sustainable breeding

可持续育种
  • 文章类型: Journal Article
    名人文化鼓励纯种狗和猫出现的时尚,社交媒体,和网上冲动购买。被认为是可爱的特征的流行,古怪,拟人化已经驱动越来越夸张的品种特征吸引美学而不是健康。某些品种的“超类型”已经出现,它们将品种的独特外观带到了极端,超出了对品种标准的预期解释。这很严重,直接和间接的健康和福利后果。极端构象与慢性健康状况相关,包括短头阻塞性气道疾病,眼,牙科,皮肤,和肌肉骨骼疾病。满足超类型需求的小狗和小猫农场以及非法贸易商与忽视身体的不良畜牧业有关,行为,以及父母和后代的心理健康。涉及育种者之间合作的多维方法,遗传学家,业主,兽医,狗窝俱乐部,猫爱好者协会,动物慈善机构,学术界和研究界,商业企业,政府需要保护品种并应对这些挑战。国家狗舍俱乐部和全球合作伙伴正在采取许多举措,以教育宠物主人并支持负责任的宠物所有权和可持续育种。响亮的信息是健康,气质,幸福必须优先于外表。
    Fashions in the appearance of purebred dogs and cats are encouraged by celebrity culture, social media, and online impulse buying. The popularity of characteristics perceived as cute, quirky, and anthropomorphic has driven increasingly exaggerated breed features appealing to aesthetics rather than health. \'Hypertypes\' of some breeds have emerged that take a breed\'s distinctive appearance to extremes beyond the intended interpretation of breed standards. This has severe, direct and indirect health and welfare consequences. Extreme conformations are associated with chronic health conditions including brachycephalic obstructive airway disorder, ocular, dental, skin, and musculoskeletal disorders. Puppy and kitten farms and illegal traders that meet the demand for hypertypes are associated with poor husbandry that neglects the physical, behavioral, and mental health of parents and offspring. A multidimensional approach involving collaboration between breeders, geneticists, owners, veterinarians, kennel clubs, cat fanciers\' associations, animal charities, the academic and research communities, commercial enterprises, and governments is needed to safeguard breeds and tackle these challenges. There are many ongoing initiatives by national kennel clubs and global partnerships to educate pet owners and support responsible pet ownership and sustainable breeding. The resounding message is that health, temperament, and well-being must be prioritized over appearance.
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  • 文章类型: Journal Article
    蜜蜂的仪器授精允许两种相反的繁殖策略。在单菌落授精(SCI)中,所有为女王授精的无人机都来自一个殖民地。在合并精液授精(PSI)中,许多基因不同的无人机的精子被混合,女王从由此产生的无人机池中受精。虽然SCI允许最大限度的谱系控制,PSI的支持者声称减少近交并保持遗传变异。使用随机模拟研究,我们比较了SCI和PSI下小型蜜蜂种群的遗传进展和近交率。涵盖了四种不同的选择标准:估计育种值(EBV),表型,真实育种值(TBV)和随机选择。在基于EBV的截断选择下,SCI的遗传增益比PSI高9.0%至44.4%,但近亲繁殖率大大提高。在表型或TBV选择下,SCI和PSI在遗传进展方面的差距缩小。在整个过程中,PSI的近交率低于SCI,但在EBV截断选择下差异仅很大。因此,由于PSI与现代遗传评估方法不兼容,因此并未成为可行的育种策略。相反,SCI是首选,但不是严格的截断选择,需要安装避免近亲繁殖的策略。
    Instrumental insemination of honeybees allows for two opposing breeding strategies. In single colony insemination (SCI), all drones to inseminate a queen are taken from one colony. In pooled semen insemination (PSI), sperm of many genetically diverse drones is mixed and queens are fertilized from the resulting drone pool. While SCI allows for maximum pedigree control, proponents of PSI claim to reduce inbreeding and maintain genetic variance. Using stochastic simulation studies, we compared genetic progress and inbreeding rates in small honeybee populations under SCI and PSI. Four different selection criteria were covered: estimated breeding values (EBV), phenotypes, true breeding values (TBV) and random selection. Under EBV-based truncation selection, SCI yielded 9.0% to 44.4% higher genetic gain than PSI, but had vastly increased inbreeding rates. Under phenotypical or TBV selection, the gap between SCI and PSI in terms of genetic progress narrowed. Throughout, PSI yielded lower inbreeding rates than SCI, but the differences were only substantial under EBV truncation selection. As a result, PSI did not appear as a viable breeding strategy owing to its incompatibility with modern methods of genetic evaluation. Instead, SCI is to be preferred but instead of strict truncation selection, strategies to avoid inbreeding need to be installed.
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  • 文章类型: Journal Article
    交配控制在蜜蜂繁殖中至关重要,通常通过将处女皇后带到隔离的交配站(IMS)进行婚礼飞行来保证。然而,大多数育种计划都难以提供足够多的IMS。研究机构通常对蜜蜂进行仪器授精,但其在育种计划中替代IMS的潜力尚未得到充分研究。我们进行了随机模拟,以比较在遗传进展和近交发育方面的工具授精策略和IMS上的交配。我们专注于父代间隔的作用,与使用IMS的三年相比,使用仪器授精可以缩短为两年。70年后,与IMS策略相比,工具性授精产生的遗传增益高达42%,尤其是在几乎没有可用交配位点的情况下。仪器授精和IMS的近交率相当。当工具授精的父代间隔延长到三年时,可持续育种所需的无人机生产商数量大幅减少。相比之下,当间隔缩短到两年时,它产生了最高的世代近亲繁殖率(高达2.28%)。总的来说,使用单个殖民地的无人机进行仪器授精似乎是蜜蜂育种的可行策略,也是IMS的有希望的替代方案。
    Mating control is crucial in honeybee breeding and commonly guaranteed by bringing virgin queens to isolated mating stations (IMS) for their nuptial flights. However, most breeding programs struggle to provide sufficiently many IMS. Research institutions routinely perform instrumental insemination of honeybees, but its potential to substitute IMS in breeding programs has not been sufficiently studied. We performed stochastic simulations to compare instrumental insemination strategies and mating on IMS in terms of genetic progress and inbreeding development. We focused on the role of paternal generation intervals, which can be shortened to two years with instrumental insemination in comparison to three years when using IMS. After 70 years, instrumental insemination yielded up to 42% higher genetic gain than IMS strategies-particularly with few available mating sites. Inbreeding rates with instrumental insemination and IMS were comparable. When the paternal generation interval in instrumental insemination was stretched to three years, the number of drone producers required for sustainable breeding was reduced substantially. In contrast, when shortening the interval to two years, it yielded the highest generational inbreeding rates (up to 2.28%). Overall, instrumental insemination with drones from a single colony appears as a viable strategy for honeybee breeding and a promising alternative to IMS.
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  • 文章类型: Journal Article
    目的:Dasypyrumvillosum(2n=2x=14)具有对六倍体和四倍体小麦改良的潜在有益基因。由于其开放授粉性质,在种质之间和内部存在高度多样化的染色体变异。小麦DvillosumT6VS·6AL易位被广泛用于育种,主要是因为6VS片段中的基因Pm21赋予了较高且持久的白粉病抗性。然而,这种易位的广泛使用可能会缩小小麦的遗传基础。更好的解决方案是利用多样化的D.villosum种质作为小麦育种的遗传来源。对D.villosum种质之间的细胞学和遗传多态性的分析也提供了有关该物种的遗传进化信息。使用细胞遗传学和分子工具,我们分析了D.villosum种质之间的遗传多态性,并开发了共有核型,以帮助有益基因从D.villosum渗入小麦。
    方法:FISH重复的多重探针,GISH和分子标记用于检测D.villosum种质之间的染色体多态性。多态信号块类型,染色体异质性和杂合性,和染色体多态信息含量用于遗传多样性分析。
    结果:开发了D.villosum的共有核型,并确定了单个D.villosum染色体相对于小麦的同源状态。pSc119.2,(GAA)10和AFA家族的串联重复探针产生高分辨率信号,不仅在D.villosum染色体中显示出不同的信号模式,而且还揭示了串联重复序列在染色体和种质之间的不同分布。从13种D.villosum种质中共鉴定出106条多态性染色体,并观察到高水平的染色体杂合性和异质性。通过广泛的杂交将56个多态性染色体的子集转移到硬粒小麦中,在两个新开发的durum-D中描述了七个多态性染色体。villosum两倍体。
    结论:D.villosum的共有核型和寡核苷酸FISH促进了多态性信号块的鉴定以及D.villosum种质之间高水平的染色体杂合性和异质性,在新开发的两倍体中看到。D.villosum丰富的遗传多样性和等位基因的范围,可通过倍性杂交利用,回交和重组(染色体工程),允许将生物和非生物胁迫抗性引入小麦,转化为提高产量,最终用途质量和作物可持续性。
    Dasypyrum villosum (2n = 2x = 14) harbours potentially beneficial genes for hexaploid and tetraploid wheat improvement. Highly diversified chromosome variation exists among and within accessions due to its open-pollination nature. The wheat-D. villosum T6VS·6AL translocation was widely used in breeding mainly because gene Pm21 in the 6VS segment conferred high and lasting powdery mildew resistance. However, the widespread use of this translocation may narrow the genetic base of wheat. A better solution is to utilize diversified D. villosum accessions as the genetic source for wheat breeding. Analysis of cytological and genetic polymorphisms among D. villosum accessions also provides genetic evolution information on the species. Using cytogenetic and molecular tools we analysed genetic polymorphisms among D. villosum accessions and developed consensus karyotypes to assist the introgression of beneficial genes from D. villosum into wheat.
    A multiplex probe of repeats for FISH, GISH and molecular markers were used to detect chromosome polymorphisms among D. villosum accessions. Polymorphic signal block types, chromosome heterogeneity and heterozygosity, and chromosome polymorphic information content were used in genetic diversity analysis.
    Consensus karyotypes of D. villosum were developed, and the homoeologous statuses of individual D. villosum chromosomes relative to wheat were determined. Tandem repeat probes of pSc119.2, (GAA)10 and the AFA family produced high-resolution signals and not only showed different signal patterns in D. villosum chromosomes but also revealed the varied distribution of tandem repeats among chromosomes and accessions. A total of 106 polymorphic chromosomes were identified from 13 D. villosum accessions and high levels of chromosomal heterozygosity and heterogeneity were observed. A subset of 56 polymorphic chromosomes was transferred into durum wheat through wide crosses, and seven polymorphic chromosomes are described in two newly developed durum-D. villosum amphidiploids.
    Consensus karyotypes of D. villosum and oligonucleotide FISH facilitated identification of polymorphic signal blocks and a high level of chromosomal heterozygosity and heterogeneity among D. villosum accessions, seen in newly developed amphiploids. The abundant genetic diversity of D. villosum and range of alleles, exploitable through interploid crosses, backcrosses and recombination (chromosome engineering), allow introduction of biotic and abiotic stress resistances into wheat, translating into increasing yield, end-use quality and crop sustainability.
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  • 文章类型: Journal Article
    欧洲蜜蜂种群正在出现现代繁殖结构。然而,虽然蜜蜂的遗传评估越来越被人们所理解,关于选择决定如何塑造种群的遗传结构,人们知之甚少。我们进行了模拟,评估了100种不同的选择方案,由大坝和父亲的选择率定义,在每年200、500或1000个菌落的种群中,考虑到四个不同的数量性状,反映不同的遗传参数和有影响的基因座数量。注重可持续性,我们评估了100多年的遗传进展,并将其与近交发展联系起来。虽然所有种群都允许可持续育种,每代近亲繁殖率低于1%,最佳选择率不同,可持续选择在较小的人群中更难实现,并且在选择性状中母性和直接效应之间存在更强的负相关。在小人口中,所有候选女王中的三分之一或四分之一应该被选为水坝,而对于更大的人口,这个数字下降到六分之一。此外,我们的模拟表明,特别是在小人口中,应该提供尽可能多的父亲。我们得出的结论是,精心应用的育种为目前濒临灭绝的蜜蜂亚种提供了良好的前景,因为可持续的遗传进步提高了他们对养蜂人的吸引力。
    Modern breeding structures are emerging for European honeybee populations. However, while genetic evaluations of honeybees are becoming increasingly well understood, little is known about how selection decisions shape the populations\' genetic structures. We performed simulations evaluating 100 different selection schemes, defined by selection rates for dams and sires, in populations of 200, 500, or 1000 colonies per year and considering four different quantitative traits, reflecting different genetic parameters and numbers of influential loci. Focusing on sustainability, we evaluated genetic progress over 100 years and related it to inbreeding developments. While all populations allowed for sustainable breeding with generational inbreeding rates below 1% per generation, optimal selection rates differed and sustainable selection was harder to achieve in smaller populations and for stronger negative correlations of maternal and direct effects in the selection trait. In small populations, a third or a fourth of all candidate queens should be selected as dams, whereas this number declined to a sixth for larger population sizes. Furthermore, our simulations indicated that, particularly in small populations, as many sires as possible should be provided. We conclude that carefully applied breeding provides good prospects for currently endangered honeybee subspecies, since sustainable genetic progress improves their attractiveness to beekeepers.
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  • 文章类型: Journal Article
    PuraRazaEspañol(PRE)是西班牙本土马种群,分布在65个国家,由一个协会管理。自1960年代以来,繁殖动物已稳定地出口到其他国家,以建立当地的亚种群。我们分析了来自至少有80只活跃动物的国家(27个国家,占完整谱系中总动物的77%)的215,500只动物的PRE马群体(MP)的遗传结构。还研究了来自活性动物的基因型(完整谱系中总动物的59%)。使用经典参数如近亲繁殖(F)进行MP的遗传分析,coancestry,创始人的贡献,国家间创始人/祖先的有效数量(fe/fa)和基因流动。结果显示,强积金系数在过去20年(1990-2013年)有所下降,这表明对F的明确管理。创始人对各国遗传变异的贡献主要来自女性(73.6%)。总的来说,创始人的不平衡贡献反映了世代遗传多样性的高度丧失(整个MP的fe/fa低至32/19)。尽管有这种不同的贡献,每个国家对全球多样性的贡献比例相似。国内最高的血统值对应于古巴(0.1509),是唯一一个拥有高度近亲繁殖个体(超过12%)的国家,最低值对应于西班牙(0.0574)。这些结果应该有助于避免遗传变异性的进一步下降和F水平的增加。尤其是像古巴这样的小国。并行,只有九个国家在一个人口中呈现后代,建议所有国家的共同起源和/或种群之间遗传物质的大量交换。西班牙和美国的基因流速最高。这些结果支持了协调管理战略的需要,特别是促进遗传物质的交换,以增加有效种群规模并保持PRE马种群的遗传多样性水平。
    The Pura Raza Español (PRE) is an autochthonous Spanish horse population distributed in 65 countries and managed by a single association. Since 1960s, breeding animals have been steadily exported to other countries to establish local subpopulations. We analysed the genetic structure of a PRE horse meta-population (MP) of 215,500 animals from countries with at least 80 active animals (27 countries comprising 77% of the total animals in the complete pedigree). Genotypes from active animals (59% of the total animals in the complete pedigree) were also studied. Genetic analysis of the MP was performed using classical parameters such as inbreeding (F), coancestry, founder contribution, effective number of founders/ancestors (fe/fa) and gene flow between countries. Results showed that the MPF coefficient decreased in the last two decades (1990-2013), indicating an explicit management against F. Founder contribution to genetic variability across countries mainly came from females (73.6%). In general, unbalanced contributions of founders reflected the high loss of genetic diversity along generations (fe/fa as low as 32/19 for the whole MP). Despite this differential contribution, the proportional contribution to the global diversity of each country was similar. The highest within-country coancestry value corresponded to Cuba (0.1509), being the only country with highly inbred individuals (over 12%), and the lowest value corresponded to Spain (0.0574). These results should help to avoid further declines in genetic variability and increases in F levels, especially in small countries like Cuba. In parallel, only nine countries presented descendants in a single population, suggesting a common origin for all countries and/or a substantial exchange of genetic material between populations. Spain and the US showed the highest gene flow rates. These results support the need of a coordinated management strategy, especially promoting the exchange of genetic material to increase the effective population size and maintain the levels of genetic diversity in the PRE horse population.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    本研究中的基因分型(30个微卫星)18个绵羊品种的系统发育布局要求并提供了评估自然和人工选择和细分绵羊种群中遗传多样性的中性和适应性成分的机会。来自波斯尼亚和黑塞哥维那和克罗地亚的七个Pramenka菌株的特征是人工选择强度非常低,保留了最高的中性遗传变异性。在相当多的人工隔离和选择下,欧洲中部和西北部的八个品种保留了最低的遗传变异性。只有各种系统发育参数的组合才能为在可变的自然和人工选择下在所研究的岛屿和大陆绵羊品种中起作用的潜在进化力提供合理的解释。超过60%的总遗传,多样性被分配给几乎未选择的Pramenka菌株,另外25%的本地人适度选择了GraueGehoernteHeidschnucke,并大量选择了OstfriesisscheMilchschafe。一些经济上非常重要的品种和菌株没有促成具有最大遗传多样性的库,它们在各自国家的文化遗产中发挥着重要作用。
    The phylogenetic layout of the genotyped (30 microsatellite) 18 sheep breeds in this study demands and provides the opportunity to evaluate both neutral and adaptive components of genetic diversity in a naturally and artificially selected and subdivided sheep population. Seven Pramenka strains from Bosnia and Herzegovina and Croatia characterized by a very low intensity of artificial selection, preserved the highest neutral genetic variability. Eight central and north-western European breeds under considerable artificial isolation and selection preserved the lowest genetic variability. Only combinations of various phylogenetic parameters offer a reasonable explanation for underlying evolutionary forces working in the investigated island and mainland sheep breeds under variable natural and artificial selection. More than 60% of total genetic, diversity was allocated to virtually unselected Pramenka strains, and an additional 25% to native moderately selected Graue Gehoernte Heidschnucke and intensively selected Ostfriesische Milchschafe. Some economically very important breeds and strains did not contribute to a pool with maximal genetic diversity, while they play an important role in the cultural heritage of respective countries.
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  • 文章类型: Journal Article
    我们用105个微卫星估计了21个欧洲牛品种的中性多样性。其中9个类似于未选择的巴尔干Buša菌株,具有扩散的繁殖障碍,其他12个则具有强烈分化,孤立的品种。由于中性遗传多样性对种群长期适应能力的影响,我们讨论了在所调查的牛品种的细分群体中不同保护优先级的长期结果。对总遗传多样性库的最佳贡献将超过95%的长期相关中性多样性分配给实际上未选择的巴尔干Buša菌株,而总方差的最大化更喜欢近交品种。当前的人工选择方法,比如基因组选择加速,低估的特征恢复很快就变得不可能了。我们强调,在21世纪可持续和有效的牲畜育种和生产系统中,未来的基因型可能需要当前中性甚至有害的等位基因。我们提供的累积证据表明,长期生存依赖于遗传复杂性,而复杂性依赖于等位基因多样性。我们的结果表明,实际上未经选择,非均匀菌株具有至关重要的中性多样性,应在全球范围内保持高度优先。作为一个例子,我们建议合作维护无差异,高度分散,和迅速消失的巴尔干人口。
    We estimated neutral diversity of 21 European cattle breeds with 105 microsatellites. Nine of them resembled unselected Balkan Buša strains with diffuse breeding barriers and the 12 others were strongly differentiated, isolated breeds. Because of the impact of neutral genetic diversity on long-term population adaptive capacity, we discuss the long-term outcome of different conservation priorities in a subdivided metapopulation of the investigated cattle breeds. The optimal contribution to a pool of total genetic diversity allocated more than 95% of long-term relevant neutral diversity to virtually unselected strains of the Balkan Buša, while the maximization of total variance preferred inbred breeds. Current artificial selection methods, such as genomic selection sped up and a recovery of underestimated traits becomes quickly impossible. We emphasize that currently neutral and even deleterious alleles might be required for future genotypes in sustainable and efficient livestock breeding and production systems of a 21st century. We provide cumulative evidences that long-term survival relies on genetic complexity and complexity relies on allelic diversity. Our results suggest that virtually unselected, nonuniform strains harbor a crucial proportion of neutral diversity and should be conserved with high global priority. As one example, we suggest a cooperative maintenance of the nondifferentiated, highly fragmented, and fast vanishing metapopulation of Balkan Buša.
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