rotten wood

  • 文章类型: Journal Article
    古老的森林拥有丰富的无脊椎动物组合。其中,腐生昆虫在营养循环和生态系统功能中起着重要作用。在这些环境中,昆虫和植物之间的协同进化在数百万年中达到了稳定的平衡。这些脆弱的生态系统主要受到栖息地丧失和碎片化的威胁,到目前为止,他们必须面对新的“塑料威胁”。“塑料广泛存在于所有的生物群落和生态系统中,由于其降解率低,多年来一直在积累。一旦积累,大块的塑料可以降解成更小的颗粒,后者对生物多样性和生态系统健康构成了巨大威胁,对生物群产生有害影响。由于塑料对陆地系统的影响仍未被探索,这项研究旨在增加对塑料和陆地生物群相互作用的认识。我们把我们的重点放在新的和广泛的主题塑料降解的腐熟甲虫幼虫,描述了他们如何将大型塑料分解成微塑料。为了研究seproxylic鲸蜡幼虫是否可以降解膨胀聚苯乙烯,我们做了一个实验。因此,我们把收集在野外的幼虫放在一个膨胀的聚苯乙烯盒子里。我们观察到幼虫在盒子的厚度中将大型塑料碎裂成微塑料,总共产生3441个颗粒。然后,我们从EPS盒中取出幼虫,并将它们隔离在装有天然基质的玻璃罐中。检查基材中是否有先前摄入的EPS微塑料,现在已被幼虫抛弃。此外,我们指出,塑料仍然附着在鲸蜡幼虫刚毛上,平均数量为30.7±12.5项。虽然是初步的,我们的研究结果强调,附着在蛇形细胞幼虫上的微塑料可能会被运输到栖息地并沿着食物网转移。总之,塑料污染可能会影响脆弱的物种和生态系统服务,这也对人类健康构成风险。
    Old-growth forests host a rich diversity of invertebrate assemblages. Among them, saproxylic insects play a fundamental role in the nutrient cycle and ecosystem functioning. In these environments, coevolution between insect and plants have reached a stable equilibrium over millions of years. These delicate ecosystems are threatened mainly by habitat loss and fragmentation, and to date, they have to face the new \"plastic threat.\" Plastics are widespread in all biomes and ecosystems accumulating throughout the years due to their low degradation rate. Once accumulated, large pieces of plastics can be degraded into smaller particles, the latter representing a great threat to biodiversity and ecosystem health, producing detrimental effects on biota. Since the effects of plastics on terrestrial systems remain largely unexplored, this study aimed at contributing to increasing the knowledge on the interaction between plastics and terrestrial biota. We put our emphasis on the novel and broad topic of plastic degradation by saproxylic beetle larvae, describing how they fragmented macroplastics into microplastics. To investigate whether saproxylic cetonid larvae could degrade expanded polystyrene, we performed an experiment. Thus, we put larvae collected in the field in an expanded polystyrene box. We observed that larvae dug in the thickness of the box fragmenting macroplastics into microplastics and producing a total of 3441 particles. Then, we removed the larvae from the EPS box and isolated them in glass jars filled with natural substrate. The substrate was checked for EPS microplastics previously ingested and now egested by larvae. Additionally, we pointed out that plastics remained attached to cetonid larvae setae, with a mean number of 30.7 ± 12.5 items. Although preliminary, our results highlighted that microplastics attached to saproxylic cetonid larvae might be transported into habitats and transferred along the food web. In conclusion, plastic pollution might affect vulnerable species and ecosystem services representing a risk also for human health.
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  • 文章类型: Journal Article
    腐烂的木材居住着大量的细菌,真菌,和昆虫有着复杂的环境关系。这项工作的目的是研究西班牙西北部森林腐烂的木材中微生物群(细菌和真菌)的组成,作为工业相关微生物的来源。被分析的森林位于一个定义明确的生物地理区域,结合了地中海和温带的大型生物气候学。细菌多样性,通过宏基因组分析确定,高于真菌异质性。然而,总共194种不同的可培养细菌分离株(主要是芽孢杆菌科,链霉菌科,Paenibacillaceae,和微杆菌科)获得,与343种真菌菌株(主要是曲霉科,海底科,和仙人掌科)。传统上被称为次级代谢产物生产者的分离物,如放线菌和青霉属的成员,通过检测抗生素生物合成簇和针对与木材腐烂有关的真菌的竞争性生物测定来筛选其抗微生物活性。此外,还检查了青霉菌分离株降解纤维素和从木材中释放阿魏酸的能力。这些结果表明,腐烂的木材是生态丰富的生态位,是生物技术有趣的微生物的有希望的来源。
    Rotting wood is inhabited by a large diversity of bacteria, fungi, and insects with complex environmental relationships. The aim of this work was to study the composition of the microbiota (bacteria and fungi) in decaying wood from a northwest Spanish forest as a source of industrially relevant microorganisms. The analyzed forest is situated in a well-defined biogeographic area combining Mediterranean and temperate macrobioclimates. Bacterial diversity, determined by metagenome analyses, was higher than fungal heterogeneity. However, a total of 194 different cultivable bacterial isolates (mainly Bacillaceae, Streptomycetaceae, Paenibacillaceae, and Microbacteriaceae) were obtained, in contrast to 343 fungal strains (mainly Aspergillaceae, Hypocreaceae, and Coniochaetaceae). Isolates traditionally known as secondary metabolite producers, such as Actinobacteria and members of the Penicillium genus, were screened for their antimicrobial activity by the detection of antibiotic biosynthetic clusters and competitive bioassays against fungi involved in wood decay. In addition, the ability of Penicillium isolates to degrade cellulose and release ferulic acid from wood was also examined. These results present decaying wood as an ecologically rich niche and a promising source of biotechnologically interesting microorganisms.
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  • 文章类型: Journal Article
    Five yeast strains were isolated from the gut of the groundbeetle Pterostichus gebleri and rotting wood, which were collected from two different localities in China. These strains were identified as representing two novel species of the genus Blastobotrys through comparison of sequences in the D1/D2 domains of the LSU rRNA gene and other taxonomic characteristics. Blastobotrys baotianmanensis sp. nov. produces two to three spherical ascospores per ascus, and is most closely related to the type strains of B. elegans, B. capitulata, B. arbuscula, and an undescribed species represented by strain BG02-7-20-006A-3-1. Blastobotrys baotianmanensis sp. nov. differed from these strains by 3.6-8.4 % divergence (21-46 substitutions and 0-4 gaps) in the D1/D2 sequences. Blastobotrys xishuangbannaensis f.a., sp. nov. is closely related to B. nivea, B. elegans and B. aristata but the formation of ascospores was not observed on various sporulation media, and it differed from its relatives by 6.2-8.5 % divergence (34-43 substitutions and 2-6 gaps) in the D1/D2 sequences. The holotype of Blastobotrys baotianmanensis sp. nov. is NYNU 1581 and the holotype of Blastobotrys xishuangbannaensis f.a., sp. nov. is NYNU 181030.
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  • 文章类型: Journal Article
    生物能源是未来最有可能取代化石能源的能源,纤维素生物质的降解仍需引起更多关注,和更可评价的纤维素分解菌分离将为这一领域奠定基础。秦岭具有独特的生物多样性,作为纤维素降解细菌的有希望的来源,表现出值得注意的特性。因此,这项工作的目的是寻找潜在的纤维素分解细菌,并验证从选定的强大细菌中克隆纤维素酶的可能性。
    在本研究中,从秦岭腐烂木材中筛选并鉴定了55种潜在的纤维素分解菌。通过对不同纤维素底物的纤维素酶活性及降解效果的研究,进一步应用嗜甲基芽孢杆菌1EJ7、枯草芽孢杆菌1AJ3和枯草芽孢杆菌3BJ4水解小麦秸秆,玉米秸秆和柳枝草,结果表明,嗜甲基芽孢杆菌1EJ7是最主要的细菌,这也表明芽孢杆菌是腐烂木材中主要的纤维素分解菌。此外,扫描电子显微镜(SEM)和X射线衍射分析小麦秸秆的微观形貌和结晶度也证实了显着水解。在确定纤维素酶β-葡萄糖苷酶(243aa)和内切葡聚糖酶(499aa)的目标序列的基础上,成功地从甲基营养芽孢杆菌1EJ7中进行了异源克隆和表达,对纤维素降解具有良好的效果,酶活性为1670.15±18.94U/mL和0.130±0.002U/mL。分别。此外,基于氨基酸序列的分析,发现β-葡萄糖苷酶属于GH16家族,内切葡聚糖酶由GH5家族催化结构域和CBM3家族的碳水化合物结合模块组成。
    根据筛选结果,秦岭腐烂木材中纤维素分解菌的鉴定及降解效果评价,它发现芽孢杆菌是分离菌株中的优势种,和甲基营养芽孢杆菌1EJ7在纤维素降解方面表现最好。同时,首次成功克隆并表达了嗜甲基芽孢杆菌的β-葡萄糖苷酶和内切葡聚糖酶,为纤维素降解及其在工业上的应用研究提供了菌株和重组酶的新材料。
    Cellulosic biomass degradation still needs to be paid more attentions as bioenergy is the most likely to replace fossil energy in the future, and more evaluable cellulolytic bacteria isolation will lay a foundation for this filed. Qinling Mountains have unique biodiversity, acting as promising source of cellulose-degrading bacteria exhibiting noteworthy properties. Therefore, the aim of this work was to find potential cellulolytic bacteria and verify the possibility of the cloning of cellulases from the selected powerful bacteria.
    In present study, 55 potential cellulolytic bacteria were screened and identified from the rotten wood of Qinling Mountains. Based on the investigation of cellulase activities and degradation effect on different cellulose substrates, Bacillus methylotrophicus 1EJ7, Bacillus subtilis 1AJ3 and Bacillus subtilis 3BJ4 were further applied to hydrolyze wheat straw, corn stover and switchgrass, and the results suggested that B. methylotrophicus 1EJ7 was the most preponderant bacterium, and which also indicated that Bacillus was the main cellulolytic bacteria in rotten wood. Furthermore, scanning electron microscopy (SEM) and X-ray diffraction analysis of micromorphology and crystallinity of wheat straw also verified the significant hydrolyzation. With ascertaining the target sequence of cellulase β-glucosidase (243 aa) and endoglucanase (499 aa) were successfully heterogeneously cloned and expressed from B. methylotrophicus 1EJ7, and which performed a good effect on cellulose degradation with enzyme activity of 1670.15 ± 18.94 U/mL and 0.130 ± 0.002 U/mL, respectively. In addition, based on analysis of amino acid sequence, it found that β-glucosidase were belonged to GH16 family, and endoglucanase was composed of GH5 family catalytic domain and a carbohydrate-binding module of CBM3 family.
    Based on the screening, identification and cellulose degradation effect evaluation of cellulolytic bacteria from rotten wood of Qinling Mountains, it found that Bacillus were the predominant species among the isolated strains, and B. methylotrophicus 1EJ7 performed best on cellulose degradation. Meanwhile, the β-glucosidase and endoglucanase were successfully cloned and expressed from B. methylotrophicus for the first time, which provided new materials of both strain and the recombinant enzymes for the study of cellulose degradation and its application in industry.
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  • 文章类型: Journal Article
    During studies on the yeast communities associated with rotting wood in the Xishuangbanna Tropical Rainforest in PR China, four novel yeast strains were found. Phylogenetic analysis based on the concatenated sequences of the D1/D2 domains of the large subunit rRNA gene and the ITS regions showed that these strains represented two novel species in the Candida albicans/Lodderomyces clade. The novel species, represented by strains NYNU 17948 and NYNU 17981, formed a clade with Candida maltosa and Candida baotianmanensis, with 1-1.8% sequence divergence in the D1/D2 domains and 8.9-10% sequence divergence in the ITS regions. The other novel species, represented by NYNU 17105 and NYNU 17763, is most closely related to Candida blackwelliae with 0.7 % sequence divergence in the D1/D2 domains and 6.9 % sequence divergence in the ITS regions. The two novel species could be distinguished from their closest described species in terms of physiological traits. The two novel species are described as Candida yunnanensis sp. nov. (holotype NYNU 17948) and Candida parablackwelliae sp. nov. (holotype NYNU 17763).
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  • 文章类型: Journal Article
    Five strains, NUNU 16637, NYNU 16645, NYNU 1673, NYNU 1680 and NYNU 1689, of a novel ascomycetous yeast were isolated from the Xishuangbanna tropical rainforest, Yunnan Province, PR China. The five strains shared identical sequences in both of the D1/D2 domains of the large subunit rRNA gene and the internal transcribed spacer (ITS) regions. Sequence analysis showed that they represent undescribed yeast species belonging to the genus Wickerhamomyces. They differed from their closest known species, Wickerhamomyces xylosivorus NBRC 111553T, by 3.4 % sequence divergence (14 substitutions and six gaps out of 584 bp) in the D1/D2 domains and by 9.6 % sequence divergence (28 substitutions and 24 gaps over 543 bp) in the ITS regions, respectively. The five strains of novel species reproduced asexually; no sexual reproduction could be found. In contrast to W. xylosivorus, the novel yeast species were able to assimilate l-arabinose, inulin, soluble starch, d-mannitol and citrate, and unable to assimilate trehalose, raffinose, 5-keto-d-gluconate, d-gluconate, ethanol, ethylamine and cadaverine. Growth was observed at 35 °C. The name Wickerhamomyces menglaensis f.a., sp. nov. is proposed to accommodate these strains, with NYNU 1673 as the holotype.
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  • 文章类型: Journal Article
    Three strains of a novel basidiomycetous yeast were isolated from the Xishuangbanna Tropical Rainforest, Yunnan Province, PR China. Sequence analysis of the D1/D2 domains of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) regions indicated that the novel species represents a member of the genus Vanrija. It differed from the most closely related known species, Vanrija albida CBS 2839T, by 1.5 % sequence divergence (seven substitutions and two gaps out of 597 bp) in the D1/D2 domains and by 7.4 % sequence divergence (17 substitutions and 20 gaps over 495 bp) in the ITS regions, respectively. The three strains of the novel species reproduced asexually, and no mating could be found. In contrast to V. albida, the novel yeast species was able to assimilate d-glucosamine, inulin, erythritol and galactitol and unable to assimilate raffinose. The name Vanrija jinghongensis sp. nov. is proposed to accommodate these strains, with NYNU 17910T (=CICC 33269=CBS 15229) as the type strain.
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  • 文章类型: Journal Article
    Beetles of the family Passalidae (Coleoptera: Scarabaeoidea) are termed subsocial. The insects inhabit rotten wood as family groups consisting of the parents and their offspring. The Japanese species Cylindrocaulus patalis has the lowest fecundity among passalids because siblicide occurs among the first-instar larvae; accordingly, parental care toward the survived larva is the highest among Passalidae. To clarify the nutritional relationships between the parents and their offspring, we investigated their ability to digest three types of polysaccharides that are components of wood (cellulose and β-1,4-xylan) and fungal cell walls (β-1,3-glucan). Although carboxymethyl-cellulase activity was barely detectable, β-xylosidase, β-glucosidase, β-1,4-xylanase and β-1,3-glucanase activities were clearly detected in both adults and larvae. Because the activities of enzymes that digest β-1,3-glucan were much higher than those for degrading β-1,4-xylan, in both adults and larvae, it is concluded that they are mainly fungivorous. Furthermore, these digestive enzymatic activities in second- and third-instar larvae were much lower than they were in adults. Although all larval instars grew rapidly when fed chewed wood by their parents, larvae ceased growing and died when fed only artificially ground wood meals. We conclude that the larvae are assumed to be provided with chewed predigested wood in which β-1,3-glucan is degraded by parental enzymes.
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  • 文章类型: Journal Article
    THIS STUDY DESCRIBES AND ILLUSTRATES THE LARVAE AND PUPAE OF TWO NORTH AMERICAN DARKLING BEETLES (COLEOPTERA: Tenebrionidae) in the subfamily Stenochiinae, Glyptotus cribratus LeConte from the southeastern United States, and Cibdelis blaschkei Mannerheim from California. Both species inhabit forested regions where adults and larvae occur in soft rotten dry wood of dead branches on living trees or in sections recently fallen from them. Species identity was confirmed by rearing of adults and pupae and the discovery of both in pupal cells with associated exuvia. Specimen label data and notes on habitats are provided. Antipredator defense structures and behaviour are noted for larvae and pupae of both species.
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