reactome analysis

  • 文章类型: Journal Article
    二甲双胍(MET),一种口服抗糖尿病药物,据报道具有有希望的抗癌作用。我们假设在独特的纳米推拉剂中封装MET会增强其对HEP-2细胞的抗癌潜力。我们的结果表明,成功制造了Nano-MET痉挛药(d=232.10±0.20nm;PDI=0.25±0.11;zeta电位=(-)44.50±0.96;药物含量=99.90±0.11,包封率=88.01±2.50%)。MTT分析显示Nano-MET的细胞毒性比MET增强,计算的IC50为50μg/mL和>500μg/mL,分别。膜联蛋白V/PI凋亡实验显示,与MET相比,Nano-MET可将活细胞的百分比从95.49显着降低至93.70,并将停滞在G0/G1期的细胞百分比增加8.38%。此外,Nano-MET下调BCL-2,上调BAX蛋白水平1.57和1.88倍,分别。RT-qPCR显示,Nano-MET导致caspase-3,-8和-9水平显着增加13.75、4.15和2.23倍,细胞周期蛋白D1和mTOR水平降低100和43.47倍。分别。增殖标记Ki67免疫荧光染色显示,与对照相比,Nano-MET中的阳性细胞减少了3倍。利用联合途径富集分析(PEA)和Reactome分析显示某些途径的高度富集,包括核苷酸代谢,Nudix型水解酶,二氧化碳水合,止血,和先天免疫系统。总之,我们的结果证实了MET通过将其封装在纳米推拉剂中而增强了细胞毒性。我们还强调,使用PEA,MET可以调节与癌变有关的多种途径。
    Metformin (MET), an oral antidiabetic drug, was reported to possess promising anticancer effects. We hypothesized that MET encapsulation in unique nanospanlastics would enhance its anticancer potential against HEP-2 cells. Our results showed the successful fabrication of Nano-MET spanlastics (d = 232.10 ± 0.20 nm; PDI = 0.25 ± 0.11; zeta potential = (-) 44.50 ± 0.96; drug content = 99.90 ± 0.11 and entrapment efficiency = 88.01 ± 2.50%). MTT assay revealed the enhanced Nano-MET cytotoxicity over MET with a calculated IC50 of 50 μg/mL and > 500 μg/mL, respectively. Annexin V/PI apoptosis assay showed that Nano-MET significantly decreased the percentage of live cells from 95.49 to 93.70 compared to MET and increased the percentage of cells arrested in the G0/G1 phase by 8.38%. Moreover, Nano-MET downregulated BCL-2 and upregulated BAX protein levels by 1.57 and 1.88 folds, respectively. RT-qPCR revealed that Nano-MET caused a significant 13.75, 4.15, and 2.23-fold increase in caspase-3, -8, and - 9 levels as well as a 100 and 43.47-fold decrease in cyclin D1 and mTOR levels, respectively. The proliferation marker Ki67 immunofluorescent staining revealed a 3-fold decrease in positive cells in Nano-MET compared to the control. Utilizing the combined Pathway-Enrichment Analysis (PEA) and Reactome analysis indicated high enrichment of certain pathways including nucleotides metabolism, Nudix-type hydrolase enzymes, carbon dioxide hydration, hemostasis, and the innate immune system. In summary, our results confirm MET cytotoxicity enhancement by its encapsulation in nanospanlastics. We also highlight, using PEA, that MET can modulate multiple pathways implicated in carcinogenesis.
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  • 文章类型: Journal Article
    属于Nephthea属(Acyonaceae)的不同物种是生物活性次级代谢产物的丰富资源。文献表明,尚未在体内全面研究海洋次生代谢产物的胃保护作用。因此,本研究旨在检查和确定4α的抗溃疡活性,24-二甲基-5α-胆-8β,18-二羟基,22E-en-3β-ol(ST-1)分离自Nephthea物种的样品。这项体内研究得到了计算机分子对接和蛋白质-蛋白质相互作用技术的支持。口服ST-1可减少大鼠胃溃疡,同时增加胃粘膜。针对H+/K+-ATP酶转运蛋白的分子对接计算显示ST-1的结合亲和力更高,对接评分值为-9.9kcal/mol,pKi值为59.7nM,与雷尼替丁(一种商业质子泵抑制剂,给出的值为-6.2kcal/mol和27.9µM,分别)。联合PEA-反应组分析结果揭示了ST-1作为抗溃疡化合物通过显著调节控制PI3K信号通路的基因集的有希望的证据。随后在上皮形成和组织再生的信号传导中起着至关重要的作用,组织修复和组织重塑。这些结果表明ST-1可能对乙醇诱导的胃溃疡具有保护作用。
    Different species belonging to the genus Nephthea (Acyonaceae) are a rich resource for bioactive secondary metabolites. The literature reveals that the gastroprotective effects of marine secondary metabolites have not been comprehensively studied in vivo. Hence, the present investigation aimed to examine and determine the anti-ulcer activity of 4α,24-dimethyl-5α-cholest-8β,18-dihydroxy,22E-en-3β-ol (ST-1) isolated from samples of a Nephthea species. This in vivo study was supported by in silico molecular docking and protein-protein interaction techniques. Oral administration of ST-1 reduced rat stomach ulcers with a concurrent increase in gastric mucosa. Molecular docking calculations against the H+/K+-ATPase transporter showed a higher binding affinity of ST-1, with a docking score value of -9.9 kcal/mol and a pKi value of 59.7 nM, compared to ranitidine (a commercial proton pump inhibitor, which gave values of -6.2 kcal/mol and 27.9 µM, respectively). The combined PEA-reactome analysis results revealed promising evidence of ST-1 potency as an anti-ulcer compound through significant modulation of the gene set controlling the PI3K signaling pathway, which subsequently plays a crucial role in signaling regarding epithelialization and tissue regeneration, tissue repairing and tissue remodeling. These results indicate a probable protective role for ST-1 against ethanol-induced gastric ulcers.
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