材料上进行的,并考虑了最新发表的系统发育分析。Festuca在细叶组(进化枝)的范围内进行了修改,分为两个部分,sect.Aulaxyper和教派。Festuca.两个物种,即F.richardsonii和F.lenensis,先前被错误识别,并且不存在于AM中。Festucabrevissima是AM的俄罗斯部分和蒙古植物区系的新纪录。总的来说,我们的修订版显示,AM地区存在17种细叶鱼科。在本文中,我们为物种识别提供了一把钥匙,以及植物的插图,习惯,叶子,小穗,和glums.有关术语类型的信息,同义词,开花期,染色体数,栖息地,包括AM中特定物种的一般分布和分布图。
    Here we present an updated checklist of the genus Festuca in the Altai Mountains (AM). The study was carried out on the abundant herbarium material and considered the latest published phylogenetic analyses. Festuca was revised within the scope of the fine-leaved group (clade) with two sections, sect. Aulaxyper and sect. Festuca. Two species, namely F.richardsonii and F.lenensis, were previously misidentified and are not present in the AM. Festucabrevissima is a new record for the Russian part of the AM and for the flora of Mongolia. In total, our revision shows that 17 species of fine-leaved fescues are present in the area of AM. In this paper, we provide a key to species identification, as well as illustrations of plants, habits, leaves, spikelets, and glumes. Information on nomenclature types, synonymy, flowering period, chromosome numbers, habitats, and general distribution along with distribution maps of the particular species within the AM are included.
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  • 文章类型: Journal Article
    物种定界是一种强大的方法,可以帮助在难以建立物种边界的挑战分类单元中进行分类决策。盲mole鼠(Nannospalax属)的欧洲分类单元在浅层进化差异水平上表现出微小的形态差异和复杂的染色体进化。先前的分析导致在其分布区域中识别出25种“表格”。我们提供了一个全面的框架,以提高对进化史的了解,并根据25种形式中的三种以外的所有样本修改欧洲盲mole鼠的分类法。我们使用基于串联和合并的物种树估计,对两个核编码的遗传区域和整个线粒体细胞色素b基因进行了测序,以进行系统发育树重建。系统发育分析证实,爱琴海N.insularis属于N.超物种黄体,它代表了欧洲这个超级物种的第二个已知物种。大陆分类群从小亚细亚到达欧洲,发生了两次定殖事件,分别对应于两个超物种级分类群:N.超物种monticola(据此建立的分类群)到达欧洲c。210万年前(Mya),随后是N.超物种leucodon(在此重新定义)c。1.5Mya。物种的定界使上述超物种的分类学含量得以澄清。N.超物种monticola包含三个物种,地理上局限于盲鼠鼠分布的西部边缘,而N.超物种白云更特别,有6个物种和几个额外的亚种。观察到的地理模式暗示了强大的周边物种形成过程和快速的染色体进化。因此,本处理被认为是每个谱系的最低分类含量,可以根据其他信息来源如核学特征进一步完善,杂交实验,等。物种定界模型还允许识别来自阿尔巴尼亚的迄今未命名的盲mole鼠分类群,这里描述为一个新的亚种。
    Species delimitation is a powerful approach to assist taxonomic decisions in challenging taxa where species boundaries are hard to establish. European taxa of the blind mole rats (genus Nannospalax) display small morphological differences and complex chromosomal evolution at a shallow evolutionary divergence level. Previous analyses led to the recognition of 25 \'forms\' in their distribution area. We provide a comprehensive framework to improve knowledge on the evolutionary history and revise the taxonomy of European blind mole rats based on samples from all but three of the 25 forms. We sequenced two nuclear-encoded genetic regions and the whole mitochondrial cytochrome b gene for phylogenetic tree reconstructions using concatenation and coalescence-based species-tree estimations. The phylogenetic analyses confirmed that Aegean N. insularis belongs to N. superspecies xanthodon, and that it represents the second known species of this superspecies in Europe. Mainland taxa reached Europe from Asia Minor in two colonisation events corresponding to two superspecies-level taxa: N. superspecies monticola (taxon established herewith) reached Europe c. 2.1 million years ago (Mya) and was followed by N. superspecies leucodon (re-defined herewith) c. 1.5 Mya. Species delimitation allowed the clarification of the taxonomic contents of the above superspecies. N. superspecies monticola contains three species geographically confined to the western periphery of the distribution of blind mole rats, whereas N. superspecies leucodon is more speciose with six species and several additional subspecies. The observed geographic pattern hints at a robust peripatric speciation process and rapid chromosomal evolution. The present treatment is thus regarded as the minimum taxonomic content of each lineage, which can be further refined based on other sources of information such as karyological traits, crossbreeding experiments, etc. The species delimitation models also allowed the recognition of a hitherto unnamed blind mole rat taxon from Albania, described here as a new subspecies.
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  • 文章类型: Journal Article
    更新世冰川对温带生态系统中物种的空间分布和遗传构成产生了深远的影响。虽然冰川期将几种物种困在冰川避难所中,并导致大量种群突然减少,间冰期促进了人口的增长和范围的扩大,从而导致了同种异体物种的形成。这里,我们分析了4种伊比克斯的40个基因组,发现帕米尔山脉的喜马拉雅伊比克斯在根据更新世物种泵概念从其主要范围约0.1mya分裂后独立进化。人口轨迹显示喜马拉雅地区的高地羊经历了两个历史性的瓶颈,每个c。0.8-0.5mya和c。50-30kya,具有中等的大量人口扩张c。0.2-0.16mya与中更新世过渡相吻合。我们通过多维证据证实,喜马拉雅地区的伊比克星是西伯利亚伊比克星的一种进化独特的系统发育物种,需要优先考虑喜马拉雅的Caprahimalayensis,以便在区域和全球范围内进行分类学修订和保护计划。
    Pleistocene glaciations had profound impact on the spatial distribution and genetic makeup of species in temperate ecosystems. While the glacial period trapped several species into glacial refugia and caused abrupt decline in large populations, the interglacial period facilitated population growth and range expansion leading to allopatric speciation. Here, we analyzed 40 genomes of four species of ibex and found that Himalayan ibex in the Pamir Mountains evolved independently after splitting from its main range about 0.1 mya following the Pleistocene species pump concept. Demographic trajectories showed Himalayan ibex experienced two historic bottlenecks, one each c. 0.8-0.5 mya and c. 50-30 kya, with an intermediate large population expansion c. 0.2-0.16 mya coinciding with Mid-Pleistocene Transitions. We substantiate with multi-dimensional evidence that Himalayan ibex is an evolutionary distinct phylogenetic species of Siberian ibex which need to be prioritized as Capra himalayensis for taxonomic revision and conservation planning at a regional and global scale.
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