spectroscopic techniques

  • 文章类型: Journal Article
    一系列新的手性4,5-二氢-1H-[1,2,4]-三唑啉分子,具有β-β-吡喃葡萄糖苷附属物,通过各种肼酰氯和碳水化合物席夫碱之间的1,3-偶极环加成反应合成。通过高分辨率质谱(HRMS)和振动光谱法鉴定了分离的对映体纯的三唑啉(8a-j)。随后,通过NMR光谱技术阐明了它们的溶液结构。衍生物8b的单晶X射线分析为该化合物的3-D结构提供了明确的证据,并揭示了晶格中重要的分子间力。此外,它确认了新生成的立体声中心的(S)配置。研究了选定的目标化合物在60种癌细胞系中的抗肿瘤活性,衍生物8c显示出最高的效力,特别是针对白血病。此外,观察到取代基依赖性抗真菌和抗菌行为。
    A new series of chiral 4,5-dihydro-1H-[1,2,4]-triazoline molecules, featuring a β-ᴅ-glucopyranoside appendage, were synthesized via a 1,3-dipolar cycloaddition reaction between various hydrazonyl chlorides and carbohydrate Schiff bases. The isolated enantiopure triazolines (8a-j) were identified through high-resolution mass spectrometry (HRMS) and vibrational spectroscopy. Subsequently, their solution structures were elucidated through NMR spectroscopic techniques. Single-crystal X-ray analysis of derivative 8b provided definitive evidence for the 3-D structure of this compound and revealed important intermolecular forces in the crystal lattice. Moreover, it confirmed the (S)-configuration at the newly generated stereo-center. Selected target compounds were investigated for anti-tumor activity in 60 cancer cell lines, with derivative 8c showing the highest potency, particularly against leukemia. Additionally, substituent-dependent anti-fungal and anti-bacterial behavior was observed.
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  • 文章类型: Journal Article
    最常见的皮肤病包括湿疹,牛皮癣,痤疮,和真菌感染。通常没有有效的治疗方法。抗微生物药物耐药性的增加促使我们寻找新的,安全,和有效的治疗方法。在这些有趣的候选物中,有来自用特定乳酸菌或红茶菌培养物发酵的牛奶的肽。这是生物活性肽的潜在宝库。本文讨论了其中的四个方面。它们与锌和铜离子的相互作用,众所周知,它们可以改善皮肤的健康,用电位法表征,MS,ITC,和光谱学方法,并分析了它们的细胞抑制电位。结果表明,它们对人类细胞是安全的,可以单独使用或与铜配合用于进一步测试,作为皮肤病的潜在治疗剂。
    The most common skin diseases include eczema, psoriasis, acne, and fungal infections. There is often no effective cure for them. Increasing antimicrobial drug resistance prompts us to search for new, safe, and effective therapeutics. Among such interesting candidates are peptides derived from milk fermented with specific lactic acid bacteria or with kombucha cultures, which are a potential treasure trove of bioactive peptides. Four of them are discussed in this article. Their interactions with zinc and copper ions, which are known to improve the well-being of the skin, were characterized by potentiometry, MS, ITC, and spectroscopic methods, and their cytostatic potential was analyzed. The results suggest that they are safe for human cells and can be used alone or in complexes with copper for further testing as potential therapeutics for skin diseases.
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  • 文章类型: Journal Article
    线性十一肽KKLFKKILKYL-NH2(BP100)突出了其对革兰氏阴性菌的抗菌活性和低毒性。这些优良的生物学特性促使人们对其作用机理进行研究,这是使用光谱技术进行的,生物物理分析,显微镜,和分子动力学模拟。研究是在不同的膜环境中进行的,如阴离子,两性离子,和混合膜,以及在囊泡(LUVs和GUV)和细菌中。研究结果表明,BP100表现出对阴离子膜的偏好,其作用机制涉及电荷中和和膜透化。在这些膜中,BP100从水中的非结构化状态过渡到轴平行于表面的α-螺旋。MD模拟表明,在与膜的静电相互作用后,BP100翻转,促进其疏水性面插入膜双层。因此,BP100采用几乎垂直的跨膜取向,赖氨酸侧链在膜的两侧浮潜。由于旋转,BP100诱导膜变薄和缓慢的脂质扩散,并促进水的渗透,特别是在阴离子脂质膜中。这些研究指向地毯状机制,并与BP100所述的生物活性概况保持一致。这篇综述涵盖了2009年至2023年之间发表的关于BP100作用机制的所有研究。
    The linear undecapeptide KKLFKKILKYL-NH2 (BP100) highlights for its antibacterial activity against Gram-negative bacteria and its low toxicity. These excellent biological properties prompted the investigation of its mechanism of action, which were undertaken using spectroscopic techniques, biophysical analysis, microscopy, and molecular dynamic simulations. Studies were conducted in different membrane environments, such as anionic, zwitterionic, and mixed membranes, as well as in vesicles (LUVs and GUVs) and bacteria. The findings suggest that BP100 exhibits a preference for anionic membranes, and its mechanism of action involves charge neutralization and membrane permeabilization. In these membranes, BP100 transitions from an unstructured state in water to an α-helix with the axis parallel to the surface. MD simulations suggest that after electrostatic interaction with the membrane, BP100 flips, facilitating the insertion of its hydrophobic face into the membrane bilayer. Thus, BP100 adopts an almost vertical transmembrane orientation with lysine side chains snorkelling on both sides of the membrane. As a result of the rotation, BP100 induces membrane thinning and slow lipid diffusion and promotes water penetration, particularly in anionic lipid membranes. These investigations pointed towards a carpet-like mechanism and are aligned with the biological activity profile described for BP100. This review covers all the studies carried out on the mechanism of action of BP100 published between 2009 and 2023.
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  • 文章类型: Journal Article
    背景:藤黄酸(GA)是藤黄属物种树脂的天然产物,在诱导细胞凋亡方面表现出显著的活性。它可能是一种有前途的先导化合物,用于设计和合成新的抗癌药物。
    目的:本研究的目的是设计具有更好抗癌活性的新型含氮GA衍生物,并研究引入不同含氮基团对GA活性的影响。
    方法:通过30-羧酸酯的酯化或酰胺化来合成设计的15种衍生物。合成化合物通过不同的光谱技术进行表征,包括X射线单晶衍射,MS和NMR。使用甲基噻唑基四唑(MTT)测试,在体外评估了设计的衍生物对A549,HepG-2和MCF-7细胞系的细胞毒性活性。
    结果:成功合成并建立了15种含氮GA衍生物。根据IC50值,化合物9、10、11和13对A549、HepG-2、MCF-7细胞株的抑制作用强于GA,而9是最具活性的化合物,IC50值为0.64-1.49μM。大多数具有C-30酯化的GA衍生物,包括氰基苯环,通常比嘧啶基取代的衍生物弱。此外,GA的C-30与含氮基团之间的烷基接头长度对A549,HepG-2和MCF-7细胞系产生不同的影响。
    结论:构效关系结果表明,芳香取代基和接头长度对提高抗癌活性有重要作用,而具有嘧啶取代基和C-C-C接头的化合物9是对测试细胞系最具活性的衍生物,并且是进一步开发的有前途的抗癌剂。
    BACKGROUND: Gambogic acid (GA) is a natural product from the resin of the Garcinia species, which showed significant activity in the induction of apoptosis. .t can be one promising lead compound for the design and synthesis of new anticancer drugs.
    OBJECTIVE: The objective of the current study is to design novel nitrogen-contained GA derivatives with better anti-cancer activities and study the effect of the introduction of different nitrogen-contained groups on the activity of GA.
    METHODS: The designed 15 derivatives were synthesized via esterification or amidation of 30-carboxylate. The synthetic compounds were characterized via different spectroscopic techniques, including X-ray single crystal diffraction, MS and NMR. The cytotoxic activity of the designed derivatives was evaluated in vitro against A549, HepG-2, and MCF-7 cell lines using methyl thiazolyl tetrazolium (MTT) test.
    RESULTS: 15 nitrogen-contained GA derivatives were successfully synthesized and established. Based on the IC50 values, compounds 9, 10, 11 and 13 showed stronger inhibitory effects on A549, HepG-2, MCF-7 cell lines than GA, while 9 is the most active compound with IC50 value of 0.64-1.49 μM. Most derivatives of GA with esterification of C-30 including cyano-benzene ring were generally weaker than those of pyrimidinyl-substituted derivatives. In addition, length of alkyl linkers between C-30 of GA and nitrogen-contained group produced different effects on A549, HepG-2 and MCF-7 cell lines.
    CONCLUSIONS: The structure-activity relationship results show that aromatic substituent and linker length play important roles to improve the anticancer activities, while compound 9 with pyrimidine substituent and C-C-C linkers is the most active derivative against tested cell lines, and is a promising anti-cancer agent for further development.
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  • 文章类型: Journal Article
    在生理条件下,光谱技术以及分子对接模拟已用于研究含吡啶-2,6-二羧酸(PDCA)的Cu(II)配合物与二乙醇胺(DEA)配体之间的结合相互作用机理,[Cu(DEA)(PDCA)]和人血清白蛋白(HSA)。在存在Cu(II)络合物的情况下,蛋白质的UV光谱变化表明形成了具有特定新结构的蛋白质-Cu(II)络合物缀合物。Cu(II)配合物通过静态机制猝灭HSA的固有荧光,其中范德华相互作用以及氢键是基本的结合力。通过华法林和布洛芬位点探针进行的置换实验预测Cu(II)复合物位于亚结构域IIA中,HSA的Sudlow位点1。分子对接结果显示与实验数据非常相似。由RamaswamyH.Sarma沟通。
    Under physiological conditions, spectroscopic techniques as well as molecular docking simulation have been used to investigate the binding interaction mechanism between Cu(II) complex containing Pyridine-2,6-dicarboxylic acid (PDCA) and Diethanolamine (DEA) ligands, [Cu(DEA)(PDCA)] and human serum albumin (HSA). UV spectral changes of protein in the presence of the Cu(II) complex suggested the formation of a Protein-Cu(II) complex conjugate with specific new structure. The Cu(II) complex quenches the intrinsic fluorescence of the HSA via a static mechanism in which van der Waals interactions along with hydrogen bonds are fundamental binding forces. Displacement experiments performed by warfarin and ibuprofen site probes predict that the Cu(II) complex is located in subdomain IIA, Sudlow site 1 of HSA. Molecular docking results showed close resemblance with experimental data.Communicated by Ramaswamy H. Sarma.
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  • 文章类型: Journal Article
    稻米是世界三分之二人口的主食,全世界有一百多个国家种植。由于规模大,容易掺假。此外,稻米的品质属性是影响流通和价格的重要因素,也越来越受到重视。光谱学和化学计量学的结合可以快速检测大米的真实性和品质属性。本文介绍了七种光谱技术与化学计量学相结合在水稻工业中的应用。很长一段时间,近红外光谱法和线性化学计量学方法(例如,PLSR和PLS-DA)已广泛应用于水稻产业。尽管一些研究取得了良好的准确性,许多研究中的模型准确率超过90%。然而,使用多种光谱技术更有可能获得更高的准确性和稳定性,非线性化学计量学方法,和关键波长选择算法。未来的研究应该开发更大的水稻数据库,根据水稻的类型,包括更多的水稻品种和更多的水稻,然后结合各种光谱技术,非线性化学计量学方法,和关键波长选择算法。本文为更高效、准确地测定稻米品质和真伪提供了参考。
    Rice is a staple food for two-thirds of the world\'s population and is grown in over a hundred countries around the world. Due to its large scale, it is vulnerable to adulteration. In addition, the quality attribute of rice is an important factor affecting the circulation and price, which is also paid more and more attention. The combination of spectroscopy and chemometrics enables rapid detection of authenticity and quality attributes in rice. This article described the application of seven spectroscopic techniques combined with chemometrics to the rice industry. For a long time, near-infrared spectroscopy and linear chemometric methods (e.g., PLSR and PLS-DA) have been widely used in the rice industry. Although some studies have achieved good accuracy, with models in many studies having greater than 90% accuracy. However, higher accuracy and stability were more likely to be obtained using multiple spectroscopic techniques, nonlinear chemometric methods, and key wavelength selection algorithms. Future research should develop larger rice databases to include more rice varieties and larger amounts of rice depending on the type of rice, and then combine various spectroscopic techniques, nonlinear chemometric methods, and key wavelength selection algorithms. This article provided a reference for a more efficient and accurate determination of rice quality and authenticity.
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  • 文章类型: Journal Article
    评估乳腺癌的区域淋巴结状态具有重要的分期和预后价值。尽管正式的组织学检查是目前公认的护理标准,光学成像技术在疾病诊断中显示出有希望的结果。在本文中,我们回顾了6种光谱技术,并重点介绍了它们作为乳腺癌淋巴结评估的替代工具的用途.弹性散射光谱(ESS)似乎提供了一个简单的,成本效益高,术中诊断乳腺癌淋巴结转移的可重复性方法。光学相干断层扫描(OCT)提供高分辨率的组织扫描,随着一个短的数据采集时间。然而,它相对昂贵且实验复杂。拉曼光谱被证明是鉴定恶性腋窝淋巴结的高度准确的方法,并在头颈部癌症的背景下得到了进一步的验证。尽管如此,它仍然很耗时。近红外荧光成像(NIRF)和漫反射光谱(DFS)具有显著的优势,如深组织渗透和效率。傅里叶变换红外光谱(FTIR)是一种有前途的方法,但有明显的缺点。尽管如此,只有关于其临床用于癌淋巴结检测的轶事报道。我们的结果表明,光学成像方法可以创建信息丰富且快速的工具,以有效地指导手术决策。
    Assessment of regional lymph node status in breast cancer is of important staging and prognostic value. Even though formal histological examination is the currently accepted standard of care, optical imaging techniques have shown promising results in disease diagnosis. In the present article, we review six spectroscopic techniques and focus on their use as alternative tools for breast cancer lymph node assessment. Elastic scattering spectroscopy (ESS) seems to offer a simple, cost-effective, and reproducible method for intraoperative diagnosis of breast cancer lymph node metastasis. Optical coherence tomography (OCT) provides high-resolution tissue scanning, along with a short data acquisition time. However, it is relatively costly and experimentally complex. Raman spectroscopy proves to be a highly accurate method for the identification of malignant axillary lymph nodes, and it has been further validated in the setting of head and neck cancers. Still, it remains time-consuming. Near-infrared fluorescence imaging (NIRF) and diffuse reflectance spectroscopy (DFS) are related to significant advantages, such as deep tissue penetration and efficiency. Fourier-transform infrared spectroscopy (FTIR) is a promising method but has significant drawbacks. Nonetheless, only anecdotal reports exist on their clinical use for cancerous lymph node detection. Our results indicate that optical imaging methods can create informative and rapid tools to effectively guide surgical decision-making.
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  • 文章类型: Journal Article
    利用光谱和分子对接技术在几种葡萄糖(Glc)浓度下研究了糖尿病患者血红蛋白(Hb)与双酚A(BPA)的相互作用机制以及与健康人的差异,用牛血红蛋白(BHb)代替Hb。发现Glc可以与BHb-BPA相互作用并影响其分子结构,导致BHb-BPA中酪氨酸(Tyr)和色氨酸(Trp)的微环境改变。还发现Glc可以单独与BHb结合,在BHb-BPA复合物中,其对BHb分子结构的影响弱于对BHb结构的影响。圆二色性(CD)和傅立叶变换红外光谱(FTIR)的结果表明,Glc导致BHb-BPA的α-螺旋含量增加,β-折叠含量减少1.5-1.9%和3.1%,分别。分子对接结果表明,Glc通过氢键和疏水键与BHb-BPA结合,结合的位置不同于Glc单独与BHb结合的位置,这可能归因于BPA影响BHb的蛋白质分子结构并对BHb与Glc的结合有影响。本研究为不同血糖水平人群BPA的体内毒性机制研究提供了一定的理论依据。
    The interaction mechanism of hemoglobin (Hb) with bisphenol A (BPA) in diabetic patients and the difference with healthy people have been studied using spectroscopic and molecular docking techniques at several glucose (Glc) concentration, with bovine hemoglobin (BHb) instead of Hb. It is found that Glc can interact with BHb-BPA and affect its molecular structure, resulting in an altered microenvironment for tyrosine (Tyr) and tryptophan (Trp) in BHb-BPA. It is also found that Glc can bind to BHb alone, and its effect on the molecular structure of BHb is weaker than that on the structure of BHb in BHb-BPA complex. The results of circular dichroism (CD) and Fourier transform infrared spectroscopy (FTIR) indicate that Glc causes an increase in the content of the α-helix and a decrease in that of the β-sheet of BHb-BPA by 1.5-1.9% and 3.1%, respectively. The results of molecular docking show that Glc binds to BHb-BPA through hydrogen and hydrophobic bonds, and the position of binding differs from that of Glc binding to BHb alone, which may be attributed to the fact that BPA affects the protein molecular structure of BHb and has an effect on the binding of BHb to Glc. This study provides some theoretical basis for the mechanism of BPA toxicity in vivo for people with different blood glucose levels.
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  • 文章类型: Journal Article
    双酚A(BPA)是一种内分泌干扰化合物,BPA与载体蛋白的结合机制受到广泛关注。卤素取代可以显着影响BPA的性质,对人体健康产生各种影响。这里,我们选择四溴双酚A(TBBPA)和四氯双酚A(TCBPA)来研究不同卤素取代的BPAs与人血清白蛋白(HSA)之间的相互作用。TBBPA/TCBPA自发占据位点I并与HSA形成稳定的二元复合物。与TCBPA相比,TBBPA对HSA具有较高的结合亲和力。与TCBPA相比,不同卤素取代基对BPA带负电荷的表面积的影响是TBBPA与HSA的结合亲和力较高的重要原因。氢键和范德华力在TCBPA-HSA复合物中至关重要,而TBBPA-HSA复合物形成的主要驱动因素是疏水相互作用。此外,TBBPA/TCBPA的存在改变了HSA的二级结构。发现氨基酸残基如Lys199、Lys195、Phe211、Arg218、His242、Leu481和Trp214在BPA化合物和HSA之间的结合过程中起关键作用。此外,卤素取代基的存在促进了BPA化合物与HSA的结合。
    Bisphenol A (BPA) is an endocrine-disrupting compound, and the binding mechanism of BPA with carrier proteins has drawn widespread attention. Halogen substitutions can significantly impact the properties of BPA, resulting in various effects for human health. Here, we selected tetrabromobisphenol A (TBBPA) and tetrachlorobisphenol A (TCBPA) to investigate the interaction between different halogen-substituted BPAs and human serum albumin (HSA). TBBPA/TCBPA spontaneously occupied site I and formed stable binary complexes with HSA. Compared to TCBPA, TBBPA has higher binding affinity to HSA. The effect of different halogen substituents on the negatively charged surface area of BPA was an important reason for the higher binding affinity of TBBPA to HSA compared to TCBPA. Hydrogen bonds and van der Waals forces were crucial in the TCBPA-HSA complex, while the main driving factor for the formation of the TBBPA-HSA complex was hydrophobic interactions. Moreover, the presence of TBBPA/TCBPA changed the secondary structure of HSA. Amino acid residues such as Lys199, Lys195, Phe211, Arg218, His242, Leu481, and Trp214 were found to play crucial roles in the binding process between BPA compounds and HSA. Furthermore, the presence of halogen substituents facilitated the binding of BPA compounds with HSA.
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  • 文章类型: Journal Article
    本研究的主要目的是使用光谱技术和热重分析(TGA)作为替代方法,为植物结构表征找到相关的分析指纹。特别针对用叶面肥配方中包含的硒面包师酵母酒糟配方(Se-VF)处理的白菜。研究的假设是,与对照相比,Se-VF会引起显著的结构变化,分析证实富硒白菜作为营养蔬菜的生物强化,特别是施用的Se-VF制剂对田间生长的卷心菜的植物生物刺激作用。TGA证明了处理过的卷心菜叶中分子结构单元的结构转变。处理后灰分残留量增加,表明叶片中矿物质的积累增加。X射线衍射(XRD)和傅立叶变换红外光谱(FTIR)证明了卷心菜的果胶-Iα-纤维素结构在叶片结晶度方面彼此相关。FTIR分析表明未酯化的果胶和可能的(硒代)芥子油苷的积累以及氢键网络的增加。用Se-VF制剂处理引起内叶的可溶性纤维显着增加,伴随着不溶性纤维的减少。可溶性/不溶性纤维的比率与通过XRD确定的结晶度和FTIR数据相关。所采用的分析技术可以作为研究新农业技术实践效果的快速方法找到实际应用。而在我们的具体案例研究中,他们揭示了Se-VF配方处理的植物生物刺激剂特有的作用:增强的矿物质利用率和改善的品质性状。
    The main aim of this study is to find relevant analytic fingerprints for plants\' structural characterization using spectroscopic techniques and thermogravimetric analyses (TGAs) as alternative methods, particularized on cabbage treated with selenium-baker\'s yeast vinasse formulation (Se-VF) included in a foliar fertilizer formula. The hypothesis investigated is that Se-VF will induce significant structural changes compared with the control, analytically confirming the biofortification of selenium-enriched cabbage as a nutritive vegetable, and particularly the plant biostimulant effects of the applied Se-VF formulation on cabbage grown in the field. The TGA evidenced a structural transformation of the molecular building blocks in the treated cabbage leaves. The ash residues increased after treatment, suggesting increased mineral accumulation in leaves. X-ray diffraction (XRD) and Fourier-transform infrared spectroscopy (FTIR) evidenced a pectin-Iα-cellulose structure of cabbage that correlated with each other in terms of leaf crystallinity. FTIR analysis suggested the accumulation of unesterified pectin and possibly (seleno) glucosinolates and an increased network of hydrogen bonds. The treatment with Se-VF formulation induced a significant increase in the soluble fibers of the inner leaves, accompanied by a decrease in the insoluble fibers. The ratio of soluble/insoluble fibers correlated with the crystallinity determined by XRD and with the FTIR data. The employed analytic techniques can find practical applications as fast methods in studies of the effects of new agrotechnical practices, while in our particular case study, they revealed effects specific to plant biostimulants of the Se-VF formulation treatment: enhanced mineral utilization and improved quality traits.
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