rare genotype

  • 文章类型: Case Reports
    未经证实:Verheij综合征(VRJS)是一种罕见的染色体8q24.3微缺失综合征,其特征是严重的生长迟缓,小头畸形,椎骨异常,关节松弛/脱位,精神运动性迟钝,心脏和肾脏缺陷,和畸形的面部特征。已经发现PUF60(聚-U结合剪接因子60kDa)的致病变体引起VRJS。在这里,我们介绍了一名患有Verheij综合征的土耳其患者,他具有典型的面部畸形特征以及肾脏和心脏异常,脊柱侧弯,系绳,轻度智力残疾。
    未经证实:这是一例11岁女性儿童出现Verheij综合征的病例报告。从患者和家属收集血样。我们使用全外显子组测序来鉴定潜在的基因突变。我们还使用3维蛋白质结构分析来鉴定突变的影响。
    UNASSIGNED:通过全外显子测序鉴定了PUF60基因的从头框内变体(c.449_457delCAAAGGGGG;p.Ala150_Phe152del)。根据2015年ACMG指南,该突变被归类为致病性突变,并已在clinvar数据库中报告。计算机预测软件工具的结果预测该突变是致病性的。蛋白质结构分析表明,受框内缺失形式影响的三个残基可能导致PUF60蛋白的稳定性和功能受损。
    未经批准:迄今为止,在医学文献中已经报道了25例具有PUF60突变的患者。在这篇文章中,我们报告了1例VRJS患者,发现脊髓栓系综合征和肾脏异常.据我们所知,这是土耳其首例确诊为Verheij综合征的患者.
    Verheij syndrome (VRJS) is a rare microdeletion syndrome of chromosome 8q24.3 that is characterized by severe growth retardation, microcephaly, vertebral anomalies, joint laxity/dislocation, psychomotor retardation, cardiac and renal defects, and dysmorphic facial features. Pathogenic variants of PUF60 (Poly-U Binding Splicing Factor 60 kDa) have been found to cause VRJS. Here we present a Turkish patient with Verheij syndrome who has typical facial dysmorphic features and renal and cardiac abnormalities, scoliosis, tethered cord, and mild intellectual disability.
    This is a case report of a 11-year-old female child who presented with Verheij syndrome. Blood samples were collected from the patient and the family. We performed whole exome sequencing was used to identify potential genetic mutations. We also used 3-dimensional protein structure analysis to identify the effect of the mutation.
    A de-novo in-frame variant (c.449_457delCAAAGGGGG; p.Ala150_Phe152del) of the PUF60 gene was identified by whole exome sequencing. According to ACMG guidelines in 2015, the mutation is classified as pathogenic and it has been reported in the clinvar database. Results of in-silico prediction software tools predicted the mutation was pathogenic. Protein structure analysis showed that the three residues affected by the in-frame deletion form could lead to impaired stability and function of the PUF60 protein.
    To date, 25 patients have been reported with PUF60 mutations in the medical literature. In this article, we report a patient with VRJS who had the unusual findings of tethered cord syndrome and renal abnormalities. As far as we know, this is the first patient from Turkey who has been diagnosed with Verheij syndrome.
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  • 文章类型: Case Reports
    Congenital adrenal hyperplasia (CAH) is an autosomal recessive disorder of adrenal steroidogenesis with a broad spectrum of clinical presentations, ranging from the severe classical salt-wasting (SW) and simple-virilizing (SV) form, to the mild nonclassical form. A large variety of CYP21A2 genotypes in correlation with phenotype have been described.
    DNA samples from a 14-day-old male newborn with clinical and laboratory signs of SW CAH and family members were subjected for molecular analysis of the nine most common point CYP21A2 mutations by ACRS/PCR method. Direct DNA sequencing of the whole CYP21A2 gene was performed to detect the second mutant allele in the patient. The in silico predicting analysis and the crystal structure analysis of the mutated CYP21A2 protein have been performed.
    Molecular analysis confirmed that the patient was compound heterozygote carrying p.Q318X mutation inherited from the mother and a novel c.1271_1279delGTGCCCGCG (p.G424_R426del) variant in exon 10 inherited from the father. The in silico predicting software tools classified the novel mutation as pathogenic. Crystal structure analysis showed that the three residues affected by the novel in-frame deletion form several hydrogen bonds that could lead to impaired stability and function of the CYP21A2 protein. These findings were concordant with the patient\'s phenotype. The need of several molecular methods to elucidate the genotype in this patient has also been discussed.
    A novel 9 bp deletion in CYP21A2 gene with predicted pathogenic effect on the enzyme activity was detected in neonatal patient causing severe SW CAH.
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  • 文章类型: Journal Article
    Hb H diseases with the clinical features of thalassemia are found in many parts of the world, including Southeast Asia and southern China. There are limitations in molecular data from the population of Thailand, which includes multiple ethnic groups. Here, we characterized the molecular basis of the disease among a large cohort from this region. A total of 479 unrelated Thai patients with Hb H disease were studied. Mutations of the α-globin gene were characterized by conventional gap-PCR and rare genotypes were identified by MLPA analysis and direct DNA sequencing. The molecular characterization showed five common Hb H genotypes (472/479; 98.54%), including three deletional types (-SEA/-α3.7; n = 312), (-SEA/-α4.2; n = 26), (-THAI/-α3.7; n = 1) and two non-deletional types (-SEA/αCSα; n = 131), (-SEA/αPakséα; n = 2). Herein, we firstly report a rare genotype of Hb H disease with (-SA/-α3.7; n = 1) that has not been documented in Thailand, and rare genotypes related to (-SEA/-α16.6; n = 1), and (-SEA/αQSα; n = 3) as well. The remaining two cases could not be characterized. The hematological parameters demonstrated that the clinical phenotype of non-deletional Hb H diseases is more severe than the deletional type of α+-thalassemia. The molecular spectrum of α-thalassemia is useful for prevention and thalassemia control and genetic counseling for couples at risk in this region.
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