In the European Union, salmonellosis is one of the most important zoonoses reported. Poultry meat and egg products are the most common food matrices associated with Salmonella presence. Moreover, wild and domestic animals could represent an important reservoir that could favour the direct and indirect transmission of pathogens to humans. Salmonella spp. can infect carnivorous or omnivorous wild birds that regularly ingest food and water exposed to faecal contamination. Birds kept in captivity can act as reservoirs of Salmonella spp. following ingestion of infected prey or feed. In this paper, we describe the isolation of different Salmonella serovars in several species of raptors hosted in aviaries in an Italian wildlife centre and in the raw chicken necks used as their feed but intended for human consumption. Characterisations of strains were carried out by integrating classical methods and whole genome sequencing analysis. The strains of S. bredeney isolated in poultry meat and birds belonged to the same cluster, with some of them being multidrug-resistant (MDR) and carrying the Col(pHAD28) plasmid-borne qnrB19 (fluoro)quinolone resistance gene, thus confirming the source of infection. Differently, the S. infantis found in feed and raptors were all MDR, carried a plasmid of emerging S. infantis (pESI)-like plasmid and belonged to different clusters, possibly suggesting a long-lasting infection or the presence of additional undetected sources. Due to the high risk of fuelling a reservoir of human pathogens, the control and treatment of feed for captive species are crucial.

Freshwater environments are primary receiving systems of wastewater and effluents, which carry low concentrations of antibiotics and antimicrobial-resistant (AMR) bacteria and genes. Aquatic microbial communities are thus exposed to environmentally relevant concentrations of antibiotics (ERCA) that presumably influence the acquisition and spread of environmental AMR. Here, we analyzed ERCA exposure with and without the additional presence of municipal wastewater treatment plant effluent (W) and swine manure run-off (M) on aquatic biofilm resistomes. Microscopic analyses revealed decreased taxonomic diversity and biofilm structural integrity, while metagenomic analysis revealed an increased abundance of resistance, virulence, and mobile element-related genes at the highest ERCA exposure levels, with less notable impacts observed when solely exposed to W or M effluents. Microbial function predictions indicated increased gene abundance associated with energy and cell membrane metabolism and heavy metal resistance under ERCA conditions. In silico predictions of increased resistance mechanisms did not correlate with observed phenotypic resistance patterns when whole communities were exposed to antimicrobial susceptibility testing. This reveals important insight into the complexity of whole-community coordination of physical and genetic responses to selective pressures. Lastly, the environmental AMR risk assessment of metagenomic data revealed a higher risk score for biofilms grown at sub-MIC antibiotic conditions.

Combinational antiretroviral therapy (cART) suppresses human immunodeficiency virus type 1 (HIV-1) viral replication and pathogenesis in acquired immunodeficiency syndrome (AIDS) patients. However, HIV-1 remains in the latent stage of infection by suppressing viral transcription, which hinders an HIV-1 cure. One approach for an HIV-1 cure is the \"shock and kill\" strategy. The strategy focuses on reactivating latent HIV-1, inducing the viral cytopathic effect and facilitating the immune clearance for the elimination of latent HIV-1 reservoirs. Here, we reported that the H3K4 trimethylation (H3K4me3)-specific demethylase KDM5A/B play a role in suppressing HIV-1 Tat/LTR-mediated viral transcription in HIV-1 latent cells. Furthermore, we evaluated the potential of KDM5-specific inhibitor JQKD82 as an HIV-1 \"shock and kill\" agent. Our results showed that JQKD82 increases the H3K4me3 level at HIV-1 5\' LTR promoter regions, HIV-1 reactivation, and the cytopathic effects in an HIV-1-latent T cell model. In addition, we identified that the combination of JQKD82 and AZD5582, a non-canonical NF-κB activator, generates a synergistic impact on inducing HIV-1 lytic reactivation and cell death in the T cell. The latency-reversing potency of the JQKD82 and AZD5582 pair was also confirmed in peripheral blood mononuclear cells (PBMCs) isolated from HIV-1 aviremic patients and in an HIV-1 latent monocyte. In latently infected microglia (HC69) of the brain, either deletion or inhibition of KDM5A/B results in a reversal of the HIV-1 latency. Overall, we concluded that KDM5A/B function as a host repressor of the HIV-1 lytic reactivation and thus promote the latency and the survival of HIV-1 infected reservoirs.

Cutaneous leishmaniasis caused by different species of Leishmania is transmitted by Phlebotominae sandflies. This disease remains a public health concern in Iran. Therefore, the present study aimed to examine Leishmania infection in sandflies and reservoir rodents in six rural regions of Nahavand, located in western Iran. From May to October 2022, sandflies and rodents were collected and identified at the species level. Additionally, rodents\' skin lesions and earlobe specimens were collected separately for microscopic and molecular examination. All specimens were tested for Leishmania DNA by PCRs targeting the parasite\'s ITS-2 and 18S rRNA gene and positive were Sanger sequenced. A total of 3396 sandflies belonging to seven subgenera and 11 species, i.e., Phlebotomus papatasi (42.7%), P. major (20.6%), P. mascitti (0.3%), P. neglectus (0.2%), P. alexandri (0.2%), P. turanicus (0.3%), Sergentomyia murgabiensis (18.1%), S. dentata (10.5%), S. theodori (5.8%), S. antennata (1.1%), and S. pawlowski (0.1%) were identified. Based on the species population, 29 pools of sandflies were examined for the presence of Leishmania DNA using conventional PCR (cPCR), and individual DNAs were tested when positive. Leishmania major DNA was detected in two P. papatasi and Leishmania sp. in one P. major individual sandfly. This is the first report of Leishmania infection in sandflies from Hamadan province. The captured rodents (n = 61) belonged to four families and seven species, i.e., Arvicola amphibius (37.7%), Mus musculus (29.5%), Microtus socialis (13.1%), Apodemus sylvaticus (11.5%), Talpa davidiana (4.9%), Apodemus witherbyi (1.6%), and Rattus norvegicus (1.6%). Microscopic and molecular examinations of the rodent lesions and earlobes scored negative results. The presence of Leishmania in the Phlebotominae sandflies in Nahavand indicates a potential threat to humans and animals in the region. Regular monitoring and examination of the sandflies\' population and timely diagnosis and treatment of new patients are strongly recommended.

Plastic debris both affects and is affected by the beaches it accumulates on. Most studies of microplastics (MPs) in beach sand are focused on coastal beaches or beaches of large lakes near population centers. Here, we assessed MP pollution at a sandy beach near the outlet of a major flood control reservoir (Sardis Lake) in a relatively unpopulated area in north Mississippi, USA, focusing on two prominent wrack zones and areas in-between. Putative MPs were isolated by density separation and matrix digestion, and then examined using stereomicroscopy, with a subset of samples additionally analyzed by μ-FTIR. MP abundance (particles/kg ± 1 standard error (SE), n = 15) averaged of 590 ± 360, with 950 ± 100 in the lower wrack zone, 540 ± 40 in the upper wrack zone, and 270 ± 30 in areas between; these differences were statistically significant (p < 0.01). The MPs generally had similar size and shape characteristics across sites. The majority were fibers (64%), followed by fragments (23%), beads (7%) and films (6%), with a slightly greater proportion of fibers in the wrack zones compared to areas in-between. The number of MPs rose dramatically with decreasing size. Beads were only found in the < 500 μm size fraction. Clear and blue were the predominant colors for all MPs. A total of 29 different types of polymers were detected, with more than half of the particles being composed of polyethylene and polyamide, followed by poly(methyl methacrylate), polyethylene terephthalate, polycarbonate, polypropylene, and others; although this distribution varied some depending on size fraction and location. Because there are no major wastewater discharges into Sardis Lake, the source of the MPs is likely degradation of carelessly discarded plastic, as well as atmospheric fallout. Overall, we found that MP concentrations were highest in the wrack zones and influenced by rates and duration of discharge from the reservoir. Thus, like coastal beaches, wrack zones on freshwater beaches along or downstream of reservoirs accumulate both macro- and micro-plastics and are prime locations for plastic cleanup. Finally, we show that MPs made from naturally weathered LDPE plastic film are prone to fragmentation during pretreatment procedures, which may result in its overestimation.

Operational demands and the natural inflow of water actively drive biweekly fluctuations in water levels in hydropower reservoirs. These daily to weekly fluctuations could have major effects on methane (CH4) and carbon dioxide (CO2) emissions via release of bubbles from reservoir bottom sediments (ebullition) or organic matter inputs, respectively. The impact of transient fluctuations in water levels on GHG emissions is poorly understood and particularly so in tropical run-of-the-river reservoirs. These reservoirs, characterized by high temperatures and availability of labile organic matter, are usually associated with extensive CH4 generation within bottom sediments. The aim of this study is to determine how water level fluctuations resulting from the operation of the Belo Monte hydropower plant on the Xingu River, eastern Amazon River Basin, affect local CO2 and CH4 emissions. Between February and December 2022, we monitored weekly fluxes and water concentrations of CO2 and CH4 in a site on the margin of the Xingu reservoir. Throughout the study period, fluxes of CO2 and CH4 were 118 ± 137 and 3.62 ± 8.47 mmol m-2 d-1 (average ± 1SD) while concentrations were 59 ± 29.77 and 0.30 ± 0.12 μM, respectively. The fluxes and water concentrations of CO2 were clearly correlated with the upstream discharge, and the variation observed was more closely associated with a seasonal pattern than with biweekly fluctuations in water level. However, CH4 fluxes were significantly correlated with biweekly water level fluctuations. The variations observed in CH4 fluxes occurred especially during the high-water season (February-April), when biweekly water level fluctuations were frequent and had higher amplitude, which increased CH4 ebullition. Reducing water level fluctuations during the high-water season could decrease ebullitive pulses and, consequently, total flux of CH4 (TFCH4) in the reservoir margins. This study underscores the critical role of water level fluctuations in near-shore CH4 emissions within tropical reservoirs and highlights significant temporal variability. However, additional research is necessary to understand how these findings can be applied across different spatial scales.

Thelazia callipaeda (Nematoda: Spirurida: Thelaziidae) parasitizes the eyes of dogs, cats, humans, and various wild mammals, and is transmitted by drosophilid flies. In Japan, T. callipaeda is considered an emerging parasite that has expanded its endemic region northward. However, reports of its detection in mammals other than domestic animals and humans are scarce. This study reports the detection of T. callipaeda in Japanese red fox (Vulpes vulpes japonica), masked palm civet (Paguma larvata), Japanese badger (Meles anakuma), Japanese black bear (Ursus thibetanus japonicus), raccoon (Procyon lotor), Japanese raccoon dog (Nyctereutes viverrinus), domestic dog (Canis lupus familiaris), domestic cat (Felis silvestris catus), and human. Of these, the Japanese red fox, masked palm civet, Japanese badger, and Japanese black bear have been reported as novel host records. Sequence analysis of the cytochrome c oxidase subunit I gene of T. callipaeda revealed two unique lineages specific to Japan, with no regional or host species differences. These results suggest a wide host range for T. callipaeda, highlighting the significant role of wildlife as a reservoir for this parasite in Japan.

Accumulation and subsequent release of nutrients have great potential to trigger algal blooms in lakes and reservoirs. We conducted high vertical resolution (2 m interval) monitoring at ∼monthly intervals over a year for hydrological parameters, Chl-a, ammonium (NH4+), nitrate (NO3-) and different species of phosphorus (P) and manganese (Mn) in a 40-meter-deep subtropical reservoir (Shanmei Reservoir) in Fujian, southern China. In this seasonally stratified reservoir featured with high nutrient loading, the consistent trend in the ratio of dissolved inorganic nitrogen (DIN) to dissolved inorganic phosphorus (DIP) between the euphotic zone and the hypolimnion, coupled with its mirrored correlation with Chl-a concentration indicates that upward flux from the hypolimnion affects phytoplankton growth in the euphotic zone. The monthly variation of the depth-integrated multiple species of N and P indicates that during the stratification period in the hypoxic hypolimnion, approximately 80% of the DIP is removed, leading to a remarkable decoupling phenomenon between NH4+ and DIP. This process effectively increases the ratio of DIN to DIP in the hypolimnion, thereby significantly reducing the potential of algal blooms caused by the upward flux. A robust positive linear correlation between iron-manganese bound phosphorus (CBD-P) and particulate Mn was observed during stratification period implying that DIP was scavenged by sediment-released Mn throughout the water column. Vertical profiles during stratification showed that upward diffusion of Mn2+ facilitated the formation of Mn oxide zones near the oxycline. The most significant decrease in DIP inventory occurs when Mn oxide zones migrate either upwards from the bottom or downwards from the oxycline, indicating that the migration of Mn oxides on the vertical profile is a key factor in the decoupling of NH4+and DIP. Our findings underscore the importance of Mn cycling as an underappreciated DIP self-immobilization process in the water column of reservoirs characterized by high nutrient loading. Furthermore, we propose that denitrification and Mn cycling establish a consecutive feedback mechanism, preventing excessive nutrient accumulation in low oxygen bottom water. In the context of global changes, we anticipate a heightened prominence of this feedback mechanism.

Infectious keratoconjunctivitis (IKC) is an eye disease caused by Mycoplasma conjunctivae that affects domestic and wild caprines, including Iberian ibex (Capra pyrenaica), a medium-sized mountain ungulate. However, its role in IKC dynamics in multi-host communities has been poorly studied. This study assessed M. conjunctivae in Iberian ibex and seasonally sympatric domestic small ruminants in the Natural Space of Sierra Nevada (NSSN), a mountain habitat in southern Spain. From 2015 to 2017, eye swabs were collected from 147 ibexes (46 subadults, 101 adults) and 169 adult domestic small ruminants (101 sheep, 68 goats). Mycoplasma conjunctivae was investigated through real-time qPCR and statistically assessed according to species, sex, age category, year, period, and area. The lppS gene of M. conjunctivae was sequenced and phylogenetically analysed. Mycoplasma conjunctivae was endemic and asymptomatic in the host community of the NSSN. Three genetic clusters were shared by ibex and livestock, and one was identified only in sheep, although each host species could maintain the infection independently. Naïve subadults maintained endemic infection in Iberian ibex, with an epizootic outbreak in 2017 when the infection spread to adults. Wild ungulates are epidemiologically key in maintaining and spreading IKC and other shared diseases among spatially segregated livestock flocks.

We evaluated the HIV-1 DNA reservoir in peripheral blood mononuclear cells (PBMC) and cerebrospinal fluid (CSF) in people with HIV (PWH) and associations to cognitive dysfunction. Using the intact proviral DNA assay (IPDA), an emerging technique to identify provirus that may be the source of viral rebound, we assessed HIV DNA in CSF and PBMC in PWH regardless of antiretroviral therapy (ART). CSF was used as a sampling surrogate for the central nervous system (CNS) as opposed to tissue. IDPA results (3\' defective, 5\' defective, and intact HIV DNA) were analyzed by compartment (Wilcoxon signed rank; matched and unmatched pairs). Cognitive performance, measured via a battery of nine neuropsychological (NP) tests, were analyzed for correlation to HIV DNA (Spearman\'s rho). 11 CSF and 8 PBMC samples from PWH were evaluated both unmatched and matched. Total CSF HIV DNA was detectable in all participants and was significantly higher than in matched PBMCs (p ​= ​0.0039). Intact CSF HIV DNA was detected in 7/11 participants and correlated closely with those in PBMCs but tended to be higher in CSF than in PBMC. CSF HIV DNA did not correlate with global NP performance, but higher values did correlate with worse executive function (p ​= ​0.0440). Intact HIV DNA is frequently present in the CSF of PWH regardless of ART. This further supports the presence of an HIV CNS reservoir and provides a method to study CNS reservoirs during HIV cure studies. Larger studies are needed to evaluate relationships with CNS clinical outcomes.