species group

物种组
  • 文章类型: Journal Article
    Austrelatuspapuensis组是最近描述的AustrelatusShaverdo等人的新几内亚代表的第二个物种组。,2023年。该组主要由正中叶背侧硬岩的明显鳞片和/或棘突状表面结构定义。该物种组已经包含四个描述的物种和42个新物种以及一个在这里处理的亚种:Austrelatusaiyurensisp。11月。,A.asteiossp.11月。,A.bewanienissp.11月。,A.bosaviensisssp.11月。,A.bundunensisssp.11月。,A.centralensisssp.11月。,A.craterensissp.11月。,A.装饰.11月。,A.dekaisp.11月。,A.epicharissp.11月。,A.flavocapitatussp.11月。,A.fuscussp.11月。,A.herzogenissp.11月。,A.inconstanssp.11月。,A.iriatoisp.11月。,A.kalibumisp.11月。,A.kebarenissp.11月。,A.kokodensissp.11月。,A.leptossp.11月。,A.lolokisp.11月。,A.lopintolensissp.11月。,A.madangensissp.11月。,A.maindaisp.11月。,A.mamberamosp.11月。,A.mianminensissp.11月。,A.miltokareNossp.11月。,A.noiadisp.11月。,A.normanbyenssp.11月。,A.ohusp.11月。,A.posmanisp.11月。,A.procerussp.11月。,A.pseudogestroisp.11月。,A.pseudomianminissp.11月。,A.robustussp.11月。,A.sarartisp.11月。,A.sumokedisp.11月。,A.wanangenssp.11月。,A.wasiorenssp.11月。,A.wasurenissp.11月。,A.weigelisp.11月。,A.yamurensissp.11月。,A.eretuarsp.11月。,A.xanthocephalusnabirissssp.11月。提供了该组新几内亚物种的清单和识别键,并说明了重要的诊断特征。给出了有关物种分布和habiat偏好的数据。
    The Austrelatuspapuensis group is the second species group of the New Guinean representatives of the recently described genus AustrelatusShaverdo et al., 2023. The group is mainly defined by distinct scale- and/or spinula-like surface structures of the dorsal sclerite of the median lobe. The species group already contains four described species and 42 new species and one subspecies treated here: Austrelatusaiyurensissp. nov., A.asteiossp. nov., A.bewaniensissp. nov., A.bosaviensissp. nov., A.bundunensissp. nov., A.centralensissp. nov., A.craterensissp. nov., A.decorissp. nov., A.dekaisp. nov., A.epicharissp. nov., A.flavocapitatussp. nov., A.fuscussp. nov., A.herzogensissp. nov., A.inconstanssp. nov., A.iriatoisp. nov., A.kalibumisp. nov., A.kebarensissp. nov., A.kokodensissp. nov., A.leptossp. nov., A.lolokisp. nov., A.lopintolensissp. nov., A.madangensissp. nov., A.maindaisp. nov., A.mamberamosp. nov., A.mianminensissp. nov., A.miltokarenossp. nov., A.noiadisp. nov., A.normanbyensissp. nov., A.ohusp. nov., A.posmanisp. nov., A.procerussp. nov., A.pseudogestroisp. nov., A.pseudomianminensissp. nov., A.robustussp. nov., A.sarartisp. nov., A.sumokedisp. nov., A.wanangensissp. nov., A.wasiorensissp. nov., A.wasurensissp. nov., A.weigelisp. nov., A.yamurensissp. nov., A.yeretuarsp. nov., A.xanthocephalusnabirensisssp. nov. A checklist and identification key to New Guinean species of the group are provided and important diagnostic characters are illustrated. Data on the species distributions and habiat preferences are given.
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  • 文章类型: Journal Article
    探索城市剩余植被功能特征的变化为城市化背景下的植物组装提供了更全面的视角。虽然植物功能性状受环境梯度和植物物种进化史的影响,城市化介导功能性状组合和剩余植被进化史的具体机制尚不清楚。为了研究剩余植被的功能性状与系统发育与城市化之间的关系,我们在贵阳市9个残存森林斑块的72个样地中对木本植物种类进行了分类,中国,分为四组(城市,农村,中群和一般群)根据其在不同城市化水平下的位置,并测量了这些物种的9个功能性状。然后根据Blomberg的K对四个物种组的每个功能性状的系统发育信号进行定量。我们使用系统发育广义最小二乘法分析了功能性状与物种丰度之间的相关性。结果表明,与其他群体相比,在城市群体的功能性状中检测到显著的系统发育信号。去除系统发育后,在树木和灌木物种的功能性状与物种丰度之间检测到13个和3个显着关系。城市群体中高大树种更丰富,而一般群体偏爱具有适应性特征(低高度,高叶面积和C/N)的物种。总的来说,我们证明,在结合系统发育模式后,城市化驱动了残林植物功能性状的变化。
    Exploring the alterations in functional traits of urban remnant vegetation offers a more comprehensive perspective on plant assembly within the context of urbanization. While plant functional traits are influenced by both environmental gradients and the evolutionary history of plant species, the specific mechanisms by which urbanization mediates the combination of functional traits and the evolutionary history of remnant vegetation remain unclear. To examine the relationship between functional traits and phylogenies of remnant vegetation and urbanization, we classified the woody plant species surveyed in 72 sample plots in nine remnant forest patches in Guiyang, China, into four groups (urban, rural, middle and general groups) according to their location under different levels of urbanization and measured nine functional traits of these species. The phylogenetic signals of each functional trait of the four species groups were then quantified based on Blomberg\'s K. Furthermore, we analysed the correlations between functional traits and species abundance using phylogenetic generalized least squares. The results showed that significant phylogenetic signals were detected in more functional traits of the urban group than other groups. Thirteen and three significant relationships between functional traits and species abundance were detected for tree and shrub species after removing phylogenies. Tall tree species were more abundant in the urban group, while the general group favoured the species with adaptable traits (low height and high leaf area and C/N). Overall, we demonstrate that urbanization drove shifts in plant functional traits in remnant forests after combining the phylogenetic patterns.
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  • 文章类型: Journal Article
    在这里,Austrelatusgen.11月。(类型物种:CopelatusirregularisW.J.Macleay,1871)被描述为以前分配给CopelatusErichson的主要澳大利亚物种的独特谱系,1832.新属得到了很好的支持,使用贝叶斯和简约方法对DNA序列数据进行系统发育分析的单系进化枝。Austrelatus的主要形态诊断特征是aedus的复杂正中叶,有明显的背侧和腹侧巩膜,通常在顶端一半分成两个不同形状的裂片或以其他方式修饰。新属与其他Copelatinae属的形态学比较,尤其是Copelatus和ExocelinaBroun,1886年,并提供了新几内亚Copelatinae的通用密钥。为主要来自澳大利亚地区(全部来自Copelatus)的31种已经描述的物种建立了新的组合:Austrelatusadelbert(Megna,Atthakor,Manaono,Hendrich&Balke,2017),梳子。11月。;A.badeni(夏普,1882),梳子。11月。;A.贝克韦利(J.Balfour-Browne,1939),梳子。11月。;A.baranensis(哈耶克,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.bougainvillensis(哈耶克,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.boukali(Hendrich&Balke,1998),梳子。11月。;A.clarki(夏普,1882),梳子。11月。;A.daemeli(夏普,1882),梳子。11月。;A.davidi(Wewalka,2017),梳子。11月。;A.deccanensis(Sheth,Ghate&Hájek,2018),梳子。11月。;A.fidschiensis(齐默尔曼,1928),梳子。11月。;A.gestroi(Régimbart,1892),梳子。11月。;不规则动物(W.J.麦克利,1871),梳子。11月。;A.kaszabi(Guignot,1956),梳子。11月。;A.kietensis(Hájek,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.laevipennis(哈耶克,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.luteomaculatus(Guignot,1956),梳子。11月。;A.maushomi(Sheth,Ghate&Hájek,2018),梳子。11月。;A.neoguineensis(Zimmermann,1919),梳子。11月。;A.nigrolineatus(夏普,1882),梳子。11月。;A.papuensis(J.Balfour-Browne,1939),梳子。11月。;A.parallus(齐默尔曼,1920a),梳子。11月。;A.schuhi(Hendrich&Balke,1998),梳子。11月。;A.sibelaemontis(哈耶克,Hendrich,Hawlitschek&Balke,2010),梳子。11月。;A.strigosulus(Fairmaire,1878),梳子。11月。;A.ternatensis(Régimbart,1899),梳子。11月。;A.uludanuensis(Hendrich&Balke,1995),梳子。11月。;A.urceolus(哈耶克,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.variistriatus(Hájek,Shaverdo,Hendrich&Balke,2021),梳子。11月。;A.wallacei(J.Balfour-Browne,1939),梳子。11月。和A.xanthocephalus(Régimbart,1899),梳子。11月。来自巴布亚新几内亚的Austrelatus物种分为两个非正式物种组,A.neoguineensis组和A.papuensis组,和A.fumatosp.11月。A.setphallussp.11月。站在他们一边。根据形态特征和Cox1数据,引入了A.neoguineensis组,其中描述了三个先前已知的物种和29个新物种:Austrelatusbaliemsp。11月。,A.bormensissp.11月。,A.布拉萨斯。11月。,A.debulensisssp.11月。,A.fakfaksp.11月。,A.febrisaurisp.11月。,A.fajaenissp.11月。,A.garainensisssp.11月。,A.innominatussp.11月。,A.lembenenssp.11月。,A.lisaesp.11月。,A.manokwariensisssp.11月。,A.mimikasp.11月。,A.mirificussp.11月。,A.moreguinensissp.11月。,A.nadjaesp.11月。,A.oksibilenssp.11月。,A.pseudoneoguinensissp.11月。,A.pseudoksibilensissp.11月。,A.rajaampatenssp.11月。,A.rouaffersp.11月。,A.rugossp.11月。,A.sandaunensisssp.11月。,A.sarmiensissp.11月。,A.securiformissp.11月。,A.testegensissp.11月。,A.toricellisp.11月。,A.vagauensissp.11月。,还有A.wanggarenissp.11月。齐默尔曼,1919年,syn。11月。被认为是A.clarki(Sharp,1882).CopelatusgestroiRégimbart的样品,1892年,C.neoguineensisZimmermann,1919年和C.xanthocephalusRégimbart,1899年被指定。所有物种都被(重新)描述,以及它们的重要物种特征(生殖器,habitus,和颜色图案)进行了说明。提供所有物种的钥匙。简要概述了每个物种的已知分布和栖息地偏好。新几内亚Austrelatus占据了各种死水栖息地,要么是正宗的严格意义,或与黄土栖息地相关的积水(例如,回流,岩石池,间歇性/短暂流池)。
    Herein, Austrelatusgen. nov. (type species: Copelatusirregularis W.J. Macleay, 1871) is described for a distinctive lineage of predominantly Australasian species previously assigned to Copelatus Erichson, 1832. The new genus was retrieved as well supported, monophyletic clade in phylogenetic analysis of DNA sequences data using Bayesian and parsimony approaches. The main morphological diagnostic character of Austrelatus is a complex median lobe of the aedeagus, with evident dorsal and ventral sclerites usually divided in apical half into two lobes of different shape or otherwise modified. Morphological comparison of the new genus with other Copelatinae genera, especially with Copelatus and Exocelina Broun, 1886, and a generic key to the New Guinean Copelatinae are provided. New combinations are established for 31 already described species mainly from the Australian Region (all from Copelatus): Austrelatusadelbert (Megna, Atthakor, Manaono, Hendrich & Balke, 2017), comb. nov.; A.badeni (Sharp, 1882), comb. nov.; A.bakewelli (J. Balfour-Browne, 1939), comb. nov.; A.baranensis (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.bougainvillensis (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.boukali (Hendrich & Balke, 1998), comb. nov.; A.clarki (Sharp, 1882), comb. nov.; A.daemeli (Sharp, 1882), comb. nov.; A.davidi (Wewalka, 2017), comb. nov.; A.deccanensis (Sheth, Ghate & Hájek, 2018), comb. nov.; A.fidschiensis (Zimmermann, 1928), comb. nov.; A.gestroi (Régimbart, 1892), comb. nov.; A.irregularis (W.J. Macleay, 1871), comb. nov.; A.kaszabi (Guignot, 1956), comb. nov.; A.kietensis (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.laevipennis (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.luteomaculatus (Guignot, 1956), comb. nov.; A.maushomi (Sheth, Ghate & Hájek, 2018), comb. nov.; A.neoguineensis (Zimmermann, 1919), comb. nov.; A.nigrolineatus (Sharp, 1882), comb. nov.; A.papuensis (J. Balfour-Browne, 1939), comb. nov.; A.parallelus (Zimmermann, 1920a), comb. nov.; A.schuhi (Hendrich & Balke, 1998), comb. nov.; A.sibelaemontis (Hájek, Hendrich, Hawlitschek & Balke, 2010), comb. nov.; A.strigosulus (Fairmaire, 1878), comb. nov.; A.ternatensis (Régimbart, 1899), comb. nov.; A.uludanuensis (Hendrich & Balke, 1995), comb. nov.; A.urceolus (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.variistriatus (Hájek, Shaverdo, Hendrich & Balke, 2021), comb. nov.; A.wallacei (J. Balfour-Browne, 1939), comb. nov. and A.xanthocephalus (Régimbart, 1899), comb. nov.Austrelatus species from New Guinea are divided into two informal species groups, the A.neoguineensis group and A.papuensis group, and A.fumatosp. nov. and A.setiphallussp. nov. standing aside of them. The A.neoguineensis group is introduced with three previously known species and 29 new species described here based on the morphological characters and Cox1 data: Austrelatusbaliemsp. nov., A.bormensissp. nov., A.brazzasp. nov., A.debulensissp. nov., A.fakfaksp. nov., A.febrisaurisp. nov., A.fojaensissp. nov., A.garainensissp. nov., A.innominatussp. nov., A.lembenensissp. nov., A.lisaesp. nov., A.manokwariensissp. nov., A.mimikasp. nov., A.mirificussp. nov., A.moreguinensissp. nov., A.nadjaesp. nov., A.oksibilensissp. nov., A.pseudoneoguineensissp. nov., A.pseudoksibilensissp. nov., A.rajaampatensissp. nov., A.rouaffersp. nov., A.rugosussp. nov., A.sandaunensissp. nov., A.sarmiensissp. nov., A.securiformissp. nov., A.testegensissp. nov., A.toricellisp. nov., A.vagauensissp. nov., and A.wanggarensissp. nov.Copelatusvagestriatus Zimmermann, 1919, syn. nov. is recognised as a junior subjective synonym of A.clarki (Sharp, 1882). The lectotypes of Copelatusgestroi Régimbart, 1892, C.neoguineensis Zimmermann, 1919 and C.xanthocephalus Régimbart, 1899 are designated. All species are (re)described, and their important species characters (genitalia, habitus, and colour patterns) are illustrated. Keys to all species are provided. The known distribution and habitat preferences of each species are outlined briefly. New Guinean Austrelatus occupy a variety of stagnant water habitats, either lentic sensu stricto, or standing water associated with lotic habitats (e.g., backflows, rockpools, intermittent / ephemeral stream pools).
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  • 文章类型: Journal Article
    阿莫洛普斯属的一个新物种,Amolopsailaosp.11月。,来自云南中部,中国。新物种属于A.mantzorum物种组。基于线粒体16SrRNA组合的系统发育分析,COI,和cytb基因揭示了新物种是具有强大支持的Amolopsottorum的姊妹分类单元。基因上,新物种在cytb序列上与A.ottorum差异为5.0%。形态学上,新物种可以通过以下特征的组合与已知的同源物区分开来:真正的背外侧褶皱缺失,但是由一系列腺体形成的背外侧褶皱;第一指尖的边缘凹槽缺失;体型小(男性SVL33.0-35.1毫米,女性SVL41.3毫米);HW/SVL0.32-0.35;UEW/SVL0.08-0.10;THL/SVL0.52-0.56;vomerine牙齿缺失;眶间距离窄于胸间距离;鼓膜明显,眼睛直径小于一半;存在鼓上褶皱,模糊;泄殖腔两侧的一对大结节;胫骨关节超过眼睛的前角;和声囊缺失。从上新世4.23Mya到更新世1.2Mya,曼陀罗菌组中的枝条发生事件迅速发生,与上新世以来青藏高原最近的强烈隆升相吻合。将这项研究的发现与最新的分类学进展相结合,我们认为云南有20种已知的阿莫洛人,中国,占云南两栖动物多样性比例最高,其中五个属于A.mantzorum组。在云南不同的亚动物和水系统中,云南西北部和怒江流域的阿莫洛普物种多样性最高。
    A new species of the genus Amolops, Amolops ailao sp. nov., is described from central Yunnan, China. The new species belongs to the A. mantzorum species group. Phylogenetic analyses based on the combination of mitochondrial 16S rRNA, COI, and cytb genes revealed that the new species is the sister taxon to Amolops ottorum with strong support. Genetically, the new species differs from A. ottorum by 5.0% in cytb sequences. Morphologically, the new species can be distinguished from known congeners by the combination of the following characters: true dorsolateral folds absent, but dorsolateral folds formed by series of glands present; circummarginal groove on tip of first finger absent; body size small (males SVL 33.0-35.1 mm and female SVL 41.3 mm); HW/SVL 0.32‒0.35; UEW/SVL 0.08‒0.10; THL/SVL 0.52‒0.56; vomerine teeth absent; interorbital distance narrower than internarial distance; tympanum distinct, less than half eye diameter; supratympanic fold present, indistinct; a pair of large tubercles on sides of cloaca; tibiotarsal articulation reaching beyond anterior corner of eye; and vocal sac absent. The cladogenesis events within the A. mantzorum group rapidly occurred from Pliocene 4.23 Mya to Pleistocene 1.2 Mya, coinciding with the recent intensive uplift of the Qinghai-Tibetan Plateau since the Pliocene. Combining findings in this study with the most recent taxonomic progress, we consider that there are 20 known Amolops species in Yunnan, China, accounting for the highest proportion of amphibian diversity of Yunnan, and five of them belong to the A. mantzorum group. Among different subfauna and water systems in Yunnan, the species diversity of Amolops in northwestern Yunnan and Nu River Basin is highest.
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  • 文章类型: Journal Article
    对鸭嘴兽物种群进行了审查,并有三个物种,包括一个新物种,P.homasawinisp.11月。,被认可。该物种组以红棕色的身体与P.paraltela物种组不同,propatealspiracle的椭圆形状,细长的触角景观,额骨之间明显变窄的后间隙。Platythyreahomasawinisp.11月。,来自泰国和中国,是根据工人种姓来描述的。在分解的后期,从枯木中收集了新物种的类型系列。提供了基于工人种姓的桔梗属东方物种的关键。
    The Platythyreaclypeata species group is reviewed and three species, including one new species, P.homasawini sp. nov., are recognized. This species group is distinguished from the P.parallela species group by the reddish-brown body, the elliptical shape of the propodeal spiracle, the elongate antennal scape, and the distinctly narrowed posteriad space between frontal carinae. Platythyreahomasawini sp. nov., from Thailand and China, is described based on the worker caste. The type series of the new species was collected on the forest floor from dead wood in an advanced stage of decomposition. A key to the Oriental species of the genus Platythyrea based on the worker caste is provided.
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  • 文章类型: Journal Article
    LispeLatreille(Diptera:Muscidae)是一类广泛存在于半水生环境中的掠食性苍蝇。以前对该属的研究主要集中在形态分类上,所以完全缺乏分子数据,并且没有尝试对属的系统发育定位或基因内关系的解决。为了解决Lispe的系统发育位置并填补其在生命之树Web项目中的空白,58Lispespp。(涵盖13个公认的Lispe物种组中的11个)被选择使用最大似然(ML)估计来重建系统发育,最大简约(MP)分析,和基于两个线粒体蛋白质编码基因(细胞色素c氧化酶亚基I(COXI)和细胞色素b基因(CYTB))和一个核基因(CAD基因的氨基甲酰磷酸合成酶区域的片段)的贝叶斯推断(BI)。系统发育分析表明,单系Lispe是单系Limnophora的姐妹组,一起组成了科诺西纳科下的Limnophorini部落。三个通用类别被证明是过时的:ChaetolispaMalloch,LispacoenosiaSnyder,和XenolispaMalloch.在属内,分子和形态数据阐明了11个物种组的有效性。这项研究为继续研究这个迷人而广泛的属提供了坚实的基础。
    Lispe Latreille (Diptera: Muscidae) are a widespread group of predatory flies that inhabit semi-aquatic environments. Previous studies on this genus have mainly focused on morphological classification, so molecular data are entirely lacking, and there has been no attempt at a phylogenetic placement of the genus or the resolution of intragenic relationships. To address the phylogenetic placement of Lispe and to fill its gap in the Tree of Life Web Project, 58 Lispe spp. (covering 11 out of 13 acknowledged Lispe species groups) were selected to reconstruct a phylogeny using Maximum likelihood (ML) estimates, Maximum Parsimony (MP) analyses, and Bayesian inference (BI) based on two mitochondrial protein-coding genes (cytochrome c oxidase subunit I (COXI) and cytochrome b gene (CYTB)) and one nuclear gene (a fragment of the carbamoyl phosphate synthetase region of the CAD gene). The phylogenetic analyses indicated that the monophyletic Lispe is the sister group of the monophyletic Limnophora, together forming the tribe Limnophorini under the subfamily Coenosiinae. Three generic categories are proven obsolete: Chaetolispa Malloch, Lispacoenosia Snyder, and Xenolispa Malloch. Within the genus, the validity of 11 species groups is clarified by both molecular and morphological data. This study provides a sound basis for continuing intergeneric and intrageneric research into this fascinating and widespread genus.
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  • 文章类型: Journal Article
    链球菌属,链球菌科的一员,以其广泛的工业而闻名,临床和人类的相关性。链球菌属中的两个成员,即朝鲜链球菌和红斑链球菌,从龈下牙菌斑和人小肠液中分离,分别。这些成员的类型菌株的16SrRNA基因序列相似性显示99.87%的相似性。在这项研究中,我们进行了系统的研究,以阐明这两个物种的分类分配。基于全基因组序列信息的基因组相似性评估,例如使用orthoANI和fastANI的平均核苷酸同一性,Koreiensis和S.ilei之间的数字DNA-DNA杂交值分别为96.31、96.60、86.4和97.63。所有这些基因组相似性值显然超过了物种划分的截止值。使用16SrRNA基因和使用PhyloPhlAn的全基因组信息进行系统发育评估,它使用细菌门的大约400个保守基因,为这些成员在系统发育树中形成单系进化枝提供了更多证据。Pan基因组分析表明,核心基因组非常大(n=1374),并且在S.korensis和S.lei的基因组之间不存在独特的基因。此外,我们发现了这两个物种的类型菌株的高度同步基因组。基于这些证据,我们建议将S.lei重新分类为后来的S.koreensis的异型同义词。
    The genus Streptococcus, a member of family Streptococcaceae, is known for its wide range of industrial, clinical and human relevance. Among the species of genus Streptococcus two members, namely Streptococcus koreensis and Streptococcus ilei, were isolated from subgingival dental plaque and human small intestinal fluid, respectively. The 16S rRNA gene sequence similarity of the type strains of these members shows a similarity of 99.87%. In this study, we performed a systematic study to clarify the taxonomic assignment of these two species. Genome similarity assessment based on whole-genome sequence information such as average nucleotide identity using orthoANI and fastANI, digital DNA-DNA hybridization value between S. koreensis and S. ilei were 96.31, 96.60, 86.4 and 97.63, respectively. All these genome similarity values clearly exceeded the species delineation cutoffs. Phylogenetic assessment using 16S rRNA gene and whole-genome information using PhyloPhlAn, which uses around 400 conserved genes across bacterial phyla, provides additional evidence for these members forming a monophyletic clade in the phylogenetic tree. Pan genome analysis suggests a very large core genome (n = 1374) and the presence of no unique gene between the genomes of S. koreensis and S. ilei. Additionally, we found highly syntenic genomes of type strains of these two species. Based on these evidences, we propose S. ilei should be reclassified as a later heterotypic synonym of S. koreensis.
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  • 文章类型: Journal Article
    在链球菌属中,从大鼠和熊的口腔中分离出两种成员,即拉蒂链球菌和熊链球菌,分别。这些成员的类型菌株显示出98.9%的16SrRNA基因序列相似性。基于系统的基因组分类单元基因组学研究,我们可以推断这些物种成员的分类分配。使用平均核苷酸同一性(orthoANI和fastANI)评估这些成员的类型菌株之间的基因组相似性,数字DNA-DNA杂交和平均氨基酸同一性(AAI)分别为98.5,98.3,88和98.3%.所有这些值都超过了物种划定的截止值,这表明了一个统一的物种。使用16SrRNA基因序列获得的系统发育树也表明了成员菌株的单系性质。菌株的这种单系分类学定位进一步补充了基于全基因组的系统基因组树。基于这些证据,我们建议应将S.ursoris重新分类为S.ratti的异型同义词。
    Among the species of genus Streptococcus two members namely Streptococcus ratti and Streptococcus ursoris were isolated from oral cavity of rat and bear, respectively. Type strain of these members shows a 16S rRNA gene sequence similarity of 98.9%. Based on systematic phylo-taxonogenomics investigations, we could deduce the taxonomic assignment of the members of these species. Genome similarity assessment among the type strain of these members using average nucleotide identity (orthoANI and fastANI), digital DNA-DNA hybridization and average amino acid identity (AAI) were 98.5, 98.3, 88, and 98.3% respectively. All these values exceed the species delineation cutoffs suggesting a unified species. Phylogenetic tree obtained using 16S rRNA gene sequence also indicates the monophyletic nature of the member strains. Such monophyletic taxonomic positioning of the strains was further complemented with the whole genome-based phylogenomic tree. Based on these evidences, we propose S. ursoris should be reclassified as a later heterotypic synonym of S. ratti.
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  • 文章类型: Journal Article
    生态毒理学生物测定中使用的种群的起源(来自自然(野生种群)或来自培养物(实验室种群))可能对测试物种对不同毒物的敏感性产生关键影响。然而,关于这个问题的可用信息很少。评估人口起源的可能影响(野生与实验室)对种属的毒物耐受性,我们对ECOTOX数据库进行了定量审查,我们从中收集了各种化合物(金属和有机物)的有效浓度,端点,和曝光时间。我们发现野生种群对毒物的敏感性普遍低于实验室种群,尽管敏感性取决于物种和毒物组。这表明实验室人群的生物测定结果可能高估了大多数化合物的毒性。我们的研究强调了种群起源在确定物种对毒物的敏感性方面的相关性。这项研究还警告了生态毒理学中使用的物种和毒物的偏见,这可能导致水生生态系统的生物多样性和毒理学背景的代表性不足。
    The origin of the populations used in ecotoxicological bioassays (from nature (wild populations) or from cultures (laboratory populations)) could have a key influence on the sensitivity of the tested species to different toxicants. However, the available information on this subject is scarce. To assess the likely influence of the population origin (wild vs. laboratory) of species-genus on the toxicant tolerance, we performed a quantitative review of the ECOTOX database, from which we collected the effective concentrations for a wide range of compounds (metals and organics), endpoints, and exposure times. We found a general trend of lower sensitivity of wild populations to toxicants than laboratory populations, although sensitivity was dependent on species and toxicant groups. This suggests that the results of bioassays with laboratory populations may overestimate the toxicity of most of the compounds. Our study highlights the relevance of the origin of the populations in the determination of the sensitivity of species to toxicants. This study also warns about the biases in the species and toxicants used in ecotoxicology, which may lead to an underrepresentation of the biodiversity and the toxicological context of aquatic ecosystems.
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  • 文章类型: Journal Article
    The ability of ant colonies to transport, store, and distribute food resources through trophallaxis is a key advantage of social life. Nonetheless, how the structure of the digestive system has adapted across the ant phylogeny to facilitate these abilities is still not well understood. The crop and proventriculus, structures in the ant foregut (stomodeum), have received most attention for their roles in trophallaxis. However, potential roles of the esophagus have not been as well studied. Here, we report for the first time the presence of an auxiliary thoracic crop in Pheidole aberrans and Pheidole deima using X-ray micro-computed tomography and 3D segmentation. Additionally, we describe morphological modifications involving the endo- and exoskeleton that are associated with the presence of the thoracic crop. Our results indicate that the presence of a thoracic crop in major workers suggests their potential role as repletes or live food reservoirs, expanding the possibilities of tasks assumed by these individuals in the colony. Our contribution emphasizes the utility of combining data from external and internal morphology to better understand functional and behavioral mechanisms.
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