small world network

小世界网络
  • 文章类型: Journal Article
    Apolipoprotein E ɛ4 allele (ApoE4) is the most common gene polymorphism related to Alzheimer\'s disease (AD). Impaired synaptic dysfunction occurs in ApoE4 carriers before any clinical symptoms. It remains unknown whether ApoE4 status affects the hippocampal neuromodulation, which further influences brain network topology.
    To study the relationship of regional and global network properties by using graph theory analysis and glutamatergic (Glx) neuromodulation in the ApoE isoforms.
    Prospective.
    Eighty-four cognitively normal adults (26 ApoE4 and 58 non-ApoE4 carriers).
    Gradient-echo echo-planar and point resolved spectroscopy sequence at 3 T.
    Glx concentration in bilateral hippocampi were processed with jMRUI (4.0), and graph theory metrics (global: γ, λ, small-worldness in whole brain; regional: nodal clustering coefficient (Ci ) and nodal characteristic path length (Li )) in top 20% highly connected hubs of subgroups (low-risk: non-ApoE4; high-risk: APOE4) were calculated and compared.
    Two-sample t test was used to compare metrics between subgroups. Correlations between regional properties and Glx by Pearson\'s partial correlation with false discovery rate correction.
    Significant differences (P < 0.05) in Ci between subgroups were found in hubs of left inferior frontal, bilateral inferior temporal, and bilateral precentral gyri, right parahippocampus, and bilateral precuneus. In addition, there was a significant correlation between Glx in the left hippocampus and Ci in inferior frontal gyrus (r = -0.537, P = 0.024), right inferior temporal (r = -0.478, P = 0.043), right parahippocampus (r = -0.629, P = 0.016), left precentral (r = -0.581, P = 0.022), right precentral (r = -0.651, P = 0.003), left precuneus (r = -0.545, P = 0.024), and right precuneus (r = -0.567, P = 0.022); and Li in left precuneus (r = 0.575, P = 0.032) and right precuneus (r = 0.586, P = 0.032) in the high-risk group, but not in the low-risk group.
    Our results suggested that healthy ApoE4 carriers exhibit poorer local interconnectivity. Moreover, the close relationship between glutamate and small-world network properties in ApoE4 carriers might reflect a compensatory response to the impaired network efficiency.
    2 TECHNICAL EFFICACY: Stage 3.
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  • 文章类型: Journal Article
    这项静息状态功能磁共振成像(fMRI)研究使用图论分析(GTA)确定了健康成年人强烈渴望虚空所引起的脑功能网络的功能连通性(FC)变化和拓扑特性变化。
    三十四健康,惯用右手的受试者通过喝水来填充他们的膀胱。受试者在空膀胱和强烈的排空状态下进行扫描。在自动解剖标记(AAL)图谱中的90个大脑区域中计算Pearson的相关系数,以构建大脑功能网络。配对t检验(P<0.05,错误发现率[FDR]校正后)用于检测FC的显着差异,拓扑属性(小世界参数[伽马,sigma],Cp,Lp,Eglob,Eloc,和Ennodal)在所有科目的两种状态之间。
    这两种状态都显示出小世界网络属性。全脑网络的聚类系数(Cp)和局部效率(Eloc)下降,而默认模式网络(DMN)内的FC与膀胱排空状态相比在强烈的排空愿望期间增加。此外,在基底神经节(BG)中检测到结节效率(结节)增加,DMN,感觉运动相关网络(SMN),和视觉网络(VN)。
    我们检测到大脑功能网络中的FC变化和拓扑性质的变化,这是由健康人群强烈的虚空欲望引起的,并表明排尿控制可能是一个由DMN主导并由多个子网络协调的过程(例如,BG,SMN,和VN),这可以作为了解膀胱功能障碍的病理过程的基线,并有助于改善未来的靶向治疗。
    This resting-state functional magnetic resonance imaging (fMRI) study determined the functional connectivity (FC) changes and topologic property alterations of the brain functional network provoked by a strong desire to void in healthy adults using a graph theory analysis (GTA).
    Thirty-four healthy, right-handed subjects filled their bladders by drinking water. The subjects were scanned under an empty bladder and a strong desire to void states. The Pearson\'s correlation coefficients were calculated among 90 brain regions in the automated anatomical labeling (AAL) atlas to construct the brain functional network. A paired t test (P < .05, after false discovery rate [FDR] correction) was used to detect significant differences in the FC, topologic properties (small-world parameters [gamma, sigma], Cp, Lp, Eglob, Eloc, and Enodal) between the two states in all subjects.
    Both the two states showed small-world network properties. The clustering coefficient (Cp) and local efficiency (Eloc) in the whole brain network decreased, while the FC within the default mode network (DMN) increased during the strong desire to void compared with the empty bladder state. Moreover, an increased nodal efficiency (Enodal) was detected in the basal ganglia (BG), DMN, sensorimotor-related network (SMN), and visual network (VN).
    We detected FC changes and topologic property alterations in brain functional networks caused by a strong desire to void in healthy and suggest that the micturition control may be a process dominated by DMN and coordinated by multiple sub-networks (such as, BG, SMN, and VN), which could serve as a baseline for understanding the pathologic process underlying bladder dysfunction and be useful to improve targeted therapy in the future.
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  • 文章类型: Journal Article
    本研究提出了一种基于小世界网络(SWN)和多智能体系统(MAS)的集成模型,用于模拟流行病的时空传播。在这个模型中,MAS代表个体之间时空互动的过程,和SWN描述了代理之间的社会关系网络。该模型由代理属性定义组成,代理人移动规则,邻里,主体间社会关系网络的构建和状态转换规则。社会关系网络和代理状态转换规则的构建对于实现所提出的模型至关重要。感染“记忆”的衰变效应,将智能体之间的距离和社会关系引入模型中,这在传统模型中是不可用的。基于swarm软件平台,利用该模型对广州市流感的传播过程进行了模拟。该集成模子比传统的SEIR模子和纯的基于MAS的传染病模子具有更好的机能。该模型已应用于实际地理环境中流行病传播的模拟。模拟可以为理解提供有用的信息,预测和控制流行病的传播。
    This study proposes an integrated model based on small world network (SWN) and multi-agent system (MAS) for simulating epidemic spatiotemporal transmission. In this model, MAS represents the process of spatiotemporal interactions among individuals, and SWN describes the social relation network among agents. The model is composed of agent attribute definitions, agent movement rules, neighborhoods, construction of social relation network among agents and state transition rules. The construction of social relation network and agent state transition rules is essential for implementing the proposed model. The decay effects of infection \"memory\", distance and social relation between agents are introduced into the model, which are unavailable in traditional models. The proposed model is used to simulate the transmission process of flu in Guangzhou City based on the swarm software platform. The integration model has better performance than the traditional SEIR model and the pure MAS based epidemic model. This model has been applied to the simulation of the transmission of epidemics in real geographical environment. The simulation can provide useful information for the understanding, prediction and control of the transmission of epidemics.
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  • 文章类型: English Abstract
    The artificial neural network has the ability of the information processing and storage, good adaptability, strong learning function, association function and fault tolerance function. The research on the artificial neural network is mostly focused on the dynamic properties due to fact that the applications of artificial neural networks are related to its dynamic properties. At present, the researches on the neural network are based on the hierarchical network which can not simulate the real neural network. As a high level of abstraction of real complex systems, the small world network has the properties of biological neural networks. In the study, the small world network was constructed and the optimal parameter of the small word network was chosen based on the complex network theory firstly. And then based on the regulation mechanism of the synaptic plasticity and the topology of the small world network, the small world neural network was constructed and dynamic properties of the neural network were analyzed from the three aspects of the firing properties, dynamic properties of synaptic weights and complex network properties. The experimental results showed that with the increase of the time, the firing patterns of excitatory and inhibitory neurons in the small world neural network didn\'t change and the firing time of the neurons tended to synchronize; the synaptic weights between the neurons decreased sharply and eventually tended to be steady; the connections in the neural network were weakened and the efficiency of the information transmission was reduced, but the small world attribute was stable. The dynamic properties of the small world neural network vary with time, and the dynamic properties can also interact with each other: the firing synchronization of the neural network can affect the distribution of synaptic weights to the minimum, and then the dynamic changes of the synaptic weights can affect the complex network properties of the small world neural network.
    人工神经网络具有大规模的信息处理和存储能力、良好的自适应性以及很强的学习功能、联想功能和容错功能。动态特性的研究一直是人工神经网络理论研究的重点,主要原因在于人工神经网络的应用都与网络的动态特性有关。目前,神经网络的研究主要是基于层级网络,其拓扑不能模拟真实生物神经网络。小世界网络作为大量真实复杂系统的高度抽象,具有生物神经网络特性。本研究首先构建了小世界网络并基于复杂网路理论选择出适合于小世界网络的最佳参数,进而基于突触可塑性调节机制和小世界网络拓扑构建了小世界神经网络,并从放电特性、突触权重动态特性和复杂网络特性三个方面分析了小世界神经网络的动态特性。实验结果表明:随着时间的增加,小世界神经网络的兴奋性与抑制性神经元放电模式没有改变且神经元的放电时间趋于同步;小世界神经网络中各神经元间的突触权重急剧减小最终趋于稳定;网络的连接减弱且信息传递效率降低,但小世界属性较为稳定。小世界神经网络的动态特性随时间而变化且相互影响:网络的放电同步特性可影响突触权重趋于最小值分布,进而突触权重的动态变化也可影响复杂网络特性。.
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  • 文章类型: Journal Article
    通过强调减少图像采集的时间范围来确保患者的舒适度和依从性,不影响图像质量是功能性MRI检查的关键方面。多频带静息状态fMRI(MB-rsfMRI)是一种相当新的技术,可以通过提供更多的时间点来缩短MR图像采集时间。该研究旨在比较使用常规静息状态fMRI(rsfMRI)和MB-rsfMRI技术的信号特征以及功能连通性。
    9名健康志愿者在3TGE扫描仪(DiscoveryMR750w™)中前瞻性地接受了常规的静息状态fMRI和多波段rsfMRI扫描技术。我们比较了常规rs-fMRI和MB-rsfMRI的时间SNR(tSNR)。我们从图论测度的角度研究了语言网络连通性和小世界网络特征,以比较两种技术。
    我们计算了常规静息态功能磁共振成像(rsfMRI)和MB-rsfMRI技术的tSNR。MB-rsfMRI的图形理论测量与常规rsfMRI之间存在强正相关(Pearson相关性,r=0.99)。两种技术在健康对照中显示出相似的小世界网络特征。
    本研究证明了常规rsfMRI和MB-rsfMRI采集在计算图论测量上的差异可以忽略不计。因此,当前分析证明,MB-rs-fMRI可以用作时间减少采集技术,其使得能够在健康受试者中映射具有与常规rs-fMRI类似的结果的功能连通性。
    Ensuring patient comfort and compliance by emphasizing reduced time frame for image acquisition, without compromising image quality is the key aspect with functional MRI examination. Multiband resting state fMRI (MB-rsfMRI) is a fairly new technique that potentially shortens MR image acquisition time by providing increased number of time points. The study aims to compare signal characteristics as well as the functional connectivity using conventional resting-state fMRI (rsfMRI) with that of MB-rsfMRI technique.
    9 healthy volunteers have prospectively undergone conventional resting-state fMRI and Multiband rsfMRI scanning technique in a 3T GE scanner (Discovery MR750w™). We compared the temporal SNR (tSNR) of conventional rs-fMRI with that of MB-rsfMRI. We looked at the language network connectivity and small world network characteristics from graph theoretical measures to compare the two techniques.
    We computed the tSNR of conventional resting-state fMRI (rsfMRI) and MB-rsfMRI technique. A strong positive correlation was seen between graph theoretical measures from MB-rsfMRI and conventional rsfMRI (Pearson Correlation, r = 0.99). Both techniques showed similar small world network characteristics in healthy controls.
    The present study demonstrates negligible differences between the conventional-rsfMRI and MB-rsfMRI acquisitions on the computed graph theoretic measures. Accordingly current analysis proves that MB-rs-fMRI may be used as a time reducing acquisition technique that enables mapping of functional connectivity with similar outcome as conventional rs-fMRI in healthy subjects.
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  • 文章类型: Journal Article
    突触缺乏是神经退行性疾病的一个已知标志,但是在细胞水平上诊断受损的突触并非易事。尽管如此,可以使用不需要高空间分辨率的技术来检测具有受损突触的神经元网络的系统级动力学变化。本文研究了当神经元网络遭受突触损失时,神经元网络的结构/拓扑如何影响其动力学。我们通过指定度分布来研究不同的神经元网络结构/拓扑。度分布的模式可以用来构建由丰富的俱乐部组成的网络,类似于小世界网络,也是。我们定义了两个动态度量来比较具有不同结构的网络的活动:持久性活动(即,消除初始刺激后网络的自我维持活动)和活动质量(即,参与网络持续活动的神经元百分比)。我们的结果表明,突触损失对具有双峰度分布的网络的持续活动的影响小于对随机网络的影响。当程度分布的模式之间的距离增加时,神经元网络的鲁棒性增强。这表明,具有不同模式的网络的丰富俱乐部保持整个网络的活跃。此外,在活动质量和持续活动之间进行权衡。对于一系列分布,与随机网络相比,对于具有双峰度分布的网络,这两个动态指标都相当高。我们还提出了三种不同的突触损伤情况,可能对应于不同的病理或生物学状况。无论网络结构/拓扑如何,结果表明,当损伤与神经元的活动相关时,突触丢失对网络的活动有更严重的影响。
    Synaptic deficiencies are a known hallmark of neurodegenerative diseases, but the diagnosis of impaired synapses on the cellular level is not an easy task. Nonetheless, changes in the system-level dynamics of neuronal networks with damaged synapses can be detected using techniques that do not require high spatial resolution. This paper investigates how the structure/topology of neuronal networks influences their dynamics when they suffer from synaptic loss. We study different neuronal network structures/topologies by specifying their degree distributions. The modes of the degree distribution can be used to construct networks that consist of rich clubs and resemble small world networks, as well. We define two dynamical metrics to compare the activity of networks with different structures: persistent activity (namely, the self-sustained activity of the network upon removal of the initial stimulus) and quality of activity (namely, percentage of neurons that participate in the persistent activity of the network). Our results show that synaptic loss affects the persistent activity of networks with bimodal degree distributions less than it affects random networks. The robustness of neuronal networks enhances when the distance between the modes of the degree distribution increases, suggesting that the rich clubs of networks with distinct modes keep the whole network active. In addition, a tradeoff is observed between the quality of activity and the persistent activity. For a range of distributions, both of these dynamical metrics are considerably high for networks with bimodal degree distribution compared to random networks. We also propose three different scenarios of synaptic impairment, which may correspond to different pathological or biological conditions. Regardless of the network structure/topology, results demonstrate that synaptic loss has more severe effects on the activity of the network when impairments are correlated with the activity of the neurons.
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  • 文章类型: Journal Article
    精神分裂症是一种以大脑功能网络中断为特征的疾病。在精神分裂症中,大脑网络的特点是分布式信息处理效率降低;然而,信息处理效率与精神分裂症症状之间的相关性尚不清楚。很少有研究研究精神分裂症的路径长度效率。在这项研究中,我们从49例精神分裂症患者和28例健康人的静息态功能磁共振成像数据中计算了小世界网络指标.我们使用脑区网络的图论分析来计算脑网络效率,根据自动解剖标记切片方案的定义,并使用精神病理学的5因素模型研究了效率相关性,它考虑了精神分裂症症状的各个领域,也可能考虑离散的致病过程。静息精神分裂症患者大脑的整体效率低于健康对照组,但两组的局部效率没有差异.精神病理学的严重性,阴性症状,抑郁和焦虑症状与精神分裂症患者大脑的整体效率相关。精神病理学的严重程度与短距离连接的网络效率提高相关,但不是远程连接的网络。我们的发现表明,精神分裂症的精神病理学与大脑网络信息处理效率相关。
    Schizophrenia is a condition marked by a disrupted brain functional network. In schizophrenia, the brain network is characterized by reduced distributed information processing efficiency; however, the correlation between information processing efficiency and the symptomatology of schizophrenia remains unclear. Few studies have examined path length efficiencies in schizophrenia. In this study, we examined small-world network metrics computed from resting state functional magnetic resonance imaging data collected from 49 patients with schizophrenia and 28 healthy people. We calculated brain network efficiency using graph theoretical analysis of the networks of brain areas, as defined by the Automated Anatomical Labeling parcellation scheme, and investigated efficiency correlations by using the 5-factor model of psychopathology, which considers the various domains of schizophrenic symptoms and might also consider discrete pathogenetic processes. The global efficiency of the resting schizophrenic brains was lower than that of the healthy controls, but local efficiency did not differ between the groups. The severity of psychopathology, negative symptoms, and depression and anxiety symptoms were correlated with global efficiency in schizophrenic brains. The severity of psychopathology was correlated with increased network efficiency from short-range connections, but not networks from long-range connections. Our findings indicate that schizophrenic psychopathology is correlated with brain network information processing efficiency.
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  • 文章类型: Journal Article
    Recently, there has been considerable interest in understanding brain networks in major depressive disorder (MDD). Neural pathways can be tracked in the living brain using diffusion-weighted imaging (DWI); graph theory can then be used to study properties of the resulting fiber networks. To date, global abnormalities have not been reported in tractography-based graph metrics in MDD, so we used a machine learning approach based on \"support vector machines\" to differentiate depressed from healthy individuals based on multiple brain network properties. We also assessed how important specific graph metrics were for this differentiation. Finally, we conducted a local graph analysis to identify abnormal connectivity at specific nodes of the network. We were able to classify depression using whole-brain graph metrics. Small-worldness was the most useful graph metric for classification. The right pars orbitalis, right inferior parietal cortex, and left rostral anterior cingulate all showed abnormal network connectivity in MDD. This is the first use of structural global graph metrics to classify depressed individuals. These findings highlight the importance of future research to understand network properties in depression across imaging modalities, improve classification results, and relate network alterations to psychiatric symptoms, medication, and comorbidities.
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  • 文章类型: Journal Article
    小世界网络概念为研究蛋白质分子的复杂三维结构提供了许多新的机会。这篇小型评论探讨了使用小世界网络方法研究蛋白质结构的已发表文献,强调已经测试过的描述符的不同组合,关于蛋白质-配体复合物中涉及配体结合的研究,和蛋白质-蛋白质复合物。小世界网络方法的好处和成功,将焦点从特定的交互转移到本地环境,即使是非本地现象,被描述。目的是展示小世界网络概念用于构建研究蛋白质结构和功能的新计算模型的不同方式,以及扩展和改进现有的建模方法。
    Small world network concepts provide many new opportunities to investigate the complex three dimensional structures of protein molecules. This mini-review explores the published literature on using small-world network approaches to study protein structure, with emphasis on the different combinations of descriptors that have been tested, on studies involving ligand binding in protein-ligand complexes, and on protein-protein complexes. The benefits and success of small world network approaches, which change the focus from specific interactions to the local environment, even to non-local phenomenon, are described. The purpose is to show the different ways that small world network concepts have been used for building new computational models for studying protein structure and function, and for extending and improving existing modelling approaches.
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  • 文章类型: Journal Article
    背景:注意缺陷/多动障碍(ADHD)是最常见的儿童精神疾病。中断的持续注意力是这种疾病中最重要的行为障碍之一。我们映射了在视觉持续任务期间负责持续注意力的神经网络的系统级拓扑属性,前提是网络特征异常与ADHD临床测量之间会出现强烈关联。
    方法:将图论技术(GTT)和基于双变量网络的统计(NBS)应用于22名患有ADHD复合型和22名年龄匹配的神经典型儿童的fMRI数据,评估功能性脑网络中的拓扑和节点配对特征。然后对网络特性和临床测量之间的关系进行相关测试。
    结果:在ADHD中,视觉注意网络显示额叶和枕叶区域的局部效率和淋巴结效率显著降低。程度和中心性的测量表明,前扣带皮质功能过度,额叶额叶功能低下,枕中,上颞叶,中中部,和多动症的上边缘回旋。NBS表明,内部网络中的成对连接显着减少,包括右顶叶和颞叶和左枕叶,在ADHD组。
    结论:这些数据表明,视觉注意力网络的非典型拓扑特征有助于经典的ADHD症状学,并且可能是该综合征特征的注意力不集中和多动/冲动的基础。
    BACKGROUND: Attention-deficit/hyperactivity disorder (ADHD) is the most commonly diagnosed childhood psychiatric disorder. Disrupted sustained attention is one of the most significant behavioral impairments in this disorder. We mapped systems-level topological properties of the neural network responsible for sustained attention during a visual sustained task, on the premise that strong associations between anomalies in network features and clinical measures of ADHD would emerge.
    METHODS: Graph theoretic techniques (GTT) and bivariate network-based statistics (NBS) were applied to fMRI data from 22 children with ADHD combined-type and 22 age-matched neurotypicals, to evaluate the topological and nodal-pairing features in the functional brain networks. Correlation testing for relationships between network properties and clinical measures were then performed.
    RESULTS: The visual attention network showed significantly reduced local-efficiency and nodal-efficiency in frontal and occipital regions in ADHD. Measures of degree and between-centrality pointed to hyper-functioning in anterior cingulate cortex and hypo-functioning in orbito-frontal, middle-occipital, superior-temporal, supra-central, and supra-marginal gyri in ADHD. NBS demonstrated significantly reduced pair-wise connectivity in an inner-network, encompassing right parietal and temporal lobes and left occipital lobe, in the ADHD group.
    CONCLUSIONS: These data suggest that atypical topological features of the visual attention network contribute to classic ADHD symptomatology, and may underlie the inattentiveness and hyperactivity/impulsivity that are characteristics of this syndrome.
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