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  • 文章类型: Journal Article
    真菌疾病通常与弹性肌的死亡率升高有关。目前,明显缺乏经过科学验证的治疗药物,这些药物在对该组动物给药时可确保有效性和安全性.唑类抗真菌药的经验处方,尤其是伏立康唑,已被认为是解决鲨鱼和射线中最常见的真菌病的潜在有效治疗方法。然而,目前还没有发表的药代动力学研究支持其在弹枝中的使用,也缺乏其在弹枝中的使用的科学依据。
    对于这项研究,伏立康唑静脉内(IV)和肌内(IM)给药,以4mg/kg的单剂量给六个成年起伏的溜冰鞋(Rajaundulata)。在每种给药途径之间留下8周的清除期。在每次给药之前和之后以10个预定间隔(给药后0.25、0.5、1、1.5、2、4、8、12、24和36小时)收集血样。使用经过验证的高效液相色谱法对血浆浓度进行定量,和药代动力学(PK)数据通过非房室方法进行分析。
    IV给药后0h的平均外推浓度(C0)为27.19±7.15μg/mL,IM给药后的平均峰值血浆浓度(Cmax)±SEM在达到最大浓度的平均时间(Tmax)为1.33±0.17h时得出2.98±0.28μg/mL。IV注射后,外推到无穷大的曲线下面积确定为58.14±2.79h·μg/ml,IM注射后为37.60±6.67h·μg/ml。IM给药的伏立康唑表现出64.67±11.47%的平均绝对生物利用度。
    这些发现为伏立康唑在波浪形溜冰鞋中通过肌内途径的可能应用提供了支持,并且与口服给药所需的剂量相比,使用较低剂量的方案提供了支持,强调在弹性膜中使用抗真菌药进行进一步药代动力学研究的重要性。
    UNASSIGNED: Fungal diseases are frequently associated with elevated mortality rates in elasmobranchs. Currently, there is a notable absence of scientifically validated therapeutic medications that can ensure both effectiveness and safety when administered to this group of animals. The empirical prescription of azole antifungal agents, particularly voriconazole, has been posited as a potentially efficacious treatment approach for addressing most common mycoses in sharks and rays. However, there are still no published pharmacokinetic studies supporting its use in elasmobranchs and there is a lack of scientific base for its utilization in elasmobranchs.
    UNASSIGNED: For this study, voriconazole was administered intravenously (IV) and intramuscularly (IM), at a single dose of 4 mg/kg to six adult undulate skates (Raja undulata). A washout period of 8 weeks was left between each route of administration. Blood samples were collected both before and at ten predetermined intervals after each dosing (0.25, 0.5, 1, 1.5, 2, 4, 8, 12, 24, and 36 h after drug administration). Plasma concentrations were quantified using a validated high-performance liquid chromatography method, and pharmacokinetic (PK) data was analyzed through non-compartmental methods.
    UNASSIGNED: The mean extrapolated concentration at 0 h (C0) after IV administration was 27.19 ± 7.15 μg/mL and the mean peak plasma concentrations (Cmax) ± SEM after IM administration resulted 2.98 ± 0.28 μg/mL at a mean time to maximum concentration (T max) of 1.33 ± 0.17 h. Terminal half-lives were calculated and resulted 11.18 ± 1.32 h for IV injections and 9.59 ± 1.38 h for IM injections. The area under the curve extrapolated to infinity was determined as 58.14 ± 2.79 h·μg/ml following IV injections and 37.60 ± 6.67 h·μg/ml following IM injections. The IM-administered voriconazole exhibited a mean absolute bioavailability of 64.67 ± 11.47%.
    UNASSIGNED: These discoveries provide backing for the possible application of voriconazole through the intramuscular route in undulate skates and support using lower dosage regimens compared to those required for oral administration, emphasizing the importance of conducting further pharmacokinetic studies with antifungals in elasmobranchs.
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  • 文章类型: Journal Article
    直到最近,商业渔业一直被认为是弹性分支种群下降的主要驱动因素。然而,这种信念已经开始转变,因为人们意识到娱乐性弹性分支渔获量在某些地区可能等于或超过商业渔获量。许多休闲垂钓鱼都参与了捕捞和释放垂钓活动。然而,高释放率不一定等同于高存活率。因此,为了帮助准确评估休闲垂钓对弹枝的潜在影响,我们试图总结和整合目前可用的与休闲垂钓相关的特定风险因素的信息,除了相关的死亡率,以及与已识别的风险因素相关的垂钓者行为信息。我们将主要的垂钓相关效应分为两组:损伤诱导效应;和生化破坏诱导效应;提供每个组的摘要,并概述了由此产生的主要致死和亚致死结果。这些结果包括立即和延迟释放后死亡率,行为恢复期(这反过来可能会增加捕食风险),慢性健康影响和捕获引起的分娩和流产。此外,我们详细介绍了一系列的钓鱼实践和设备,包括钩型,脱钩和脱钩(即空气暴露),以及种间和种内因素,包括有氧范围,呼吸模式,体型和物种特异性行为,这可能会影响伤害和/或死亡率,因此在评估垂钓相关影响时应予以考虑。然后,我们利用这些数据为垂钓者和决策者提供了一系列可行的建议,这将有助于减少娱乐性垂钓对这些神秘动物的种群水平影响。
    Until relatively recently commercial fisheries have been considered the main driving factor for elasmobranch population declines. However, this belief has begun to shift with the realization that recreational elasmobranch catches may equal or exceed commercial catches in some regions. Many recreational angling fisheries for elasmobranchs involve high participation in catch-and-release angling practices. However, high release rates may not necessarily equate to high survival rates. Therefore, to assist accurate assessment of the potential impact of recreational angling on elasmobranchs, we attempted to summarize and integrate currently available information on specific risk factors associated with recreational angling, alongside associated mortality rates, as well as information on angler behaviour as it relates to identified risk factors. We categorized the major angling-related effects into two groups: injury-induced effects; and biochemical disruption-induced effects; providing a summary of each group and outlining the main lethal and sub-lethal outcomes stemming from these. These outcomes include immediate and delayed post-release mortality, behavioural recovery periods (which may in-turn confer increased predation risks), chronic health impacts and capture-induced parturition and abortion. Additionally, we detailed a range of angling practices and equipment, including hook-type, hook removal and emersion (i.e. air exposure), as well as inter- and intra-specific factors, including aerobic scope, respiratory mode, body size and species-specific behaviours, which are likely to influence injury and/or mortality rates and should therefore be considered when assessing angling-related impacts. We then utilized these data to provide a range of actionable recommendations for both anglers and policymakers which would serve to reduce the population-level impact of recreational angling on these enigmatic animals.
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  • 文章类型: Journal Article
    弓形虫(Rhinaanclostomus)是最濒危的海洋脊椎动物之一,并且已经报道了严重下降和局部灭绝的证据。然而,由于物种的稀缺性和不可预测的运动,其生活史和生态缺乏科学关注。通过在潜水活动期间收集2015年至2023年的机会主义记录,这项研究首次描述了在Tadjoura湾(吉布提)中可预测的R.ancylostomus聚集的发生。这些数据提供了该地区该物种的关键记录,其存在与大约35m深度的沙质海床和珊瑚密切相关。根据潜水活动期间发现的机会性发现,RasEiro和RasKorali似乎是该物种目前已知的核心栖息地,可以用作繁殖或觅食地。总的来说,我们的数据显示,塔德休拉湾是全球重要的保护热点,因此,应该优先保护它。
    The bowmouth guitarfish (Rhina ancylostomus) is among the most endangered of marine vertebrates, and evidence of severe declines and localized extinctions has been reported. Yet its life history and ecology suffer from a lack of scientific attention due to the scarcity and unpredictable movements of the species. By collecting opportunistic records from 2015 to 2023 during diving activities, this study describes for the first time the occurrence of a predictable aggregation of R. ancylostomus in the Gulf of Tadjoura (Djibouti). These data provide a key record of this species in the area, whose presence is strongly associated with sandy seabeds and corals at approximately 35 m depth. Based on the opportunistic sightings of R. ancylostomus during diving activity, Ras Eiro and Ras Korali appear to be the currently known core habitats for this species and may serve as breeding or feeding grounds. Overall, our data show that the Gulf of Tadjoura is a globally important conservation hotspot, and therefore its protection should be prioritized.
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  • 文章类型: Journal Article
    直到几十年前,玩耍被认为是鸟类和哺乳动物特有的行为。尽管在其他脊椎动物中的游戏仍然是一个被忽视的研究课题,关于它的数据一直在慢慢积累,并在这里审查。现在我们知道像黄貂一样多样化的动物,丽鱼科鱼,监控蜥蜴,软壳海龟,鳄鱼可以出乎意料地顽皮。这些知识对更广泛的理论问题有影响,但是需要更多的研究关注来利用它的潜力。
    Until a few decades ago, play was considered a behavior unique to birds and mammals. Although play in other vertebrates is still a neglected research subject, data on it has been slowly accumulating, and are reviewed here. Now we know that animals as diverse as stingrays, cichlid fishes, monitor lizards, softshell turtles, and crocodiles can be unexpectedly playful. This knowledge has implications to broader theoretical problems, but much more research attention is needed to utilize its potential.
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  • 文章类型: Journal Article
    Elastmobranchs(鲨鱼和射线)是有魅力的软骨鱼,在公共水族馆很受欢迎。国际自然保护联盟(IUCN)将近200种鲨鱼和射线物种列为受威胁的物种。证明圈养育种和研究计划的重要性。有限的研究调查了圈养和自由生活环境中的弹性膜疾病,在现有的文献中,肿瘤很少报道,甚至更少的淋巴肿瘤的病例记录。本文概述了迄今为止尚未报道造血肿瘤的三种弹性分支物种中淋巴样肿瘤的首次报道。它总结了标志,历史和组织病理学发现在一个起伏的射线,Rajaundulata(Lacepede),普通的光滑猎犬,Mustelusmustelus(Linnaeus)和蝙蝠射线,加利福尼亚双歧杆菌(吉尔)。在广泛的组织中证实了病变,在2例中看到了淋巴白血病的证据。这项小规模的综述表明,淋巴瘤形成应被视为表现为嗜睡和厌食的弹性分支的鉴别诊断,并强调了免疫组织化学工作的挑战。
    Elasmobranchs (sharks and rays) are charismatic cartilaginous fish, popular in public aquaria. Almost 200 shark and ray species are listed as threatened by the International Union for Conservation of Nature (IUCN), demonstrating the importance of captive breeding and research programmes. Limited studies investigate diseases of elasmobranchs in captive and free-living environments, and among available literature neoplasia is rarely reported, with even fewer cases of lymphoid neoplasia documented. This article outlines the first reports of lymphoid neoplasia in three elasmobranch species in which haematopoietic neoplasms have not been reported to date. It summarizes signalment, history and histopathologic findings in an undulate ray, Raja undulata (Lacepede), a common smooth-hound, Mustelus mustelus (Linnaeus) and a bat ray, Myliobatis californica (Gill). Lesions were confirmed in a wide range of tissues and evidence of lymphoid leukaemia was seen in two cases. This small-scale review demonstrates that lymphoid neoplasia should be considered as a differential diagnosis in elasmobranchs presenting with lethargy and anorexia and highlights the challenges of immunohistochemical work up.
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  • 文章类型: Journal Article
    弹性分支产品的不可持续贸易,特别是鳍,导致了全球弹性分支种群的减少。设计和实施适合环境的解决方案以减轻不可持续的贸易,需要对市场进行彻底分析。在这里,我们评估孟加拉湾弹性分支鳍贸易的市场组成部分,孟加拉国,使用旨在分析野生动物市场的框架。使用混合方法方法,我们对市场进行了定性,以确定导致不可持续做法的组成部分。副渔获物的保留水平很高,导致了坚实市场的发展。由于价格高昂,鱼翅贸易很普遍,缺乏意识,演员遵守法规的能力有限,也没有限制捕捞死亡率的策略和激励措施。揭示了行为者之间不平衡的权力和金融结构,一些参与者从市场获得不平等的利益。低访问行为者采取保护措施的障碍(例如,渔民)的决策权或资源有限。我们还确定了执法面临的挑战,主要是由于报告有限以及识别物种和产品的问题。渔民注意到一些社会生态,技术,和执法问题(例如,治安而不是有意义的监控,在不促进合规的情况下采取惩罚性措施),这将需要足够的时间和资源来改变做法。缺乏遵守法规和加强执法的机会和信息导致了冲突,不遵守和不愿报告渔获量。该研究大大加强了对孟加拉国复杂的弹性分支产品市场的当前理解,同时突出了必须解决的关键知识差距,以告知和改进管理决策。根据调查结果,我们建议采取有针对性的行动,以应对当前的市场,以减轻弹性分支产品贸易,并朝着建立可持续和道德贸易的方向迈进。我们的工作既有区域意义,也有全球意义,鉴于孟加拉湾国家在全球弹性分支产品市场中的作用。
    The unsustainable trade in elasmobranch products, particularly fins, contributes to the decline of elasmobranch populations worldwide. Designing and implementing context-appropriate solutions to mitigate unsustainable trade requires a thorough analysis of markets. Here we assess the market component of the elasmobranch fin trade in the Bay of Bengal, Bangladesh, using a framework designed to analyse wildlife markets. Using a mixed-method approach, we characterised the market to identify the components contributing to unsustainable practices. By-catch retention levels were high leading to the development of a solid market. Trade on fins was prevalent due to a high price, lack of awareness, actors\' limited ability to adhere to regulations, and no strategies and incentives to limit fishing mortality. An imbalanced power and financial structure between actors were revealed, with some actors accessing unequal benefits from the market. Impediments for adopting conservation measures by low-access actors (e.g., fishers) with limited decision-making power or resources were evident. We also identified challenges to enforcement primarily due to limited reporting and issues identifying species and products. Fishers noted several socio-ecological, technical, and enforcement issues (e.g., policing instead of meaningful monitoring, punitive measures without facilitating compliance), that will require adequate time and resources to change practices. Lack of opportunities and information to adhere to regulations and increased enforcement has led to conflicts, non-compliance and unwillingness to report catches. The study has significantly strengthened the current understanding of Bangladesh\'s complex elasmobranch product market while highlighting critical knowledge gaps that must be addressed to inform and improve management decisions. Based on the findings, we recommend targeted actions to respond to the current market for mitigating elasmobranch product trade and moving towards establishing sustainable and ethical trade. Our work has both regional and global significance, given the role of the Bay of Bengal nations in the worldwide elasmobranch product market.
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  • 文章类型: Journal Article
    4.5亿年的进化给了软骨鱼(鲨鱼,射线和盟友)充足的时间来完美地适应各自的日常生活挑战,认知能力在这一过程中发挥了重要作用。鲨鱼和射线占据的生态位的多样性对应于大脑和行为的匹配多样性,但是我们只是在研究这一重要动物群体的认知方面触及了表面。在过去十年中,对少数物种进行了详细的认知评估,这些物种提供了足够的数据,可以安全地得出结论,鲨鱼和射线在认知上与大多数其他脊椎动物相当,包括哺乳动物和鸟类。实验室和野外的实验都有自己独特的挑战,主要是由于这些动物的处理和维护以及控制环境条件和消除混杂因素。尽管如此,在空间和社会认知领域取得了重大进展,歧视学习,记忆保留以及其他几个。大多数研究都集中在行为上,而认知信息处理中涉及的潜在神经底物在很大程度上仍然未知。我们对鲨鱼认知的理解对福利和保护管理有多种实际好处,但我们的知识存在明显的差距。像大多数海洋动物一样,鲨鱼和射线面临多重威胁。气候变化的影响,污染和由此产生的生态系统变化对鲨鱼和黄貂的认知能力的研究仍然很少,我们只能根据对硬骨鱼的研究推测可能产生的影响。最后,鲨鱼仍然因其作为无意识杀手的不良声誉而受到损害,并且成为商业捕鱼活动的主要目标。这个公共关系问题模糊了人们对鲨鱼情报的期望,严重阻碍了鲨鱼的保护。鉴于这里展示的令人着迷的结果,很明显,人们对鲨鱼和鲨鱼的普遍看法以及它们作为有知觉的地位,认知动物,迫切需要重新审视。
    450 million years of evolution have given chondrichthyans (sharks, rays and allies) ample time to adapt perfectly to their respective everyday life challenges and cognitive abilities have played an important part in that process. The diversity of niches that sharks and rays occupy corresponds to matching diversity in brains and behaviour, but we have only scratched the surface in terms of investigating cognition in this important group of animals. The handful of species that have been cognitively assessed in some detail over the last decade have provided enough data to safely conclude that sharks and rays are cognitively on par with most other vertebrates, including mammals and birds. Experiments in the lab as well as in the wild pose their own unique challenges, mainly due to the handling and maintenance of these animals as well as controlling environmental conditions and elimination of confounding factors. Nonetheless, significant advancements have been obtained in the fields of spatial and social cognition, discrimination learning, memory retention as well as several others. Most studies have focused on behaviour and the underlying neural substrates involved in cognitive information processing are still largely unknown. Our understanding of shark cognition has multiple practical benefits for welfare and conservation management but there are obvious gaps in our knowledge. Like most marine animals, sharks and rays face multiple threats. The effects of climate change, pollution and resulting ecosystem changes on the cognitive abilities of sharks and stingrays remain poorly investigated and we can only speculate what the likely impacts might be based on research on bony fishes. Lastly, sharks still suffer from their bad reputation as mindless killers and are heavily targeted by commercial fishing operations for their fins. This public relations issue clouds people\'s expectations of shark intelligence and is a serious impediment to their conservation. In the light of the fascinating results presented here, it seems obvious that the general perception of sharks and rays as well as their status as sentient, cognitive animals, needs to be urgently revisited.
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    文章类型: English Abstract
    Coxalgia is one of the most common painful complaints in orthopedic surgery. The management of a \"traumatic\" hip is relatively well codified, however atraumatic coxalgia is more difficult to diagnose and explore. The history and a well-conducted clinical examination are essential for the management of coxalgia. The diagnosis is already well oriented by a simple X-ray and the presence or absence of inflammatory signs on the blood test. This article aims to provide a guideline for the diagnostic approach to coxalgia.
    La coxalgie est une des plaintes douloureuses les plus fréquentes en chirurgie orthopédique. La prise en charge d’une hanche «traumatique» est relativement bien codifiée, par contre les coxalgies atraumatiques sont plus difficiles à diagnostiquer et explorer. L’anamnèse et un examen clinique bien conduit sont primordiaux pour la prise en charge de la coxalgie. Le diagnostic est déjà bien orienté par une simple radiographie et la présence ou non de signe inflammatoire à la prise de sang. Cet article vise à donner une ligne de conduite à la démarche diagnostique face à la coxalgie.
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  • 文章类型: Journal Article
    分类单元Elasmobranchii(鲨鱼和射线)包含一种由来已久的脊椎动物进化谱系,其诱人的物种集合占据了关键的水生栖息地。为了克服目前分子资源的限制,我们于2020年成立了Squalomix联盟,以促进全基因组的分子方法,专门针对鲨鱼和射线物种。使用弹性膜的各种瓶颈包括它们的难以捉摸和低繁殖力以及大型和高度重复的基因组。它们独特的体液组成也阻碍了建立进行其核型分析所需的常规细胞培养的方法。在Squalomix联盟中,这些障碍有望通过结合内部细胞学技术来解决,包括培养细胞的核型分析,用于Hi-C数据采集的染色质准备,和高保真长读测序。在该联盟中获得的资源和产品,包括基因组和转录组序列,由JBrowse2驱动的基因组浏览器,用于可视化序列比对,所选物种的基因表达谱的综合矩阵可通过https://github.com/Squalomix/info访问。
    The taxon Elasmobranchii (sharks and rays) contains one of the long-established evolutionary lineages of vertebrates with a tantalizing collection of species occupying critical aquatic habitats. To overcome the current limitation in molecular resources, we launched the Squalomix Consortium in 2020 to promote a genome-wide array of molecular approaches, specifically targeting shark and ray species. Among the various bottlenecks in working with elasmobranchs are their elusiveness and low fecundity as well as the large and highly repetitive genomes. Their peculiar body fluid composition has also hindered the establishment of methods to perform routine cell culturing required for their karyotyping. In the Squalomix consortium, these obstacles are expected to be solved through a combination of in-house cytological techniques including karyotyping of cultured cells, chromatin preparation for Hi-C data acquisition, and high fidelity long-read sequencing. The resources and products obtained in this consortium, including genome and transcriptome sequences, a genome browser powered by JBrowse2 to visualize sequence alignments, and comprehensive matrices of gene expression profiles for selected species are accessible through https://github.com/Squalomix/info.
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  • 文章类型: Journal Article
    第三代测序技术的发展给基因组学带来了重大变化和影响。与第二代测序方法相比,第三代技术产生约100倍的读段,以揭示新的基因组变异,这些变异完成了人类参考基因组中的长期缺口。然而,这些读取长度过大和错误率高,严重增加了数据量和对齐成本。传统的数据分析平台和序列比对方法不能有效地处理大规模长读数比对问题。迫切需要一种新颖的数据分析平台,该平台可以提供大规模序列的快速比对,以解决长读数比对的问题。高性能计算平台和高效、基于这些平台的可扩展算法具有影响序列分析方法的巨大潜力。本文提出了minimapR,一种基于minimap2的多级并行长读数对齐工具,这是一种流行的第三代读数对齐器。MinimapR是基于新的高性能分布式框架Ray开发的。Ray与Python环境完全集成,可以轻松安装pip。MinimapR可以利用多个计算节点的能力,显着加速对准速度而不牺牲灵敏度。miniapR工具在64个节点上进行了测试,并证明了速度提高了50倍,并行效率为78%。minimapR的源代码和用户手册可在https://github.com/Geehome/minimapR上免费获得。
    The development of third-generation sequencing technology has brought significant changes and influences on genomics. Compared to the second-generation sequencing methods, the third-generation technologies produce around 100 times longer reads to reveal new genomic variations that complete long-term gaps in the human reference genome. However, these reads\' excessive length and high error rate severely increase the amount of data and alignment cost. The traditional data analysis platform and serial sequence alignment method can not effectively deal with large-scale long read alignment. There is a critical need for a novel data analysis platform that can deliver fast alignment of large-scale sequences to solve the problem of long read alignment. High-performance computing platforms and efficient, scalable algorithms based on these platforms have significant potential to impact sequence analysis approaches. This paper presented minimapR, a multi-level parallel long-read alignment tool based on minimap2, a popular third-generation read aligner. MinimapR is developed based on the new high-performance distributed framework Ray. Ray fully integrates with the Python environment and can be easily installed with pip. MinimapR can utilize the power of multiple computing nodes, significantly accelerating alignment speeds without sacrificing sensitivity. The minimapR tool was tested on 64 nodes and demonstrated a 50 fold increase in speed with 78 % parallel efficiency. The source code and user manual of minimapR are freely available at https://github.com/Geehome/minimapR.
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