structural model

结构模型
  • 文章类型: Journal Article
    线粒体融合需要将四个双层依次合并为两个。外膜溶质载体蛋白SLC25A46与外膜和内膜动力蛋白家族GTPasesMfn1/2和Opa1相互作用。虽然已知SLC25A46水平会影响线粒体形态,SLC25A46如何与Mfn1/2和Opa1相互作用以调节膜融合尚不清楚。在这项研究中,我们使用交联质谱和AlphaFold2建模来识别介导SLC25A46与Opa1和Mfn2相互作用的界面。我们发现Opa1的束信号元件与SLC25A46相互作用,并提供了涉及SLC25A46胞质面的Mfn2相互作用的证据。我们验证了这些新识别的交互界面,并表明它们在线粒体网络维护中发挥作用。
    Mitochondrial fusion requires the sequential merger of four bilayers to two. The outer-membrane solute carrier protein SLC25A46 interacts with both the outer and inner-membrane dynamin family GTPases Mfn1/2 and Opa1. While SLC25A46 levels are known to affect mitochondrial morphology, how SLC25A46 interacts with Mfn1/2 and Opa1 to regulate membrane fusion is not understood. In this study, we use crosslinking mass-spectrometry and AlphaFold 2 modeling to identify interfaces mediating a SLC25A46 interactions with Opa1 and Mfn2. We reveal that the bundle signaling element of Opa1 interacts with SLC25A46, and present evidence of a Mfn2 interaction involving the SLC25A46 cytosolic face. We validate these newly identified interaction interfaces and show that they play a role in mitochondrial network maintenance.
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  • 文章类型: Journal Article
    Cdc14磷酸酶在结构和机械上与蛋白质酪氨酸磷酸酶(PTP)相关,但对主要由细胞周期蛋白依赖性激酶沉积的磷酸Ser-Pro-X-Lys/Arg位点进化出独特的特异性。这种专业化在真核生物中广泛保守。Cdc14活性位点的进化重新配置以选择性地适应phoSer-Pro可能需要对规范的PTP催化循环进行修饰。在研究酿酒酵母Cdc14时,我们在无序的C端发现了一个短序列,催化域的远端,模拟最佳底物。动力学分析表明,这种假底物结合活性位点并强烈刺激限速磷酸酶水解,我们将其命名为“类似底物的催化增强剂”(SLiCE)。SLiCE基序在所有Dikarya真菌Cdc14直向同源物中都有发现,并且含有不变的谷氨酰胺,我们建议通过类似基材的接触来定位,以帮助水解水的取向,类似于Cdc14缺乏的其他PTP中的保守活性位点谷氨酰胺。AlphaFold2预测显示,脊椎动物Cdc14直向同源物包含与活性位点结合的保守的C末端α螺旋。尽管显然与真菌序列无关,该基序还使底物状接触,并在催化袋中具有不变的谷氨酰胺。改变人Cdc14A和Cdc14B中的这些残基表明其通过与真菌基序相同的机制起作用。然而,真菌和脊椎动物SLiCE基序在功能上不可互换,阐明催化过程中潜在的活性位点差异。最后,我们证明真菌SLiCE基序是Cdc14活性的磷酸化调控靶标。我们的研究揭示了Cdc14磷酸酶中异常刺激的假底物基序的进化。
    Cdc14 phosphatases are related structurally and mechanistically to protein tyrosine phosphatases (PTPs) but evolved a unique specificity for phosphoSer-Pro-X-Lys/Arg sites primarily deposited by cyclin-dependent kinases. This specialization is widely conserved in eukaryotes. The evolutionary reconfiguration of the Cdc14 active site to selectively accommodate phosphoSer-Pro likely required modification to the canonical PTP catalytic cycle. While studying Saccharomyces cerevisiae Cdc14, we discovered a short sequence in the disordered C terminus, distal to the catalytic domain, which mimics an optimal substrate. Kinetic analyses demonstrated this pseudosubstrate binds the active site and strongly stimulates rate-limiting phosphoenzyme hydrolysis, and we named it \"substrate-like catalytic enhancer\" (SLiCE). The SLiCE motif is found in all Dikarya fungal Cdc14 orthologs and contains an invariant glutamine, which we propose is positioned via substrate-like contacts to assist orientation of the hydrolytic water, similar to a conserved active site glutamine in other PTPs that Cdc14 lacks. AlphaFold2 predictions revealed vertebrate Cdc14 orthologs contain a conserved C-terminal alpha helix bound to the active site. Although apparently unrelated to the fungal sequence, this motif also makes substrate-like contacts and has an invariant glutamine in the catalytic pocket. Altering these residues in human Cdc14A and Cdc14B demonstrated that it functions by the same mechanism as the fungal motif. However, the fungal and vertebrate SLiCE motifs were not functionally interchangeable, illuminating potential active site differences during catalysis. Finally, we show that the fungal SLiCE motif is a target for phosphoregulation of Cdc14 activity. Our study uncovered evolution of an unusual stimulatory pseudosubstrate motif in Cdc14 phosphatases.
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  • 文章类型: Journal Article
    传感器故障是导致永磁牵引传动系统(PMTDS)性能下降或功能丧失的最常见故障之一。为了快速诊断故障传感器,提出了一种基于结构分析的多传感器故障实时联合诊断方法。首先,基于船上有限的监测信号,利用结构分析方法建立了系统的结构化模型。使用Dulmage-Mendelsohn分解方法分析了故障传感器的隔离性和可检测性。其次,最小碰撞集方法用于计算最小超定方程组,将高阶系统模型转化为多个相关子系统模型,从而降低建模的复杂性和便于系统的实现。接下来,基于多个子系统模型构建残差向量,并利用各子系统模型和相关传感器之间的相关性设计了故障检测和隔离策略。基于在线故障数据记录的物理测试平台的验证结果表明,该方法能够实现PMTDS中故障的快速检测和多传感器故障的定位,具有较好的应用价值。
    Sensor faults are one of the most common faults that cause performance degradation or functional loss in permanent magnet traction drive systems (PMTDSs). To quickly diagnose faulty sensors, this paper proposes a real-time joint diagnosis method for multi-sensor faults based on structural analysis. Firstly, based on limited monitoring signals on board, a structured model of the system was established using the structural analysis method. The isolation and detectability of faulty sensors were analyzed using the Dulmage-Mendelsohn decomposition method. Secondly, the minimum collision set method was used to calculate the minimum overdetermined equation set, transforming the higher-order system model into multiple related subsystem models, thereby reducing modeling complexity and facilitating system implementation. Next, residual vectors were constructed based on multiple subsystem models, and fault detection and isolation strategies were designed using the correlation between each subsystem model and the relevant sensors. The validation results of the physical testing platform based on online fault data recordings showed that the proposed method could achieve rapid fault detection and the localization of multi-sensor faults in PMTDS and had a good application value.
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  • 文章类型: Journal Article
    在这项研究中,我们开发了一个量表来评估中国年轻运动员的情绪管理及其收益,分析情绪管理对其培训效率的影响。经过广泛的文献综述,我们使用AMOS结构方程模型软件开发了一个量表,用于评估情绪管理对年轻运动员训练效率的影响和益处。结果表明,青少年运动员的情绪管理训练及其效益可以分为五个维度:效益评价,情感认知,情感影响,情绪控制,和情绪调节。形式量表的内部一致性信度为0.895,每个子量表的内部一致性信度在0.734~0.901之间。分裂半信度为0.769,每个子量表的分裂半信度在0.623和0.864之间。KMO值为0.904,P=0.00(p<0.05),累积解释率为总方差的61.782%。量表项目的最低因子负荷为0.436,最高因子负荷为0.846。所有项目的共同程度在0.402至0.762之间,表明该量表具有良好的效度。SEM模型验证了该量表具有良好的结构效度。在水平之间观察到显着的相关差异。SEM结构方程模型分析结果表明,模型的NC=2.660(1 In this study, we developed a scale to evaluate emotion management and its benefits for young athletes in China, and to analyze the impact of emotion management on their training efficiency. Following an extensive literature review, we used AMOS structural equation model software to develop a scale for evaluating the effects and benefits of emotion management on young athletes\' training efficiency. Results showed that young athletes\' emotion management training and its benefits can be divided into five dimensions: benefit evaluation, emotional cognition, emotion influence, emotion control, and emotion regulation. The internal consistency reliability of the formal scale was 0.895, and the internal consistency reliability of each subscale was between 0.734 and 0.901. The split-half reliability was 0.769, and the split-half reliability of each subscale was between 0.623 and 0.864. The KMO value was 0.904, P = 0.00 (p < 0.05), and the cumulative interpretation rate was 61.782 % of the total variance. The lowest factor load of a scale item was 0.436, and the highest factor load was 0.846. The common degree of all items was between 0.402 and 0.762, indicating that the scale has good validity. A SEM model verified that the scale has good construct validity. Significant correlational differences were observed among the levels. The results of the SEM structural equation model analysis showed that the model\'s NC = 2.660 (1 < NC < 3 indicates that the model has a simple fit), PGFI = 0.722, PNFI = 0.699, IFI = 0.851, PRA = 0.927, RMR = 0.006, and RMSEA = 0.07, thus, these indexes reached the standard of excellent model fitting. The strongest correlation was found between emotional cognition and benefit evaluation (R = 0.690), and the weakest correlation was found between emotion influence and benefit evaluation (R = 0.079). These findings provide a basis for measuring the effect of emotion management on training efficiency in the training process of young athletes and offer a theoretical reference for their emotional development while in training.
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  • 文章类型: Journal Article
    血清淀粉样蛋白A(SAA)是一种高度保守的急性期蛋白,在急性炎症反应期间在激活多种促炎途径中起作用,通常用作炎症的生物标志物。通过改善脂质和胆固醇从损伤部位的清除,它与组织修复中的有益作用有关。在慢性炎症性疾病患者中,SAA水平升高可能导致基础疾病的严重程度增加.大多数循环SAA与脂蛋白结合,主要是高密度脂蛋白(HDL)。与HDL的相互作用不仅稳定了SAA,而且改变了其功能特性,可能是通过改变SAA上蛋白质-蛋白质相互作用位点的可及性。虽然高分辨率结构的无脂,或apo-,已经报道了SAA的形式,它们与HDL结合形式的蛋白质的关系,以及SAA与脂质结合的其他可能机制,尚未建立。这里,我们使用了多种生物物理技术,包括SAXS,TEM,SEC-MALS,天然凝胶电泳,戊二醛交联,和胰蛋白酶消化以表征SAA的无脂质和脂质结合形式。SAXS和TEM数据显示存在SAA的可溶性八聚体,其结构与无脂ApoA-I报道的环状结构相似。这些SAA八聚体代表无脂质SAA的先前未表征的结构,并且能够支架具有与ApoA-I形成的相似形态的脂质纳米盘。SAA-脂质纳米盘包含四个SAA分子,并且具有与无脂质SAA八聚体相似的外部尺寸,这表明,可能需要相对较少的构象重排来允许SAA与含有脂质的颗粒如HDL相互作用。这项研究提出了SAA-脂质相互作用的新模型,并提供了关于SAA如何稳定蛋白质-脂质纳米盘或甚至取代ApoA-I作为炎症期间HDL颗粒的支架的新见解。
    Serum amyloid A (SAA) is a highly conserved acute-phase protein that plays roles in activating multiple pro-inflammatory pathways during the acute inflammatory response and is commonly used as a biomarker of inflammation. It has been linked to beneficial roles in tissue repair through improved clearance of lipids and cholesterol from sites of damage. In patients with chronic inflammatory diseases, elevated levels of SAA may contribute to increased severity of the underlying condition. The majority of circulating SAA is bound to lipoproteins, primarily high-density lipoprotein (HDL). Interaction with HDL not only stabilizes SAA but also alters its functional properties, likely through altered accessibility of protein-protein interaction sites on SAA. While high-resolution structures for lipid-free, or apo-, forms of SAA have been reported, their relationship with the HDL-bound form of the protein, and with other possible mechanisms of SAA binding to lipids, has not been established. Here, we have used multiple biophysical techniques, including SAXS, TEM, SEC-MALS, native gel electrophoresis, glutaraldehyde crosslinking, and trypsin digestion to characterize the lipid-free and lipid-bound forms of SAA. The SAXS and TEM data show the presence of soluble octamers of SAA with structural similarity to the ring-like structures reported for lipid-free ApoA-I. These SAA octamers represent a previously uncharacterized structure for lipid-free SAA and are capable of scaffolding lipid nanodiscs with similar morphology to those formed by ApoA-I. The SAA-lipid nanodiscs contain four SAA molecules and have similar exterior dimensions as the lipid-free SAA octamer, suggesting that relatively few conformational rearrangements may be required to allow SAA interactions with lipid-containing particles such as HDL. This study suggests a new model for SAA-lipid interactions and provides new insight into how SAA might stabilize protein-lipid nanodiscs or even replace ApoA-I as a scaffold for HDL particles during inflammation.
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  • 文章类型: Journal Article
    为热固性聚合物的循环热机械载荷开发粘弹性模型是本研究的主要目标。该模型包括残余热应力的记忆,并且可以考虑许多加载周期中的应力累积。通过考虑应力积累,我们可以改进预测,并了解热固性聚合物在循环热机械载荷下的应力-应变状态如何变化。通过实验验证验证了该方法在实际工程场景中的适用性。实验表明,热固性聚合物可以在使用过程中的加热和机械载荷循环过程中积累应力。将建模结果与实验结果进行了比较。结果导致该模型应用于本研究中的环氧树脂等热固性聚合物的方式进行了校正。校正后的结果与循环热机械载荷下应力的实验测量结果非常吻合,差异只有1%到6%。
    Developing a viscoelastic model for the cyclic thermomechanical loading of thermosetting polymers is the main goal of this study. The model includes memory for residual thermal stresses and can consider stress accumulation across many loading cycles. By considering stress accumulation, we can improve predictions and understand how thermosetting polymers\' stress-strain state changes under cyclic thermomechanical loading. This approach was validated through experimental verification to ensure its applicability in practical engineering scenarios. The experiment showed that the thermosetting polymer can accumulate stress during cycles of heating and mechanical loading during use. The results of the modeling and experiment are compared. The results have led to corrections in the way this model is applied to thermosetting polymers like the epoxy resin in this study. The corrected results matched well with the experimental measurements of stress under cyclic thermomechanical load, with a difference of only 1 to 6%.
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  • 文章类型: Journal Article
    青蛙启发的跳跃机器人是生物力学和仿生学领域的一个有趣话题。然而,由于青蛙的爆发性运动和大范围的关节运动,很难使它们的结构完全仿生。为了获得最优的跳跃运动模型,肌肉骨骼结构,跳跃运动机构,首先系统分析了青蛙的特性,得到相应的结构参数和运动学参数。基于生物学特性,创建关节骨结构的模型,可以完全描述青蛙运动的特征。根据影响青蛙跳跃运动的各种因素,添加质量和约束,将复杂的生物关节结构简化为四种不同的跳跃结构模型。跳跃的地面反作用力,速度,和质心的位移,关节扭矩,通过ADAMS仿真获得这4种模型的其他运动信息,揭示青蛙的跳跃运动机理和影响因素。最后,对各种运动特征进行了分析和比较,确定了综合指标的最优结构模型,为青蛙式跳跃机器人的设计提供了理论依据。
    The frog-inspired jumping robot is an interesting topic in the field of biomechanics and bionics. However, due to the frog\'s explosive movement and large range of joint motion, it is very difficult to make their structure completely bionic. To obtain the optimal jumping motion model, the musculoskeletal structure, jumping movement mechanism, and characteristics of frogs are first systematically analyzed, and the corresponding structural and kinematic parameters are obtained. Based on biological characteristics, a model of the articular bone structure is created, which can fully describe the features of frog movement. According to the various factors affecting the frog\'s jumping movement, mass and constraints are added, and the complex biological joint structure is simplified into four different jumping structure models. The jumping ground reaction force, velocity, and displacement of the center of mass, joint torque, and other motion information of these four models are obtained through ADAMS simulation to reveal the jumping movement mechanism and the influencing factors of frogs. Finally, various motion features are analyzed and compared to determine the optimal structural model of the comprehensive index, which provides a theoretical basis for the design of the frog-inspired jumping robot.
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  • 文章类型: Preprint
    我们鉴定了一种新的SCN5A变体,E171Q,在新生儿中,异位非常频繁,射血分数降低,在氟卡尼抑制心律失常后恢复正常。该临床表现与多灶性异位Purkinje相关的过早收缩(MEPPC)一致。MEPPC的大多数先前报道都涉及SCN5A变体,例如R222Q,它们中和通道蛋白NaV1.5的S4电压传感器螺旋中的正电荷,并产生门控孔电流。
    E171是位于NaV1.5结构域I的S2跨膜螺旋中的高度保守的带负电荷的残基。E171是门控电荷转移中心的关键组成部分,一个区域被认为是S4电压传感器螺旋正常运动的关键。我们使用异源表达,CRISPR编辑的诱导多能干细胞衍生的心肌细胞(iPSC-CM),和分子动力学模拟证明E171Q产生了门控孔电流,被低浓度的氟卡尼抑制(IC50=0.71±0.07µM)。R222Q将激活和失活的电压依赖性朝负方向移动,但我们观察到E171Q的正移动。E171QiPSC-CM表现出异常的自发活动和延长的动作电位。分子动力学模拟表明,R222Q和E171Q蛋白均产生充满水的渗透途径,该途径是门控孔电流产生的基础。
    先前鉴定的产生门控孔电流的MEPPC相关变体位于S4电压传感器中带正电荷的残基中,并在激活和失活的电压依赖性中产生负偏移。我们证明,中和门控电荷转移中心中带负电荷的S2螺旋残基会产生正位移,但会产生门控孔途径。这些发现暗示门控孔途径是MEPPC的主要功能和结构决定因素,并扩大了与电压门控离子通道中门控孔相关疾病相关的变体的范围。
    UNASSIGNED: We identified a novel SCN5A variant, E171Q, in a neonate with very frequent ectopy and reduced ejection fraction which normalized after arrhythmia suppression by flecainide. This clinical picture is consistent with multifocal ectopic Purkinje-related premature contractions (MEPPC). Most previous reports of MEPPC have implicated SCN5A variants such as R222Q that neutralize positive charges in the S4 voltage sensor helix of the channel protein NaV1.5 and generate a gating pore current.
    UNASSIGNED: E171 is a highly conserved negatively-charged residue located in the S2 transmembrane helix of NaV1.5 domain I. E171 is a key component of the Gating Charge Transfer Center, a region thought to be critical for normal movement of the S4 voltage sensor helix. We used heterologous expression, CRISPR-edited induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs), and molecular dynamics simulations to demonstrate that E171Q generates a gating pore current, which was suppressed by a low concentration of flecainide (IC50 = 0.71±0.07 µM). R222Q shifts voltage dependence of activation and inactivation in a negative direction but we observed positive shifts with E171Q. E171Q iPSC-CMs demonstrated abnormal spontaneous activity and prolonged action potentials. Molecular dynamics simulations revealed that both R222Q and E171Q proteins generate a water-filled permeation pathway that underlies generation of the gating pore current.
    UNASSIGNED: Previously identified MEPPC-associated variants that create gating pore currents are located in positively-charged residues in the S4 voltage sensor and generate negative shifts in the voltage dependence of activation and inactivation. We demonstrate that neutralizing a negatively charged S2 helix residue in the Gating Charge Transfer Center generates positive shifts but also create a gating pore pathway. These findings implicate the gating pore pathway as the primary functional and structural determinant of MEPPC and widen the spectrum of variants that are associated with gating pore-related disease in voltage-gated ion channels.
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  • 文章类型: Journal Article
    英语作为外语(EFL)教育越来越依赖于在线学习,需要对影响学习经历的关键因素有细微差别的理解。本研究调查了在线学习自我效能感之间的复杂关系,在线自我调节学习,英语的非正式数字学习(IDLE),和在线课程满意度在EFL学习者的独特背景下。
    该研究涉及来自中国各国立大学的563名中级大学生。采用结构方程模型(SEM)对数据进行分析,提供对已识别变量之间关系的全面洞察。
    结果揭示了重要的见解。在线学习自我效能感和IDLE对在线课程满意度均表现出直接和积极的影响。此外,该研究发现,在线自我调节学习在在线学习自我效能感和IDLE与在线课程满意度之间的联系中起着部分中介作用。这种中介意味着学习者的自我调节行为显着影响自我效能感和非正式数字语言学习体验如何影响在线课程的整体满意度。
    这些发现强调了培养学习者自我效能信念的关键作用,培养IDLE,并在在线语言学习领域推广有效的自我调节学习策略。这些举措有助于提高在线课程学习者的满意度和成功。
    这些发现对EFL教学的影响是巨大的。通过强调自我效能感的重要性,慢车,和自我调节的学习策略,教育工作者可以为EFL学生创造更令人满意和成功的在线学习体验做出重大贡献。
    UNASSIGNED: English as a Foreign Language (EFL) education increasingly relies on online learning, necessitating a nuanced understanding of crucial factors impacting learning experiences. This research investigates the intricate relationships among online learning self-efficacy, online self-regulated learning, informal digital learning of English (IDLE), and online course satisfaction within the unique context of EFL learners.
    UNASSIGNED: The study involved 563 intermediate college students from various national universities in China. Structural Equation Modeling (SEM) was employed to analyze the data, providing comprehensive insights into the relationships among the identified variables.
    UNASSIGNED: The results revealed significant insights. Both online learning self-efficacy and IDLE exhibited direct and positive influences on online course satisfaction. Furthermore, the study uncovered that online self-regulated learning acted as a partial mediator in the connection between online learning self-efficacy and IDLE with online course satisfaction. This mediation implies that learners\' self-regulatory behaviors significantly affect how self-efficacy and informal digital language learning experiences impact overall satisfaction with online courses.
    UNASSIGNED: The findings highlight the pivotal role of nurturing learners\' self-efficacy beliefs, fostering IDLE, and promoting effective self-regulated learning strategies in the realm of online language learning. These initiatives are instrumental in enhancing learners\' satisfaction and success in online courses.
    UNASSIGNED: The implications of these findings for EFL instruction are substantial. By emphasizing the importance of self-efficacy, IDLE, and self-regulated learning strategies, educators can significantly contribute to creating more satisfying and successful online learning experiences for EFL students.
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  • 文章类型: Journal Article
    线粒体融合需要将四个双层依次合并为两个。外膜溶质载体蛋白SLC25A46与外膜和内膜动力蛋白家族GTPasesMfn1/2和Opa1相互作用。虽然已知SLC25A46水平会影响线粒体形态,SLC25A46如何与Mfn1/2和Opa1相互作用以调节膜融合尚不清楚。在这项研究中,我们使用交联质谱和AlphaFold2建模来识别介导SLC25A46-Opa1-Mfn1/2复合物的界面。我们发现Opa1的束信号元件与SLC25A46相互作用,Mfn2的螺旋重复1区与SLC25A46N端相互作用。我们验证了这些新识别的交互界面,并表明它们在线粒体网络维护中发挥作用。
    Mitochondrial fusion requires the sequential merger of four bilayers to two. The outer-membrane solute carrier protein SLC25A46 interacts with both the outer and inner-membrane dynamin family GTPases Mfn1/2 and Opa1. While SLC25A46 levels are known to affect mitochondrial morphology, how SLC25A46 interacts with Mfn1/2 and Opa1 to regulate membrane fusion is not understood. In this study, we use crosslinking mass-spectrometry and AlphaFold 2 modeling to identify interfaces mediating a SLC25A46 interactions with Opa1 and Mfn2. We reveal that the bundle signaling element of Opa1 interacts with SLC25A46, and present evidence of a Mfn2 interaction involving the SLC25A46 cytosolic face. We validate these newly identified interaction interfaces and show that they play a role in mitochondrial network maintenance.
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