target-based structure discovery

  • 文章类型: Journal Article
    在全世界最常见的恶性肿瘤中,头颈部鳞状细胞癌(HNSCC)的特点是发病率和死亡率高。标准治疗方式的失败,比如手术,放射治疗,和化疗,需要深入了解与治疗抗性发展有关的复杂信号网络。肿瘤的侵袭性生长和高水平的内在或获得性治疗抗性是治疗失败的主要原因。这可能是HNSCC的癌症干细胞的存在的结果,已知它们具有自我更新能力,导致治疗抗性。使用生物信息学方法,我们发现MET的表达升高,STAT3和AKT与HNSCC患者总体生存率低相关。然后,我们评估了我们新合成的小分子HNC018作为新型抗癌药物的潜力。我们的计算机辅助结构表征和靶标鉴定研究预测,HNC018可以靶向这些与HNSCC有关的致癌标记。随后,HNC018已证明其对头颈部鳞状细胞癌细胞系的抗增殖和抗癌活性,随着对MET表现出更强的结合亲和力,STAT3和AKT比标准药物顺铂。克隆形成和肿瘤球体形成能力的降低显示了HNC018在降低致瘤性中的作用。重要的是,一项体内研究显示,在HNC018单独或联合顺铂治疗的异种移植小鼠模型中,肿瘤生长显著延迟.结合我们的发现,HNC018突出了药物样候选物的理想特性,可以被认为是治疗头颈部鳞状细胞癌的新型小分子。
    Amongst the most prevalent malignancies worldwide, head and neck squamous cell carcinoma (HNSCC) is characterized by high morbidity and mortality. The failure of standard treatment modalities, such as surgery, radiotherapy, and chemotherapy, demands the need for in-depth understanding of the complex signaling networks involved in the development of treatment resistance. A tumor\'s invasive growth and high levels of intrinsic or acquired treatment resistance are the primary causes of treatment failure. This may be a result of the presence of HNSCC\'s cancer stem cells, which are known to have self-renewing capabilities that result in therapeutic resistance. Using bioinformatics methods, we discovered that elevated expressions of MET, STAT3, and AKT were associated with poor overall survival in HNSCC patients. We then evaluated the therapeutic potential of our newly synthesized small molecule HNC018 towards its potential as a novel anticancer drug. Our computer-aided structure characterization and target identification study predicted that HNC018 could target these oncogenic markers implicated in HNSCC. Subsequently, the HNC018 has demonstrated its anti-proliferative and anticancer activities towards the head and neck squamous cell carcinoma cell lines, along with displaying the stronger binding affinities towards the MET, STAT3, and AKT than the standard drug cisplatin. Reduction in the clonogenic and tumor-sphere-forming ability displays HNC018\'s role in decreasing the tumorigenicity. Importantly, an vivo study has shown a significant delay in tumor growth in HNC018 alone or in combination with cisplatin-treated xenograft mice model. Collectively with our findings, HNC018 highlights the desirable properties of a drug-like candidate and could be considered as a novel small molecule for treating head and neck squamous cell carcinoma.
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  • 文章类型: Journal Article
    卵巢癌通常在初始诊断时的晚期被检测到。由于其无症状性质,早期诊断困难,发现5年生存率不到30%。与该疾病的发病机制相关的潜在分子事件尚未完全阐明。因此,预后生物标志物的鉴定以及开发靶向这些标志物的新型治疗剂变得相关.在这里,我们确定了四个卵巢癌数据集(GSE14407,GSE18520,GSE26712,GSE54388)中常见的264个差异表达基因(DEGs),分别。我们与过表达的基因(72个基因)构建了蛋白质-蛋白质相互作用(PPI)相互作用网络,并进行了基因富集分析。在PPI网络中,三种蛋白质;TTK蛋白激酶(TTK),NIMA相关激酶2(NEK2),和细胞周期蛋白依赖性激酶(CDK1)具有更高的节点度被进一步评估为我们的新型多靶标小分子NSC777201的治疗靶标。我们发现上调的DEGs在KEGG和与卵巢癌进展相关的基因本体中富集,女性配子协会,耳囊泡发育,染色体分离的调节,和治疗失败。除了PPI网络,独创性途径分析也牵涉到TTK,NEK2和CDK1在卵巢癌中升高的补救嘧啶和吡哆醛途径中的作用。TTK,NEK2和CDK1过表达,表现出高频率的遗传改变,并且与卵巢癌队列的不良预后相关。有趣的是,NSC777201对卵巢癌细胞系的NCI面板表现出抗增殖和细胞毒性活性(GI50=1.6µM〜1.82µM和TGI50=3.5µM〜3.63µM),并表现出强大的相互作用,对TTK具有更强的亲和力,NEK2和CDK1,比标准药物,紫杉醇。NSC777201显示了药物样候选物的理想特性,因此可以被认为是治疗卵巢癌的新型小分子。
    Ovarian cancer is often detected at the advanced stages at the time of initial diagnosis. Early-stage diagnosis is difficult due to its asymptomatic nature, where less than 30% of 5-year survival has been noticed. The underlying molecular events associated with the disease\'s pathogenesis have yet to be fully elucidated. Thus, the identification of prognostic biomarkers as well as developing novel therapeutic agents for targeting these markers become relevant. Herein, we identified 264 differentially expressed genes (DEGs) common in four ovarian cancer datasets (GSE14407, GSE18520, GSE26712, GSE54388), respectively. We constructed a protein-protein interaction (PPI) interaction network with the overexpressed genes (72 genes) and performed gene enrichment analysis. In the PPI networks, three proteins; TTK Protein Kinase (TTK), NIMA Related Kinase 2 (NEK2), and cyclin-dependent kinase (CDK1) with higher node degrees were further evaluated as therapeutic targets for our novel multi-target small molecule NSC777201. We found that the upregulated DEGs were enriched in KEGG and gene ontologies associated with ovarian cancer progression, female gamete association, otic vesicle development, regulation of chromosome segregation, and therapeutic failure. In addition to the PPI network, ingenuity pathway analysis also implicate TTK, NEK2, and CDK1 in the elevated salvage pyrimidine and pyridoxal pathways in ovarian cancer. The TTK, NEK2, and CDK1 are over-expressed, demonstrating a high frequency of genetic alterations, and are associated with poor prognosis of ovarian cancer cohorts. Interestingly, NSC777201 demonstrated anti-proliferative and cytotoxic activities (GI50 = 1.6 µM~1.82 µM and TGI50 = 3.5 µM~3.63 µM) against the NCI panels of ovarian cancer cell lines and exhibited a robust interaction with stronger affinities for TTK, NEK2, and CDK1, than do the standard drug, paclitaxel. NSC777201 displayed desirable properties of a drug-like candidate and thus could be considered as a novel small molecule for treating ovarian carcinoma.
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