synthetic biosystems

合成生物系统
  • 文章类型: Journal Article
    生物和仿生膜基于脂质双层,由两个单层或小叶组成。为了避免双层边缘,当这种双层的疏水核心暴露于周围的水溶液时,一个双层封闭成单层囊泡,从而将内部与外部水性隔室分开。合成纳米囊泡,尺寸小于100纳米,传统上称为小单层囊泡,已经成为提供药物和疫苗的有效平台。相似大小的细胞纳米囊泡从几乎所有类型的活细胞中释放。已通过电子显微镜方法研究了纳米囊泡的形态,但这些方法仅限于每个囊泡的单个快照。这里,我们回顾了分子动力学模拟的最新结果,通过它可以监测和阐明单个双层和纳米囊泡的时空重塑。我们强调传单紧张的新概念,控制双层的稳定性和不稳定性,两个小叶之间的脂质触发器的转换率,纳米囊泡的形状转变,冷凝液滴和刚性纳米颗粒的吞噬和内吞作用,以及纳米囊泡的粘附和融合。为了实际计算传单的张力,必须确定双层的中间表面,其表示两个小叶之间的界面的平均位置。确定该中间表面的两种特别有用的方法是基于疏水性脂质链的密度分布和分子体积。
    Biological and biomimetic membranes are based on lipid bilayers, which consist of two monolayers or leaflets. To avoid bilayer edges, which form when the hydrophobic core of such a bilayer is exposed to the surrounding aqueous solution, a single bilayer closes up into a unilamellar vesicle, thereby separating an interior from an exterior aqueous compartment. Synthetic nanovesicles with a size below 100 nanometers, traditionally called small unilamellar vesicles, have emerged as potent platforms for the delivery of drugs and vaccines. Cellular nanovesicles of a similar size are released from almost every type of living cell. The nanovesicle morphology has been studied by electron microscopy methods but these methods are limited to a single snapshot of each vesicle. Here, we review recent results of molecular dynamics simulations, by which one can monitor and elucidate the spatio-temporal remodeling of individual bilayers and nanovesicles. We emphasize the new concept of leaflet tensions, which control the bilayers\' stability and instability, the transition rates of lipid flip-flops between the two leaflets, the shape transformations of nanovesicles, the engulfment and endocytosis of condensate droplets and rigid nanoparticles, as well as nanovesicle adhesion and fusion. To actually compute the leaflet tensions, one has to determine the bilayer\'s midsurface, which represents the average position of the interface between the two leaflets. Two particularly useful methods to determine this midsurface are based on the density profile of the hydrophobic lipid chains and on the molecular volumes.
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  • 文章类型: Journal Article
    在经历相分离成两个液相的大分子的水溶液中形成冷凝液滴。一个充分研究的例子是两种聚合物PEG和葡聚糖的溶液,它们已经在生化分析和生物技术中使用了很长时间。最近,在活细胞中也观察到相分离,它导致无膜或液滴样细胞器。在后一种情况下,冷凝液滴富含某些类型的蛋白质。可以在简单的二元混合物中研究冷凝液滴的一般特征,使用分子动力学模拟。在这次审查中,我讨论了冷凝液滴与仿生和生物膜的相互作用。当冷凝液滴附着在这种膜上时,膜与液滴形成接触线并获得接近该线的非常高的曲率。沿接触线的接触角可以通过光学显微镜观察,导致可能的粘附形态的分类,并确定两个共存液相与膜之间的亲和力对比度。冷凝液滴产生的重塑过程包括润湿转变,膜纳米管的形成以及膜对液滴的完全吞噬和内吞作用。
    Condensate droplets are formed in aqueous solutions of macromolecules that undergo phase separation into two liquid phases. A well-studied example are solutions of the two polymers PEG and dextran which have been used for a long time in biochemical analysis and biotechnology. More recently, phase separation has also been observed in living cells where it leads to membrane-less or droplet-like organelles. In the latter case, the condensate droplets are enriched in certain types of proteins. Generic features of condensate droplets can be studied in simple binary mixtures, using molecular dynamics simulations. In this review, I address the interactions of condensate droplets with biomimetic and biological membranes. When a condensate droplet adheres to such a membrane, the membrane forms a contact line with the droplet and acquires a very high curvature close to this line. The contact angles along the contact line can be observed via light microscopy, lead to a classification of the possible adhesion morphologies, and determine the affinity contrast between the two coexisting liquid phases and the membrane. The remodeling processes generated by condensate droplets include wetting transitions, formation of membrane nanotubes as well as complete engulfment and endocytosis of the droplets by the membranes.
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  • 文章类型: Journal Article
    巨大的脂质囊泡形成不寻常的多球形或“多气球”形状,由几个通过膜颈连接的球体组成。当膜的两侧暴露于不同的糖溶液时,最近观察到这种多球形形状。这种糖不对称引起了自发弯曲,可以通过将内部与外部解决方案交换来反转其标志。这里,回顾和扩展了以前对多球形形状的研究,以发展这些形状的综合理论。每个多球由大球体和小球体组成,以两个半径为特征,大球体半径,Rl,和小球体半径,RS.对于正的自发曲率,多球体可以由大球体和小球体的可变数量Nl和Ns构成。此外,由N*=Nl+Ns等尺寸的球体组成的多球体也是可能的,并且提供恒定平均曲率表面的示例。对于负的自发曲率,所有多球体由一个大球体组成,该球体包围可变数量Ns的小球体。多重球体的这些一般特征源于曲率弹性的两个基本特性:球形膜段的局部形状方程和封闭膜颈的稳定性条件。此外,(Nl+Ns)-多重球可以形成几个方式不同的(Nl+Ns)-模式,其中球体是相互连接的。这些图案可能涉及由连接到两个以上相邻球体的单个球体组成的多球体结。多重球体的几何形状由两个多项式方程控制,这意味着(NlNs)-多重球体只能在一定的有限范围的囊泡体积内形成。每个(Nl+Ns)-模式的特征可以在于取决于闭合颈部的稳定性和多球形几何形状的某一稳定性状态。未来研究的有趣和具有挑战性的主题包括多领域对局部施加的外力的反应,球体之间的膜融合,以创建更高属拓扑的多球形形状,以及由于脂质相分离和膜内结构域而引起的多球体的形态复杂性扩大。
    Giant lipid vesicles form unusual multispherical or \"multi-balloon\" shapes consisting of several spheres that are connected by membrane necks. Such multispherical shapes have been recently observed when the two sides of the membranes were exposed to different sugar solutions. This sugar asymmetry induced a spontaneous curvature, the sign of which could be reversed by swapping the interior with the exterior solution. Here, previous studies of multispherical shapes are reviewed and extended to develop a comprehensive theory for these shapes. Each multisphere consists of large and small spheres, characterized by two radii, the large-sphere radius, Rl, and the small-sphere radius, Rs. For positive spontaneous curvature, the multisphere can be built up from variable numbers Nl and Ns of large and small spheres. In addition, multispheres consisting of N*=Nl+Ns equally sized spheres are also possible and provide examples for constant-mean-curvature surfaces. For negative spontaneous curvature, all multispheres consist of one large sphere that encloses a variable number Ns of small spheres. These general features of multispheres arise from two basic properties of curvature elasticity: the local shape equation for spherical membrane segments and the stability conditions for closed membrane necks. In addition, the (Nl+Ns)-multispheres can form several (Nl+Ns)-patterns that differ in the way, in which the spheres are mutually connected. These patterns may involve multispherical junctions consisting of individual spheres that are connected to more than two neighboring spheres. The geometry of the multispheres is governed by two polynomial equations which imply that (Nl+Ns)-multispheres can only be formed within a certain restricted range of vesicle volumes. Each (Nl+Ns)-pattern can be characterized by a certain stability regime that depends both on the stability of the closed necks and on the multispherical geometry. Interesting and challenging topics for future studies include the response of multispheres to locally applied external forces, membrane fusion between spheres to create multispherical shapes of higher-genus topology, and the enlarged morphological complexity of multispheres arising from lipid phase separation and intramembrane domains.
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  • 文章类型: Journal Article
    Cellular membranes exhibit a fascinating variety of different morphologies, which are continuously remodeled by transformations of membrane shape and topology. This remodeling is essential for important biological processes (cell division, intracellular vesicle trafficking, endocytosis) and can be elucidated in a systematic and quantitative manner using synthetic membrane systems. Here, recent insights obtained from such synthetic systems are reviewed, integrating experimental observations and molecular dynamics simulations with the theory of membrane elasticity. The study starts from the polymorphism of biomembranes as observed for giant vesicles by optical microscopy and small nanovesicles in simulations. This polymorphism reflects the unusual elasticity of fluid membranes and includes the formation of membrane necks or fluid \'worm holes\'. The proliferation of membrane necks generates stable multi-spherical shapes, which can form tubules and tubular junctions. Membrane necks are also essential for the remodeling of membrane topology via membrane fission and fusion. Neck fission can be induced by fine-tuning of membrane curvature, which leads to the controlled division of giant vesicles, and by adhesion-induced membrane tension as observed for small nanovesicles. Challenges for future research include the interplay of curvature elasticity and membrane tension during membrane fusion and the localization of fission and fusion processes within intramembrane domains.
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