structure-activity relationship

结构 - 活动关系
  • 文章类型: Journal Article
    表达在CD8+T细胞的表面,CD8共受体是有助于抗原识别的T细胞的关键组成部分,免疫细胞成熟,和免疫细胞信号。虽然CD8被广泛认为是常规CD8+αβT细胞的共刺激分子,最近的报道强调了它在适应性和先天免疫反应中的多方面作用.在这次审查中,我们讨论了CD8与其免疫调节特性有关的效用。我们概述了不同CD8结构域的独特结构和功能(胞外域,铰链,跨膜,细胞质尾)在CD8αα同二聚体和CD8αβ异二聚体的不同特性的背景下。我们讨论了通常用于构建用于免疫治疗的嵌合抗原受体的CD8特征。我们描述了CD8与经典MHC-I的分子相互作用,非经典MHCs,和参与T细胞信号传导的Lck伙伴。讨论了改变免疫应答的工程化和天然存在的CD8突变。综述了靶向CD8的抗CD8单克隆抗体(mAB)的应用。最后,我们研究了几种CD8/mAB复合物的独特结构和功能。总的来说,这些发现揭示了CD8和CD8结合伴侣的免疫调节特性,不仅揭示了免疫系统的基本功能,而是推进靶向免疫治疗的转化研究。
    Expressed on the surface of CD8+ T cells, the CD8 co-receptor is a key component of the T cells that contributes to antigen recognition, immune cell maturation, and immune cell signaling. While CD8 is widely recognized as a co-stimulatory molecule for conventional CD8+ αβ T cells, recent reports highlight its multifaceted role in both adaptive and innate immune responses. In this review, we discuss the utility of CD8 in relation to its immunomodulatory properties. We outline the unique structure and function of different CD8 domains (ectodomain, hinge, transmembrane, cytoplasmic tail) in the context of the distinct properties of CD8αα homodimers and CD8αβ heterodimers. We discuss CD8 features commonly used to construct chimeric antigen receptors for immunotherapy. We describe the molecular interactions of CD8 with classical MHC-I, non-classical MHCs, and Lck partners involved in T cell signaling. Engineered and naturally occurring CD8 mutations that alter immune responses are discussed. The applications of anti-CD8 monoclonal antibodies (mABs) that target CD8 are summarized. Finally, we examine the unique structure and function of several CD8/mAB complexes. Collectively, these findings reveal the promising immunomodulatory properties of CD8 and CD8 binding partners, not only to uncover basic immune system function, but to advance efforts towards translational research for targeted immunotherapy.
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  • 文章类型: Journal Article
    肠道病毒71型(EV71)是人类公认的主要致病因子,脚,和口蹄疫(HFMD),由于其广泛的影响,引起了全球重大的公共卫生问题。尽管流行,目前的临床治疗缺乏有效的抗病毒药物。源自海参的岩藻糖基化硫酸软骨素(FCS)表现出一系列生物活性,包括有效的抗病毒作用。这项研究为FCS对EV71的有效抗病毒功效提供了令人信服的证据。为了进一步阐明结构变化对抗EV71活性的影响,制备并分析了具有不同硫酸化模式和多种FCS衍生物的天然FCS。值得注意的是,这项研究介绍了海参HolothuriascabraJaege和Holothuriafuscopunctata的FCS的详细结构表征。结构-活性关系的分析表明,分子量,硫酸化岩藻糖分支,和硫酸化模式都是导致FCS对EV71的有效抑制作用的关键因素。有趣的是,分子量成为抗病毒效力的最重要的结构决定因素。这些发现表明,利用FCS作为一种创新的EV71进入抑制剂治疗HFMD具有很好的潜力。
    Enterovirus 71 (EV71) is recognized as a major causative agent of hand, foot, and mouth disease (HFMD), posing a significant global public health concern due to its widespread impact and resulting in a major public health issue worldwide. Despite its prevalence, current clinical therapy lacks effective antiviral agents. Fucosylated chondroitin sulfates (FCS) derived from sea cucumber exhibits a range of biological activities including potent antiviral effects. This study provides compelling evidence of the potent antiviral efficacy of FCS against EV71. To further elucidate the impact of structural variations on the anti-EV71 activity, native FCSs with diverse sulfation patterns and a varity of FCS derivatives were prepared and analyzed. Notably, this study presents the detailed structural characterization of FCSs from the sea cucumbers Holothuria scabra Jaege and Holothuria fuscopunctata. Analysis of the structure-activity relationships revealed that molecular weight, sulfated fucose branches, and sulfation pattern were all crucial factors contributing to the potent inhibitory effects of FCS against EV71. Interestingly, molecular weight emerged as the most significant structural determinant of the antiviral potency. These findings suggest the promising potential of utilizing FCS as an innovative EV71 entry inhibitor for the treatment of HFMD.
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  • 文章类型: Journal Article
    功能化微晶纤维素(MCC)复合材料作为吸附剂的结构-功能关系尚不清楚。在这里,橘皮衍生的MCC(即,OP-OH-H-25)用不同的功能剂处理,制备用于镉(Cd(II))去除的吸附剂。巯基乙酸和正磷酸对MCC的表面位点类型和含量没有明显影响。或者,他们有效地纯化了OP-OH-H-25,并产生了纤维素含量增加的OP-OH-SH和OP-OH-P样品。相比之下,甘氨酸修饰产生的OP-OH-NH2具有更少的巯基/羧基官能团和更多的酰胺/氨基位点。MCC相关材料的pH依赖性Cd(II)去除趋势显示出具有不同吸附模式的三个连续阶段。Cd(II)在OP-OH-SH上的吸附动力学过程,OP-OH-P,OP-OH-NH2在0.25h后达到平衡,在OP-OH-H-25上比0.5小时快。MCC相关吸附剂的最大Cd(II)吸附能力为OP-OH-P(151.81mg/g)>OP-OH-SH(150.80mg/g)>OP-OH-H-25(124.90mg/g)>>OP-OH-NH2(55.23mg/g)。OP-OH-P在混合水生成分的干扰下表现出最强的Cd(II)吸附能力。固有的Cd(II)吸附机制被确定为内球络合和阳离子-π键相互作用。总的来说,在制备用于净化Cd(II)污染水系统的官能化MCC吸附剂时,改性剂的选择优先级是正磷酸>巯基乙酸>>甘氨酸。
    The structure-function relationship of functionalized microcrystalline cellulose (MCC) composites as adsorbents remains unclear. Herein, the orange peel-derived MCC (i.e., OP-OH-H-25) was treated by different functional agents to prepare adsorbents for cadmium (Cd(II)) removal. Mercaptoacetic acid and orthophosphoric acid did not apparently impact MCC\'s surface site types and contents. Alternatively, they efficiently purified OP-OH-H-25 and generated OP-OH-SH and OP-OH-P samples with increased cellulose amounts. In contrast, the glycine modification produced OP-OH-NH2 with fewer sulfhydryl/carboxyl functional groups and more amide/amino sites. The pH-dependent Cd(II) removal trends by the MCC-related materials showed three successive stages with disparate sorption modes. The Cd(II) sorption kinetics processes on OP-OH-SH, OP-OH-P, and OP-OH-NH2 reached equilibrium after 0.25 h, faster than 0.5 h on OP-OH-H-25. The maximum Cd(II) sorption capacities of MCC-related adsorbents were OP-OH-P (151.81 mg/g) > OP-OH-SH (150.80 mg/g) > OP-OH-H-25 (124.90 mg/g) > > OP-OH-NH2 (55.23 mg/g). OP-OH-P exhibited the strongest Cd(II) sorption ability under the interference of mixed aquatic components. The intrinsic Cd(II) sorption mechanisms were identified as inner-sphere complexation and cation-π bond interaction. Overall, the select priority of modifying agents is orthophosphoric acid > mercaptoacetic acid > > glycine when preparing functionalized MCC adsorbents for purifying Cd(II)-polluted water systems.
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  • 文章类型: Journal Article
    本研究确定了不同链长的大蒜寡糖/多糖对葡聚糖硫酸钠(DSS)诱导的小鼠结肠炎的保护作用,并阐明了结构-功能关系。结果表明,口服大蒜寡糖/多糖降低了疾病活动指数,减少结肠缩短和脾脏肿大,并改善小鼠结肠的病理损伤。结肠前/抗炎细胞因子的失调明显减轻,伴随着上调的抗氧化酶,TLR4-MyD88-NF-κB信号通路被阻断,增强肠屏障的完整性,并恢复了SCFA的生产。大蒜低聚/多糖还通过扩大有益细菌并抑制有害细菌的生长来逆转结肠炎小鼠的肠道微生物群失调。与低分子量寡糖/多糖相比,高分子量多糖对DSS诱导的小鼠绞痛症状具有更强的缓解作用,可能是由于它们在结肠中发酵的能力更强。一起来看,这项研究证明了大蒜寡糖/多糖的抗炎作用,并表明高分子量多糖部分在缓解DSS诱导的结肠炎方面更有效.
    The present study identified the protective effects of garlic oligo/poly-saccharides of different chain lengths against dextran sulfate sodium (DSS)-induced colitis in mice and elucidated the structure-function relationships. The results showed that oral intake of garlic oligo/poly-saccharides decreased disease activity index, reduced colon shortening and spleen enlargement, and ameliorated pathological damage in the mouse colon. The dysregulation of colonic pro/anti-inflammatory cytokines was significantly alleviated, accompanied by up-regulated antioxidant enzymes, blocked TLR4-MyD88-NF-κB signaling pathway, enhanced intestinal barrier integrity, and restored SCFA production. Garlic oligo/poly-saccharides also reversed gut microbiota dysbiosis in colitic mice by expanding beneficial bacteria and suppressing the growth of harmful bacteria. High-molecular-weight polysaccharides exhibited stronger alleviating effects on DSS-induced colitic symptoms in mice than low-molecular-weight oligo/poly-saccharides did, probably due to their greater ability to be fermented in the colon. Taken together, this study demonstrated the anti-inflammatory effects of garlic oligo/poly-saccharides and revealed that high-molecular-weight polysaccharide fractions were more effective in alleviating DSS-induced colitis.
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  • 文章类型: Journal Article
    抗菌素耐药性引起了全球健康关注,并需要发现新的抗微生物剂或靶标来解决此问题。氟喹诺酮(FN),DNA促旋酶和拓扑异构酶IV抑制剂,有助于征服抗菌素耐药性,因为它为研究人员提供了灵活性,可以合理地修改其结构以提高效力和功效。这篇综述提供了对FN合理修改的见解,抵抗FN的原因,以及FNs的作用机制。在这里,我们探索了FN类似物的抗菌活性的最新进展以及各种替代的效果,重点是利用FN核来寻找新的潜在抗菌候选药物。此外,这篇综述还提供了环丙沙星和诺氟沙星两种广泛处方的FN的比较分析,解释他们设计的理由,构效关系(SAR),抵抗的原因,和机械研究。这些见解将通过帮助新研究人员设计新颖有效的基于FN的化合物来对抗抗微生物耐药性,从而对新研究人员有利。
    Antimicrobial resistance poses a global health concern and develops a need to discover novel antimicrobial agents or targets to tackle this problem. Fluoroquinolone (FN), a DNA gyrase and topoisomerase IV inhibitor, has helped to conquer antimicrobial resistance as it provides flexibility to researchers to rationally modify its structure to increase potency and efficacy. This review provides insights into the rational modification of FNs, the causes of resistance to FNs, and the mechanism of action of FNs. Herein, we have explored the latest advancements in antimicrobial activities of FN analogues and the effect of various substitutions with a focus on utilizing the FN nucleus to search for novel potential antimicrobial candidates. Moreover, this review also provides a comparative analysis of two widely prescribed FNs that are ciprofloxacin and norfloxacin, explaining their rationale for their design, structure-activity relationships (SAR), causes of resistance, and mechanistic studies. These insights will prove advantageous for new researchers by aiding them in designing novel and effective FN-based compounds to combat antimicrobial resistance.
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  • 文章类型: Journal Article
    鱼酱,来自发酵鱼,经过六个月的发酵过程,表现出明显的抗氧化作用,我们认为鱼露中存在潜在的抗氧化肽。我们与世隔绝,纯化,并通过使用发酵6个月的鱼露鉴定出潜在的生物活性抗氧化肽。此外,分子模拟研究了这些生物活性肽的抗氧化作用机制。分子对接结果显示FS4-1(MHQLSKK),FS4-2(VLDNSPER),FS4-3(MNPPAASIK),FS6-1(VLKQAAAGR),和FS6-2(SPDVSPRR),可以与Keap1受体对接。确定了Keap1与肽结合的主要力(范德华力和氢键)和关键位点(GLY509和ALA510)。活性中心位于氨基酸Met的侧链C7H78和C7H79位。我们在这里鉴定了鱼露中的抗氧化肽,并通过分子模拟揭示了抗氧化机制。
    Fish sauce, derived from fermented fish, exhibits a notable antioxidant effect after a six-month fermentation process, and we propose that potential antioxidant peptides were present in the fish sauce. We isolated, purified, and identified potential bioactive antioxidant peptides by using fish sauce fermented for 6 months. Additionally, molecular simulation was employed to investigate the antioxidant action mechanism of these bioactive peptides. The molecular docking results revealed that FS4-1 (MHQLSKK), FS4-2 (VLDNSPER), FS4-3 (MNPPAASIK), FS6-1(VLKQAAAGR), and FS6-2 (SPDVSPRR), could dock with the Keap1 receptor. The primary force (Van der Waals\' force and hydrogen bonds) and key sites (GLY509 and ALA510) of Keap1 binding to peptides were determined. The active center was located in the side chain of amino acid Met at positions C7H78 and C7H79. We here identified antioxidant peptides in fish sauce and revealed the antioxidant mechanism through molecular simulations.
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  • 文章类型: Journal Article
    基质金属蛋白酶-2(MMP-2)的过表达与白血病特别是慢性粒细胞白血病(CML)具有相关性。然而,迄今为止,市场上还没有这种MMP-2抑制剂用于治疗白血病。在这项研究中,合成,生物学评价,并对一组联苯磺酰胺衍生物作为有前途的MMP-2抑制剂进行了分子建模研究,关注它们作为抗白血病疗法的潜在应用。化合物DH-18和DH-19发挥最有效的MMP-2抑制作用(IC50为139.45nM和115.16nM,分别)对CML细胞系K562具有有效的抗白血病功效(IC50为0.338µM和0.398µM,分别)。前导分子DH-18和DH-19使MMP-2的表达分别降低了21.3%和17.8%,分别具有有效的凋亡诱导(45.4%和39.8%,分别)在K562细胞系中。此外,这两种化合物都显著阻止了细胞周期的不同阶段。再一次,这两种分子在ACHN细胞系中都显示了有希望的抗血管生成功效.然而,分子对接和分子动力学(MD)模拟研究表明,DH-18通过异羟肟酸锌结合基团(ZBG)与催化Zn2离子形成强二齿螯合。除此之外,MD模拟研究还揭示了DH-18和MMP-2的稳定结合相互作用,以及与活性位点氨基酸残基His120,Glu121,His124,His130,Pro140和Tyr142的关键相互作用.简而言之,这项研究强调了以联苯磺酰胺为基础的新型且有前景的MMP-2抑制剂对于为潜在的CML治疗开辟新途径的重要性.
    Overexpression of matrix metalloproteinase-2 (MMP-2) possesses a correlation with leukemia especially chronic myeloid leukemia (CML). However, no such MMP-2 inhibitor has come out in the market to date for treating leukemia. In this study, synthesis, biological evaluation, and molecular modeling studies of a set of biphenylsulfonamide derivatives as promising MMP-2 inhibitors were performed, focusing on their potential applications as antileukemic therapeutics. Compounds DH-18 and DH-19 exerted the most effective MMP-2 inhibition (IC50 of 139.45 nM and 115.16 nM, respectively) with potent antileukemic efficacy against the CML cell line K562 (IC50 of 0.338 µM and 0.398 µM, respectively). The lead molecules DH-18 and DH-19 reduced the MMP-2 expression by 21.3% and 17.8%, respectively with effective apoptotic induction (45.4% and 39.8%, respectively) in the K562 cell line. Moreover, both these compounds significantly arrested different phases of the cell cycle. Again, both these molecules depicted promising antiangiogenic efficacy in the ACHN cell line. Nevertheless, the molecular docking and molecular dynamics (MD) simulation studies revealed that DH-18 formed strong bidentate chelation with the catalytic Zn2+ ion through the hydroxamate zinc binding group (ZBG). Apart from that, the MD simulation study also disclosed stable binding interactions of DH-18 and MMP-2 along with crucial interactions with active site amino acid residues namely His120, Glu121, His124, His130, Pro140, and Tyr142. In a nutshell, this study highlighted the importance of biphenylsulfonamide-based novel and promising MMP-2 inhibitors to open up a new avenue for potential therapy against CML.
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  • 文章类型: Journal Article
    白米的消费已被视为非传染性疾病,包括肥胖和2型糖尿病的潜在危险因素。因此,人们越来越注意开发具有可接受的适口性的缓慢消化的大米。作为米粒中最丰富的成分,淀粉的精细分子结构不仅控制质地和香气,而且是米饭的消化特性。人们进行了大量的研究,看什么分子结构特征控制着米饭的消化率和适口性,其还可以与淀粉生物合成相关联,以使得能够以非经验方式选择具有目标官能团的盐。尽管如此,由于实验设计不当,进展甚微。例如,在一项研究中,很少研究淀粉细分子结构对米饭消化率和适口性的影响,导致各种消化结果。即使是同一个样本,很难得出一致的结论,有时,结果/结论甚至是有争议的。在这篇综述论文中,淀粉细分子结构对质构的影响,总结了熟白米的香气和淀粉消化特性,然后详细讨论了支链淀粉和直链淀粉的精细分子结构之间的关系,从而得出了淀粉分子结构与熟白米性质关系的更一般的结论。预计这篇综述论文可以在如何开发具有可接受的适口性的缓慢消化的水稻方面提供有用的信息。
    White rice consumption has been regarded as a potential risk factor for non-communicable diseases including obesity and type 2 diabetes. Thus, increasing attention has been paid to develop slowly digested rices with acceptable palatability. As the most abundant component of rice kernels, the fine molecular structure of starch controls not only the texture & aroma, but also the digestion properties of cooked rice. A large number of studies have been conducted to see what molecular structural features control the digestibility and palatability of cooked rice, which further could be connected to starch biosynthesis to enable rices with targeted functionalities to be chosen in non-empirical ways. Nonetheless, little progress has been made because of improper experimental designs. For example, the effects of starch fine molecular structure on cooked rice digestibility and palatability has been rarely studied within one study, resulting to various digestion results. Even for the same sample, it is hard to obtain consistent conclusions and sometimes, the results/coclusions are even controversy. In this review paper, starch fine molecular structural effects on the texture, aroma and starch digestion properties of cooked white rice were summarized followed by a detailed discussion of the relations between the fine molecular structures of amylopectin and amylose to deduce a more general conclusion of starch molecular structure-cooked rice property relations. It is expected that this review paper could provide useful information in terms of how to develop slowly digested rices with acceptable palatability.
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  • 文章类型: Journal Article
    目前,作为E3泛素连接酶的最大家族,Skp1-Cullin1-F-box(SCF)E3连接酶复合物已引起广泛关注。在SCF复合物中,Skp2,β-TrCP,和FBXW7对其结构和功能进行了广泛的研究。以前的研究表明Skp2,β-TrCP,和FBXW7在许多癌症中过表达。因此,SCFE3连接酶复合物已成为开发抗癌药物的重要靶点。在过去的几十年里,已经尝试了多种靶向SCFE3连接酶复合物的抗肿瘤抑制剂。然而,因为几乎没有SCFE3连接酶抑制剂通过临床试验,需要设计和合成新的抑制剂。这里,我们将介绍Skp2,β-TrCP的结构和功能,和FBXW7,它们与癌症发展的联系,相关的体外和体内活性,选择性,结构-活动关系,以及专利(2010年至今)中报道的针对这三种F-box蛋白的小分子抑制剂的治疗性或预防性应用。这些信息将有助于开发针对SCFE3泛素连接酶的药物,为未来的癌症治疗提供新的策略。
    Currently, as the largest family of E3 ubiquitin ligases, Skp1-Cullin 1-F-box (SCF) E3 ligase complexes have attracted extensive attention. Among SCF complexes, Skp2, β-TrCP, and FBXW7 have undergone extensive research on their structures and functions. Previous studies suggest Skp2, β-TrCP, and FBXW7 are overexpressed in numerous cancers. Thus, the SCF E3 ligase complex has become a significant target for the development of anti-cancer drugs. Over the past few decades, a variety of anti-tumor inhibitors targeting the SCF E3 ligase complex have been attempted. However, since almost none of the SCF E3 ligase inhibitors passed clinical trials, the design and synthesis of the new inhibitors are needed. Here, we will introduce the structure and function of Skp2, β-TrCP, and FBXW7, their connections with cancer development, the relevant in vitro and in vivo activities, selectivity, structure-activity relationships, and the therapeutic or preventive application of small molecule inhibitors targeting these three F-box proteins reported in the patent (2010-present). This information will help develop drugs targeting the SCF E3 ubiquitin ligase, providing new strategies for future cancer treatments.
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  • 文章类型: Journal Article
    肥胖被认为是各种代谢性疾病的重要危险因素。抑制人胰脂肪酶(hPL)可阻碍脂质的消化吸收,从而为肥胖治疗提供潜在的益处。蒽醌类化合物是一类应用广泛的天然和合成化合物。在这项研究中,评价了31种蒽醌对hPL的抑制作用。数据显示AQ7、AQ26和AQ27对hPL表现出显著的抑制活性,并表现出对其他已知丝氨酸水解酶的选择性。然后进一步分析了蒽醌与hPL的构效关系。通过抑制动力学发现AQ7是hPL的混合抑制作用,而AQ26和AQ27是有效的非竞争性抑制hPL。分子对接数据显示,AQ7,AQ26和AQ27都可以与hPL位点相关联。开发用于肥胖预防和治疗的hPL抑制剂可以使用这种新颖且有前景的先导化合物来简化。
    Obesity is acknowledged as a significant risk factor for various metabolic diseases, and the inhibition of human pancreatic lipase (hPL) can impede lipid digestion and absorption, thereby offering potential benefits for obesity treatment. Anthraquinones is a kind of natural and synthetic compounds with wide application. In this study, the inhibitory effects of 31 anthraquinones on hPL were evaluated. The data shows that AQ7, AQ26, and AQ27 demonstrated significant inhibitory activity against hPL, and exhibited selectivity towards other known serine hydrolases. Then the structure-activity relationship between anthraquinones and hPL was further analysed. AQ7 was found to be a mixed inhibition of hPL through inhibition kinetics, while AQ26 and AQ27 were effective non-competitive inhibition of hPL. Molecular docking data revealed that AQ7, AQ26, and AQ27 all could associate with the site of hPL. Developing hPL inhibitors for obesity prevention and treatment could be simplified with this novel and promising lead compound.
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