real‐time PCR

  • 文章类型: Journal Article
    本研究的目的是评估不同功率的635nm二极管激光对从颊脂肪垫获得的未分化间充质干细胞的影响。人口腔脂肪干细胞在含有10%FBS的DMEM中培养,青霉素,和链霉素在5%CO2和95%湿度下。细胞在96孔板中培养,24小时后,除了具有相同能量密度4J/cm2的对照组外,还以200、300、400和500mW功率的四组进行了635nm二极管激光的激光照射。在照射后2天和4天进行MTT和流式细胞术测定以评估细胞增殖和活力。茜素红检测和实时PCR(OPN,OCN,ALP,和RUNX-2基因)进行评估成骨分化。根据MTT测定,635nm二极管激光的上述功率对细胞增殖均无显著影响。与第4天的对照组相比,用400mW和500mW的功率照射的细胞显著显示出更多数量的坏死细胞。与所有组相比,用300mW功率照射的细胞显着显示出更大量的结节形成。这项研究的结果表明,能量密度为4J/cm2的635nm二极管激光在300mW的功率下应用于颊脂肪垫间充质干细胞时具有诱导成骨分化的积极作用。
    The purpose of this study was to evaluate the effects of 635 nm diode laser with different powers on undifferentiated mesenchymal stem cells obtained from buccal fat pad. Human buccal fat stem cells were cultured in DMEM containing 10% FBS, penicillin, and streptomycin under 5% CO2 and 95% humidity. Cells were cultured in 96-well plate and 24 h later, laser irradiation with 635 nm diode laser was performed in four groups of 200, 300, 400, and 500 mW powers in addition to the control group with the same energy density of 4 J/cm2. MTT and flow cytometry assay was performed to evaluate cell proliferation and viability on 2 and 4 days after irradiation. Alizarin red assay and real-time PCR (OPN, OCN, ALP, and RUNX-2 genes) was performed to evaluate osteogenic differentiation. According to the MTT assay, none of the mentioned powers of 635 nm diode laser had significant effect on cell proliferation. Cells irradiated with power of 400 mW and 500 mW significantly showed a greater number of necrotic cells compared to the control group in Day 4. Cells irradiated with 300 mW power significantly exhibited a greater amount of nodule formation compared to all groups. Results of this study indicated that 635 nm diode laser with energy density of 4 J/cm2 has a positive effect inducing osteogenic differentiation when applying with a power of 300 mW in buccal fat pad mesenchymal stem cells.
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  • 文章类型: Journal Article
    背景:假伯克霍尔德菌,一种环境腐生菌,在人类和动物中引起类lioidosis。它在1967年至1976年之间在伊朗的小反刍动物中首次发现,马科,环境和人类。没有进行后续研究来确定该病原体在该国的存在和流行程度。
    目的:本研究旨在监测伊朗戈列斯坦省反刍动物种群中假单胞菌的存在,这在很大程度上取决于牧场。反刍动物可以作为哨兵,以指示环境中细菌的存在及其对人类健康的潜在影响。
    方法:家羊的肝和肺脓肿,对三个工业屠宰场和三个常规屠宰场中的牛和山羊进行了采样和分析,使用23S核糖体DNA聚合酶链反应(rDNAPCR),引物CVMP23-1和CVP-23-2用于假单胞菌,洋葱伯克霍尔德菌和越南伯克霍尔德菌,以及B.pseudomallei特异性TTS1实时PCR,以及微生物和生化检测。
    结果:在97只动物样本中,只有14人(15%)对23SrDNAPCR检测呈阳性。然而,使用TTS1实时PCR和微生物学和生化分析进行的随访评估未证实样本中是否存在假单胞菌.
    结论:尽管在当前的调查中没有检测到假双歧杆菌,进行基于屠宰场的反刍动物监测是一种具有成本效益的单一健康方法来监测致病性伯克霍尔德菌。制定伯克霍尔德氏菌感染的临床和实验室良好实践标准对于OneHealth监测至关重要。
    BACKGROUND: Burkholderia pseudomallei, an environmental saprophyte bacterium, causes melioidosis in humans and animals. It was first discovered in Iran between 1967 and 1976 in small ruminants, equines, environments and humans. No subsequent studies have been conducted to determine the existence and prevalence of this pathogen in the country.
    OBJECTIVE: The present study aims to monitor the presence of B. pseudomallei in the ruminant population of the Golestan province of Iran, which largely depends on pastures. The ruminants can serve as sentinels to indicate the presence of the bacteria in the environment and its potential impact on human health in the One Health triad.
    METHODS: Liver and lung abscesses from domestic sheep, cattle and goats in three industrial and three conventional slaughterhouses were sampled and analysed using 23S ribosomal DNA polymerase chain reaction (rDNA PCR) with primers CVMP 23-1 and CVP-23-2 for B. pseudomallei, Burkholderia cepacia and Burkholderia vietnamiensis, as well as B. pseudomallei-specific TTS1 real-time PCR, along with microbiological and biochemical assays.
    RESULTS: Out of the 97 animals sampled, only 14 (15%) tested positive for 23S rDNA PCR. However, the follow-up evaluation using TTS1 real-time PCR and microbiological and biochemical assays did not confirm the presence of B. pseudomallei in the samples.
    CONCLUSIONS: Although B. pseudomallei was not detected in the current survey, conducting abattoir-based surveillance of ruminants is a cost-effective One Health approach to monitor pathogenic Burkholderia. Developing standards of clinical and laboratory good practices for Burkholderia infections is crucial for One Health surveillance.
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  • 文章类型: Journal Article
    急性脑炎综合征(AES)是印度的主要公共卫生问题,因为目前的测试算法在大多数情况下病因仍然未知。我们旨在研究日本脑炎(JE)的发病率,并确定非JEAES病例的病因,以开发基于证据的测试算法。通过ELISA和聚合酶链反应(PCR)检测脑脊液(CSF)样品中的日本脑炎病毒。对登革热进行了多重实时PCR,基孔肯雅,西尼罗河,Zika,肠道病毒,爱泼斯坦巴尔病毒,单纯疱疹病毒,腺病毒,巨细胞病毒,疱疹病毒6型,副病毒,细小病毒B19,水痘带状疱疹病毒,斑疹伤寒,立克次体物种,钩端螺旋体,沙门氏菌种类,肺炎链球菌,流感嗜血杆菌,脑膜炎奈瑟菌,疟原虫物种和通过ELISA检测腮腺炎和麻疹病毒。在3173个脑脊液样本中,461例(14.5%)JE阳性。在334个非JEAES案例中,66.2%,即。斑疹伤寒(25.7%),腮腺炎(19.5%),麻疹(4.2%),细小病毒B19(3.9%)疟原虫(2.7%),HSV1和2(2.4%),EBV和肺炎链球菌(各2.1%),沙门氏菌和HHV6(各1.2%)占主导地位。因此,改进的监测系统和我们建议的扩展测试算法可以改善印度AES潜在可治疗感染因子的诊断。
    Acute encephalitis syndrome (AES) is a major public health concern in India as the aetiology remains unknown in the majority of cases with the current testing algorithm. We aimed to study the incidence of Japanese encephalitis (JE) and determine the aetiology of non-JE AES cases to develop an evidence-based testing algorithm. Cerebrospinal fluid (CSF) samples were tested for Japanese encephalitis virus by ELISA and polymerase chain reaction (PCR). Multiplex real-time PCR was done for Dengue, Chikungunya, West Nile, Zika, Enterovirus, Epstein Barr Virus, Herpes Simplex Virus, Adenovirus, Cytomegalovirus, Herpesvirus 6, Parechovirus, Parvovirus B19, Varicella Zoster Virus, Scrub typhus, Rickettsia species, Leptospira, Salmonella species, Streptococcus pneumoniae, Haemophilus influenzae, Neisseria meningitidis, Plasmodium species and by ELISA for Mumps and Measles virus. Of the 3173 CSF samples, 461 (14.5%) were positive for JE. Of the 334 non-JE AES cases, 66.2% viz. Scrub typhus (25.7%), Mumps (19.5%), Measles (4.2%), Parvovirus B19 (3.9%) Plasmodium (2.7%), HSV 1 and 2 (2.4%), EBV and Streptococcus pneumoniae (2.1% each), Salmonella and HHV 6 (1.2% each) were predominant. Hence, an improved surveillance system and our suggested expanded testing algorithm can improve the diagnosis of potentially treatable infectious agents of AES in India.
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  • 文章类型: Journal Article
    目的:非小细胞肺癌(NSCLC)患者的全面分子分析对于管理现代靶向治疗至关重要。这项研究旨在建立利用实时PCR对最小量的支气管超声引导(EBUS)抽吸物进行快速,全面的分析的可行性,预测分析的组织节约途径。
    方法:从NSCLC患者倾析500μL体积的EBUS抽吸物和固定剂,和80μL(<所接收的总样本的1%)用于分析。用于表皮生长因子受体(EGFR)突变的BiocartisIdylla™药筒,KRAS突变和GeneFusion盒(ALK,ROS1,RET,NTRK1/2/3重排和MET14外显子跳跃)分析了每种情况,以根据英国指南提供有关主要临床相关靶标的分子数据。
    结果:共纳入62例病例;所有病例均成功进行了DNA分析(EGFR和KRAS试剂盒)。RNA分析(GeneFusioncartridge)在51个初始方法中的42个(82%)是成功的,11个中的11个(100%)通过修改后的协议获得了成功的结果。总之,23个KRAS突变(37%),鉴定出5个EGFR突变(8%)和1个ROS融合(2%)。从样本接收到分子读出的平均时间为5小时。
    结论:利用Idylla™平台的实时PCR是快速的,利用最小量的组织,并提供准确的结果。我们建议,这是一种有用的辅助方法,可在紧急临床需求或EBUS吸出的NGS组织数量不足的情况下与下一代测序(NGS)一起使用。
    OBJECTIVE: Comprehensive molecular analysis for patients with non-small-cell lung carcinoma (NSCLC) is essential for managing modern targeted therapies. This study sought to establish the feasibility of utilising real-time PCR to perform rapid and comprehensive profiling on minimal amounts of endobronchial ultrasound-guided (EBUS) aspirates as a fast, tissue-sparing route of predictive profiling.
    METHODS: A volume of 500 μL of EBUS aspirate and fixative from patients with NSCLC was decanted, and 80 μL (<1% of total specimen received) was utilised for analysis. Biocartis Idylla™ cartridges for epidermal growth factor receptor (EGFR) mutations, KRAS mutations and a GeneFusion cartridge (ALK, ROS1, RET, NTRK1/2/3 rearrangements & MET 14 exon skipping) were analysed for each case to provide molecular data on the main clinically relevant targets as per UK guidelines.
    RESULTS: A total of 62 cases were included; all of which had successful DNA analysis (EGFR and KRAS cartridges). RNA analysis (GeneFusion cartridge) was successful for 42 of 51 (82%) with initial approach, with 11 of 11 (100%) achieving a successful result with modified protocol. In all, 23 KRAS mutations (37%), 5 EGFR mutations (8%) and 1 ROS fusion (2%) were identified. Average time from specimen receipt to molecular read-out was 5 h.
    CONCLUSIONS: Real-time PCR utilising the Idylla™ platform is rapid, utilises minimal amounts of tissue and provides accurate results. We propose this is a useful ancillary method to utilise alongside next-generation sequencing (NGS) in cases of urgent clinical requirement or EBUS aspirates with inadequate quantities of tissue for NGS.
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  • 文章类型: Journal Article
    目的:我们试图评估大脑粘菌(Mc)的准确和可重复检测,旋转疾病的病原体,通过使用巢式聚合酶链反应(nPCR)和三个先前建立的实时定量PCR(qPCR)测定:K18S(Kelley18S),C18S(Cavender18S),和Hsp70(热休克蛋白70)。我们使用“适合目的”方法结合实验室内和实验室间测试来确定一种分子测试方法,该方法等同于目前接受的McnPCR程序。
    方法:使用实验室内和实验室间测试的组合来比较分析性能,该测试使用合成块以及天然和实验感染的鱼组织。还使用所有三种测定法测试了代表地理上不同位置的北美分离株。
    结果:K18S和C18S测定显示出高测定灵敏度,样品复制的实验室内和实验室间可重复性,和可重复识别跨多个实验室的所有测试样品。相比之下,在实验室内和实验室间检测中,Hsp70检测未能在低DNA浓度下检测到多个阳性样本.当测试地理上不同的Mc分离物时,K18S测定是证明完美检测准确性的唯一程序。结果表明,K18S测定在可变测试条件下是稳健的,比C18S和Hsp70检测更准确,并提供与美国渔业协会-鱼类健康部分(AFS-FHS)蓝皮书中描述的当前接受的nPCR确认测定“黄金标准”相当的检测能力。
    结论:世界动物卫生组织验证途径的“适合目的”方法和初步完成证明K18S测定法为Mc测试提供了替代方法。这项工作为将K18S测定纳入AFS-FHS蓝皮书作为Mc的标准化测试程序提供了基础。
    OBJECTIVE: We sought to evaluate accurate and reproducible detection of Myxobolus cerebralis (Mc), the causative agent of whirling disease, by using nested polymerase chain reaction (nPCR) and three previously established real-time quantitative PCR (qPCR) assays: K18S (Kelley 18S), C18S (Cavender 18S), and Hsp70 (heat shock protein 70). We used a \"fit for purpose\" approach combined with intra- and interlaboratory testing to identify a molecular testing method that would be equivalent to the currently accepted nPCR procedure for Mc.
    METHODS: Assay performance was compared using a combination of intra- and interlaboratory testing that used synthetic gBlocks along with naturally and experimentally infected fish tissue. North American isolates representing geographically distinct locations were also tested using all three assays.
    RESULTS: The K18S and C18S assays exhibited high assay sensitivity, intra- and interlaboratory repeatability of sample replicates, and reproducible identification of all test samples across multiple laboratories. In contrast, the Hsp70 assay failed to detect several positive samples at low DNA concentrations during intra- and interlaboratory testing. The K18S assay was the only procedure that demonstrated perfect detection accuracy when testing geographically distinct Mc isolates. Results demonstrated the K18S assay is robust under variable test conditions, is more accurate than the C18S and Hsp70 assays, and provides detection capabilities equivalent to those of the currently accepted nPCR confirmation assay \"gold standard\" that is described in the American Fisheries Society-Fish Health Section (AFS-FHS) Blue Book.
    CONCLUSIONS: The \"fit for purpose\" approach and preliminary completion of the World Organization for Animal Health validation pathway demonstrate that the K18S assay provides an alternate method for Mc testing. This work provides the foundation for acceptance of the K18S assay into the AFS-FHS Blue Book as a standardized test procedure for Mc.
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  • 文章类型: Journal Article
    随着st鱼繁殖的激增,他们的饮食中对增长刺激剂的需求增加。本研究旨在确定日粮壳聚糖对生长性能的影响。全身近距离构图,生长相关基因表达,和幼年Acipenserstellatus的肠道组织学。用含0(对照)的日粮饲喂平均体重为31.90±0.73g的180个星虫幼鱼,1.5、3.0、4.5和6.0g壳聚糖。kg-1基本饮食八周。研究结果表明,随着壳聚糖浓度的升高,生长性能显着提高。此外,壳聚糖补充上调生长激素基因在脑和肝组织中的表达。在肝脏样本中,胰岛素样生长因子-1基因在6.0g壳聚糖中表达最明显。kg-1,而在大脑样本中,在4.5和6.0g壳聚糖中均观察到峰表达。kg-1处理。虽然全身近端成分保持相对稳定,随着壳聚糖剂量的增加,全身脂质显着下降。肠绒毛尺寸,高度和宽度,与对照组相比,在补充壳聚糖的组中扩增。总之,壳聚糖补充剂在增强生长性能方面显示出希望,细化肠道形态,增强生长相关基因的表达。对增重和特定生长速率的多项式回归分析表明,星虫的最佳日粮壳聚糖需要量为5.32和5.21g。kg-1,分别。
    As sturgeon breeding has proliferated, there has been a heightened demand for growth stimulators in their diets. This study aimed to determine the impact of dietary chitosan on growth performance, whole-body proximate composition, growth-related gene expression, and intestinal histology in juvenile Acipenser stellatus. A total of 180 A. stellatus juveniles with an average weight of 31.90 ± 0.73 g were fed with diets containing 0 (control), 1.5, 3.0, 4.5, and 6.0 g chitosan.kg-1 basic diet for eight weeks. The findings revealed a significant enhancement in growth performance with rising chitosan concentrations. Furthermore, chitosan supplementation upregulated the expression of the growth hormone gene in both brain and liver tissues. In liver samples, the most pronounced expression of the insulin-like growth factor-1 gene was noted at 6.0 g chitosan.kg-1, while in brain samples, peak expressions were observed in both the 4.5 and 6.0 g chitosan.kg-1 treatments. While the whole-body proximate composition remained relatively stable, there was a notable decrease in whole-body lipids with the escalation of chitosan dosage. Intestinal villi dimensions, both height and width, were amplified in the chitosan-supplemented groups compared to controls. In summation, chitosan supplementation showed promise in bolstering growth performance, refining intestinal morphology, and enhancing growth-related gene expression. Analysis of the polynomial regression of weight gain and specific growth rate revealed that the optimum dietary chitosan requirements in A. stellatus were 5.32 and 5.21 g chitosan.kg-1, respectively.
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  • 文章类型: Journal Article
    包括虾在内的几种甲壳类动物会改变特定游离氨基酸的量以调节其体内的渗透压。Kuruma虾日本对虾也随着环境盐度的增加而增加腹肌中丙氨酸(Ala)的浓度。在本研究中,为了阐明库鲁玛虾Ala积累随盐度变化的机制,我们克隆了编码丙氨酸转氨酶(ALT)的基因,一种参与Ala生物合成的酶,并检查了其表达谱。发现库鲁玛虾ALT1全长cDNA由3,301bp组成,编码514个氨基酸,并且所有对ALT活性重要的氨基酸残基都是保守的。系统发育分析还表明,本研究中克隆的ALT基因被归类为ALT1。此外,我们检测了ALT1基因在适应17‰的库鲁玛虾腹肌和肝胰腺中的表达水平,34‰,和40‰的盐度,结果表明,适应条件为40‰的虾两个组织中ALT1基因的mRNA水平显着高于17‰12h的水平(p<0.05)。适应超过24小时的虾腹肌中ALT1基因的mRNA水平随着环境盐度的增加而趋于增加。这些结果表明,ALT1负责库鲁玛虾腹肌中游离Ala浓度的增加,以调节高盐度下的渗透压。
    Several crustaceans including shrimps change the amount of specific free amino acids to regulate the osmotic pressure in their bodies. Kuruma shrimp Penaeus japonicus also increases the concentration of alanine (Ala) in the abdominal muscle following the increase of environmental salinity. In the present study, to elucidate the mechanisms of changes in Ala accumulation of kuruma shrimp depending on salinity, we cloned the gene encoding alanine aminotransferase (ALT), an enzyme involved in Ala biosynthesis, and examined its expression profile. It was found that the full-length kuruma shrimp ALT1 cDNA consisted of 3,301 bp, encoding 514 amino acids, and that all amino acid residues important for ALT activity were conserved. Phylogenetic analysis also indicated that the ALT gene cloned in this study was classified as ALT1. Moreover, we examined the expression levels of the ALT1 gene in the abdominal muscle and the hepatopancreas of kuruma shrimp acclimated at 17‰, 34‰, and 40‰ salinities, resulting that the mRNA levels of the ALT1 genes in both tissues of the shrimp acclimated at 40‰ were significantly higher than those at 17‰ for 12 h (p < 0.05). The mRNA levels of the ALT1 gene in the abdominal muscle of the shrimp acclimated for more than 24 h tended to increase following the increase of environmental salinity. These results indicate that ALT1 is responsible for the increase of free Ala concentration in the abdominal muscle of kuruma shrimp to regulate osmotic pressure at high salinity.
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  • 文章类型: Journal Article
    禽肉中沙门氏菌污染的患病率越来越高,这强调了适当的预测微生物模型对估计沙门氏菌生长行为的重要性。进行这项研究是为了评估鸡汁作为预测沙门氏菌行为的模型系统的潜力。在熟和生鸡肉产品中,并评估其预测交叉污染情景的能力。将四种沙门氏菌血清型的混合物接种到鸡汁中,鸡肉片,地上的鸡肉,和鸡肉馅饼,随后在10、15、20和25°C下孵育39小时。沙门氏菌的数量。在每个样品中使用实时聚合酶链反应进行测定.将生长曲线拟合到原始Baranyi和Roberts模型中以获得生长参数。使用二级Ratkowsky的平方根模型描述了温度与生长参数之间的相互作用。将鸡汁模型产生的预测结果与从其他鸡肉模型获得的结果进行比较。此外,鸡汁模型的参数用于预测沙门氏菌。六种最坏情况交叉污染情况下的数字。使用从-1.0(故障-安全)到0.5(故障-危险)日志的可接受预测区评估鸡汁模型的性能。鸡汁模型在可接受范围内准确预测所有观察到的数据点,故障安全区(75%)附近的残差分布比故障危险区(25%)附近的残差分布更宽。这项研究为鸡肉产品中沙门氏菌生长建模的新方法提供了有价值的见解,通过制定战略干预措施对食品安全产生影响。实际应用:这项研究的结果对食品工业具有重要意义,因为鸡汁可能是预测不同鸡肉产品中沙门氏菌行为的有用工具,从而通过制定战略干预措施降低食源性疾病的风险。然而,重要的是要认识到,对鸡汁模型进行一些修改对于准确模拟所有现实生活条件是必要的,因为多种因素,特别是与食品加工相关的因素,在不同的产品之间可能会有所不同。
    The increasing prevalence of Salmonella contamination in poultry meat emphasizes the importance of suitable predictive microbiological models for estimating Salmonella growth behavior. This study was conducted to evaluate the potential of chicken juice as a model system to predict the behavior of Salmonella spp. in cooked and raw chicken products and to assess its ability to predict cross-contamination scenarios. A cocktail of four Salmonella serovars was inoculated into chicken juice, sliced chicken, ground chicken, and chicken patties, with subsequent incubation at 10, 15, 20, and 25°C for 39 h. The number of Salmonella spp. in each sample was determined using real-time polymerase chain reaction. Growth curves were fitted into the primary Baranyi and Roberts model to obtain growth parameters. Interactions between temperature and growth parameters were described using the secondary Ratkowsky\'s square root model. The predictive results generated by the chicken juice model were compared with those obtained from other chicken meat models. Furthermore, the parameters of the chicken juice model were used to predict Salmonella spp. numbers in six worst-case cross-contamination scenarios. Performance of the chicken juice model was evaluated using the acceptable prediction zone from -1.0 (fail-safe) to 0.5 (fail-dangerous) log. Chicken juice model accurately predicted all observed data points within the acceptable range, with the distribution of residuals being wider near the fail-safe zone (75%) than near the fail-dangerous zone (25%). This study offers valuable insights into a novel approach for modeling Salmonella growth in chicken meat products, with implications for food safety through the development of strategic interventions. PRACTICAL APPLICATION: The findings of this study have important implications in the food industry, as chicken juice could be a useful tool for predicting Salmonella behavior in different chicken products and thus reducing the risk of foodborne illnesses through the development of strategic interventions. However, it is important to recognize that some modifications to the chicken juice model will be necessary to accurately mimic all real-life conditions, as multiple factors particularly those related to food processing can vary between different products.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    本研究调查了基于分子的PCR技术,以估计墨西哥西南部鱼类病原体的患病率,在那里观察到罗非鱼培养物中的复发性死亡率。分别于2018年、2019年、2020年和2022年采集尼罗罗非鱼内脏器官和皮损样本,采用PCR检测细菌病原体。由于COVID-19大流行,2021年没有采集任何样本。优化实时PCR条件以允许定性可靠地检测来自固定鱼组织的细菌。来自墨西哥西南部太平洋的总共599只池塘和网箱养殖的罗非鱼(格雷罗,瓦哈卡州和恰帕斯州)进行了分析。在这个热带地区,在2018年和2019年期间,罗非鱼养殖的水温通常处于生长尼罗河罗非鱼的最佳范围内,尽管一些农场记录了极端值。采样的大多数罗非鱼显然是健康的。没有Francisellasp。在任何样本中检测到,和葡萄球菌。随着时间的推移,这三个州是最普遍的细菌(从0%到64%)。气单胞菌的患病率低。被发现,从0%到4.3%,尽管未检测到鱼类病原体达克气单胞菌。2019年在恰帕斯州仅检测到链球菌,患病率较低(1.4%),而在墨西哥三个州,主要的罗非鱼病原体无乳链球菌的患病率很高(从0%到59%)。这是首次使用实时PCR在农村农场中检测到这些致病菌,对墨西哥的罗非鱼水产养殖构成了巨大的风险,以及这些病原体可能扩散到其他水产养殖地区。
    The present study investigates molecular-based PCR techniques to estimate the prevalence of fish pathogens in southwest Mexico where recurrent mortality in the tilapia cultures has been observed. Sample of internal organs and lesions of Nile tilapia were taken and analysed in 2018, 2019, 2020 and 2022 to detect bacterial pathogens using PCR. No samples were taken in 2021 due to the COVID-19 pandemic. The real-time PCR conditions were optimized to allow a qualitative reliable detection of the bacteria from fixed fish tissue. A total of 599 pond- and cage-cultured tilapia from the southwestern Mexican Pacific (Guerrero, Oaxaca and Chiapas states) were analysed. In this tropical region, during 2018 and 2019 water temperatures of the tilapia cultures were generally with the optimal range to grow Nile tilapia, although extreme values were recorded on some farms. Most of the tilapia sampled were apparently healthy. No Francisella sp. was detected in any sample, and Staphylococcus sp. was the most prevalent (from 0% to 64%) bacteria from the three states over time. Low prevalence of Aeromonas sp. was found, from 0% to 4.3%, although the fish pathogen Aeromonas dhakensis was not detected. Sterptococcus iniae was only detected in Chiapas in 2019 at a low prevalence (1.4%), while the major tilapia pathogen S. agalactiae was detected at a high prevalence (from 0% to 59%) in the three Mexican states. This is the first detection of these pathogenic bacteria in rural farms using real-time PCR and constitutes a great risk for tilapia aquaculture in Mexico, as well as a potential dispersion of these pathogens to other aquaculture areas.
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