replication efficiency

  • 文章类型: Journal Article
    戊型肝炎病毒(HEV)是全球急性病毒性肝炎的主要病因。1型HEV(HEV-1)是发展中国家多次爆发的原因,导致孕妇的高死亡率。然而,对HEV-1的研究因其在培养细胞中的不良复制而受到阻碍。从日本暴发性戊型肝炎患者中回收的JE04-1601S菌株在前往印度时感染了HEV-1,在人细胞系中连续传代了12次。细胞培养产生的病毒(第12代;p12)在人类细胞系中有效生长,但在猪细胞中不完全支持复制。使用JE04-1601S_p12作为模板构建全长cDNA克隆。它能够产生一种传染性病毒,在转染的PLC/PRF/5细胞和培养上清液中可检测到病毒蛋白表达。始终如一,在cDNA衍生的JE04-1601S_p12后代的细胞培养中,HEV-1的生长也不完全支持,潜在地概括了体内观察到的HEV-1的窄向性。用于HEV-1及其感染性cDNA克隆的有效细胞培养系统的可用性将有助于研究HEV物种嗜性和HEV-1感染的孕妇中严重肝炎的潜在机制,以及发现和开发更安全的治疗方案。
    Hepatitis E virus (HEV) is a major cause of acute viral hepatitis globally. Genotype 1 HEV (HEV-1) is responsible for multiple outbreaks in developing countries, causing high mortality rates in pregnant women. However, studies on HEV-1 have been hindered by its poor replication in cultured cells. The JE04-1601S strain recovered from a Japanese patient with fulminant hepatitis E who contracted HEV-1 while traveling to India was serially passaged 12 times in human cell lines. The cell-culture-generated viruses (passage 12; p12) grew efficiently in human cell lines, but the replication was not fully supported in porcine cells. A full-length cDNA clone was constructed using JE04-1601S_p12 as a template. It was able to produce an infectious virus, and viral protein expression was detectable in the transfected PLC/PRF/5 cells and culture supernatants. Consistently, HEV-1 growth was also not fully supported in the cell culture of cDNA-derived JE04-1601S_p12 progenies, potentially recapitulating the narrow tropism of HEV-1 observed in vivo. The availability of an efficient cell culture system for HEV-1 and its infectious cDNA clone will be useful for studying HEV species tropism and mechanisms underlying severe hepatitis in HEV-1-infected pregnant women as well as for discovering and developing safer treatment options for this condition.
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  • 文章类型: Journal Article
    复制起点的染色质环境被认为影响真核基因组中的DNA复制起始。然而,目前尚不清楚染色质特征如何以及哪些特征控制早期有效(EE)或晚期无效(LI)起源的激发。这里,我们使用位点特异性重组和单基因座染色质分离纯化酿酒酵母中的EE和LI复制起点。使用质谱,我们定义了围绕EE和LI复制起始位点的天然染色质区域的蛋白质组成。除了已知的起源相互作用者,我们发现微管结合Ask1/DASH复合物是起源调节因子。引人注目的是,将Ask1连接到单个起源位点会提高目标染色体结构域的复制时机(RT)。Ask1的目标降解在全球范围内改变了起源子集的RT,可以通过抑制微管动力学来复制。因此,我们的发现通过Ask1/DASH将RT和染色体组织与微管细胞骨架进行机械连接。
    The chromatin environment at origins of replication is thought to influence DNA replication initiation in eukaryotic genomes. However, it remains unclear how and which chromatin features control the firing of early-efficient (EE) or late-inefficient (LI) origins. Here, we use site-specific recombination and single-locus chromatin isolation to purify EE and LI replication origins in Saccharomyces cerevisiae. Using mass spectrometry, we define the protein composition of native chromatin regions surrounding the EE and LI replication start sites. In addition to known origin interactors, we find the microtubule-binding Ask1/DASH complex as an origin-regulating factor. Strikingly, tethering of Ask1 to individual origin sites advances replication timing (RT) of the targeted chromosomal domain. Targeted degradation of Ask1 globally changes RT of a subset of origins, which can be reproduced by inhibiting microtubule dynamics. Thus, our findings mechanistically connect RT and chromosomal organization via Ask1/DASH with the microtubule cytoskeleton.
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  • 文章类型: Journal Article
    根据分类系统,中国流行的猪繁殖与呼吸综合征病毒2(PRRSV2)有4个主要谱系,包括谱系1(类似NADC30),3(类似QYYZ),5.1(VR2332-like)和8(JXA1-like/CH-1a-like),这导致了潜在的重组。在本研究中,2018年在中国江苏省,从患有严重呼吸困难的仔猪中分离出一种名为JS18-3的PRRSV2株的新变体。全长基因组分析表明,JS18-3共有86.5%,87.9%,84.2%,与PRRSVCH-1a的核苷酸相似性为82.2%和86.4%,分别为JXA1、VR2332、QYYZ和NADC30。JS18-3的4871-6635在核苷酸序列中与HP-PRRSV代表性菌株JXA1共享99.3%的最高同一性,表明正在进化到HP-PRRSV。基于全基因组和ORF5的系统发育分析,JS18-3被分类为PRRSV2的经典谱系8。在重组分析中检测到基因组的结构(ORF3)和非结构(NSP2、NSP3)区域中的基因组断裂点。JS18-3是来自谱系8、1和3的重组分离物。与典型的谱系8的JX07相比,在Marc-145细胞和猪肺泡巨噬细胞(PAM)中观察到了由JS18-3引起的复制增强和严重的细胞病变作用。致病性结果表明,接种JS18-3的仔猪表现为持续发热,呼吸困难,严重的微观肺部病变和淋巴结充血。该研究表明,PRRSV2的谱系8通过基因重组和突变参与持续进化,导致中国接种疫苗的猪爆发。
    There are four major porcine reproductive and respiratory syndrome virus 2 (PRRSV2) lineages circulating in China based on classification system, including lineages 1 (NADC30-like), 3 (QYYZ-like), 5.1 (VR2332-like) and 8 (JXA1-like/CH-1a-Like), which leads to the potential recombination. In the present study, a novel variant of PRRSV2 strain named JS18-3 was isolated from piglets suffering severe breathing difficulties in Jiangsu Province of China in 2018. Full-length genome analysis indicated that JS18-3 shared 86.5%, 87.9%, 84.2%, 82.2% and 86.4% nucleotide similarity with PRRSVs CH-1a, JXA1, VR2332, QYYZ and NADC30, respectively. 4871-6635 of JS18-3 shared the highest identity of 99.3% in nucleotide sequence with HP-PRRSV representative strain JXA1 indicating ongoing evolution to HP-PRRSV. JS18-3 was classified into classical lineage 8 of PRRSV2 based on phylogenetic analysis of complete genome and ORF5. Genomic break points in structural (ORF3) and non-structural (NSP2, NSP3) regions of genomes were detected in recombination analysis. JS18-3 is a recombinant isolate from lineages 8, 1 and 3. Replication enhancement and severe cytopathic effects caused by JS18-3 were observed in Marc-145 cells and porcine alveolar macrophages (PAMs) as compared to JX07, a typical strain of lineage 8. Pathogenicity results indicated that piglets inoculated with JS18-3 presented persistent fever, dyspnoea, serious microscopic lung lesions and lymph node congestion. The study suggests that lineage 8 of PRRSV2 is involved in continuing evolution by genetic recombination and mutation leading to outbreaks in vaccinated pigs in China.
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  • 文章类型: Journal Article
    背景:PRRSV是一种引起母猪肺损伤和流产的感染性疾病。子宫内膜与胎儿胎盘界面的细胞凋亡是引起流产的关键因素。先前的研究证实PRRSV可以引起巨噬细胞的凋亡,但在猪子宫内膜上皮细胞(PECs)中很少产生明显的变化。最近,PRRSV诱导的流产归因于胎儿胎盘和子宫内膜上皮细胞(Sn和CD163)凋亡。然而,由于猪子宫内膜上皮细胞(PEC)的限制,流产的机制仍未揭示。这项研究的目的是建立一个稳定的永生化PECs系,并利用它来揭示流产机制。
    结果:在这项研究中,通过差异消化收获高纯度的初级PEC,并通过CK18、ERα和PR染色证实其特征。然后通过转染表达SV40大T抗原的慢病毒载体使细胞永生化。pECs品系在嘌呤霉素筛选后获得。通过细胞生长曲线和细胞周期测定评估细胞系的增殖。细胞系表现出比原代细胞更快的增殖能力。通过Westernblot评估细胞系的生物学特性,核型分析和染色,证实该细胞系保留了子宫内膜特征。最后,评估PRRSV敏感性;Sn和CD163的表达表明原代PEC和细胞系均对PRRSV敏感。PRRSV感染试验表明,感染的PEC细胞系中凋亡率明显增加,这表明了它的易感性。
    结论:新构建的细胞系是研究PRRSV引起的流产机制的有用工具。
    BACKGROUND: PRRSV is an infectious illness causing lung injury and abortion in sows. Cells apoptosis in the interface between the endometrium and fetal placenta is a crucial factor causing abortion. Previous study confirmed PRRSV could cause apoptosis of macrophages but rarely produced an obvious change in porcine endometrial epithelial cells (PECs). Recently, PRRSV-induced abortion was attributed to fetal placental and endometrium epithelial cells (Sn+ and CD163+) apoptosis. However, the mechanism of abortion is still unrevealed because of the limit of porcine endometrium epithelial cells (PEC). The aim of this study was to establish a stable immortalized PECs lines and use it to reveal the abortion mechanism.
    RESULTS: In this study, highly purified primary PECs were harvested through differential digestion, and their characteristics were confirmed by CK18, ERɑ and PR staining. Cells were then immortalized by transfecting a lentiviral vector that expressed SV40 large T antigen. PECs lines were obtained after puromycin screening. Proliferation of cell line was evaluated by cell growth curve and cell cycle assays. Cell lines exhibited faster proliferation capacity than primary cells. Biological characteristics of cell line were assessed by Western blot, karyotype analysis and staining, which confirmed that the cell line retained the endometrium characteristics. Finally, PRRSV sensitivity was assessed; expression of Sn and CD163 indicated that primary PECs and cell lines were all potentially sensitive to PRRSV. PRRSV infection tests showed an obvious increase in apoptotic rate in the infected PEC cell line, which suggested its susceptibility.
    CONCLUSIONS: The newly constructed cell line is a useful tool for studying the mechanism of abortion caused by PRRSV.
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  • 文章类型: Journal Article
    基因型3型戊型肝炎病毒(HEV)感染通常与轻度疾病相关。然而,最近从重型肝炎患者中鉴定出8株基因型3型HEV分离株.重要的是,三个突变(S605P,I978V和V1213A)在这些基因型3分离株中被发现是典型的基因型4HEV,有时与更严重的肝炎有关。因此,在这项研究中,我们试图确定这些独特的突变是否有助于增强病毒复制,从而导致潜在的严重疾病。
    在缺乏有效的细胞培养系统来研究突变对HEV复制的影响的情况下,我们用Renilla荧光素酶(Rluc)作为报告基因开发了基因型3HEV复制子,随后用它来构建许多突变体,包括swMu-1(V1213A),swMu-2(Q1246H),swMu-3(V1213A和Q1246H),swMu-4(S605P和I978V),和swMu-5(V1213A,S605P和I978V)。将来自突变复制子的RNA转录物转染到Huh7S10-3肝细胞中以测量突变对HEV复制效率的影响。
    结果表明,与其他突变体相比,V1213A突变体的HEV复制效率降低最高。V1213A和S605P+I978V突变具有累积性,如果没有协同作用,对HEV复制的影响。与野生型HEVRluc复制子相比,Q1246H突变体降低了HEV复制,但比V1213A突变体复制更好。氨基酸残基V1213有利于基因型3和4HEV菌株的复制,但不是基因型1HEV。
    结果表明,V1213A突变减少了HEV复制,但可能与报告的由含有该突变的基因型3HEV分离株引起的严重肝炎无关.
    Genotype 3 hepatitis E virus (HEV) infection is generally associated with mild disease. However, recently eight genotype 3 HEV isolates were identified from patients with severe hepatitis. Importantly, three mutations (S605P, I978V and V1213A) in these genotype 3 isolates were found to be typical of genotype 4 HEV, which is sometime associated with more severe hepatitis. Therefore in this study we seek to determine if these unique mutations contribute to enhanced virus replication and thus potentially severe disease.
    In the lack of an efficient cell culture system to study the effect of mutations on HEV replication, we developed a genotype 3 HEV replicon with Renilla luciferase (Rluc) as reporter and subsequently used it to construct numerous mutants, including swMu-1 (V1213A), swMu-2 (Q1246H), swMu-3 (V1213A and Q1246H), swMu-4 (S605P and I978V), and swMu-5 (V1213A, S605P and I978V). RNA transcripts from mutant replicons were transfected into Huh7 S10-3 liver cells to measure the effect of mutations on HEV replication efficiency.
    The results showed that the V1213A mutant had the highest reduction in HEV replication efficiency than other mutants. The V1213A and S605P + I978V mutations have a cumulative, if not synergistic, effect on HEV replication. The Q1246H mutant decreased HEV replication compared to the wild-type HEV Rluc replicon but replicated better than the V1213A mutant. The amino acid residue V1213 favors the replication of both genotypes 3 and 4 HEV strains, but not genotype 1 HEV.
    The results suggested that the V1213A mutation reduced HEV replication, but is likely not associated with the reported severe hepatitis caused by genotype 3 HEV isolates containing this mutation.
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  • 文章类型: Journal Article
    高致病性猪繁殖与呼吸综合征病毒(HP-PRRSV)给我国养猪业造成了巨大的经济损失。了解与HP-PRRSV毒力相关的分子基础对于有效控制临床感染和疾病至关重要。在目前的研究中,我们基于HP-PRRSVJXwn06和LP-PRRSVHB-1/3.9之间的差异氨基酸位点,在nsp9和nsp10中构建并拯救了一系列突变病毒.分析了肺泡巨噬细胞(PAMs)的复制效率和突变病毒对仔猪的致病性。我们的结果表明,nsp9的586中Thr突变为Ala,592中Ser突变为Thr降低了HP-PRRSV在PAMs中的复制效率,并能减弱其对仔猪的毒力,表明nsp9的586和592残基是确定中国HP-PRRSV对仔猪致命毒力的天然关键位点。
    The highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) has caused huge economic losses to the swine industry in China. Understanding the molecular basis in relation to the virulence of HP-PRRSV is essential for effectively controlling clinical infection and disease. In the current study, we constructed and rescued a serial of mutant viruses in nsp9 and nsp10 based on the differential amino acid sites between HP-PRRSV JXwn06 and LP-PRRSV HB-1/3.9. The replication efficiency in pulmonary alveolar macrophages (PAMs) and the pathogenicity of the mutant viruses for piglets were analyzed. Our results showed that the mutation of Thr to Ala in 586 and Ser to Thr in 592 of nsp9 decreased the replication efficiency of HP-PRRSV in PAMs, and could attenuate its virulence for piglets, suggesting that the residues 586 and 592 of nsp9 are critical sites natively in determining the fatal virulence of the Chinese HP-PRRSV for piglets.
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