rDNA sites

  • 文章类型: Journal Article
    最近,关于蚂蚁染色体中核糖体基因进化模式的假设一直在讨论中。这些假设之一提出了染色体位置和rDNA位点数量之间的关系,表明末端位置通过减数分裂期间的异位重组促进rDNA簇的分散,而染色体内位置将它们限制为单个染色体对。另一个假设表明,由于染色体分裂,rDNA位点的增殖可能与膜翅目中染色体数量的增加有关。在这项研究中,我们在15个新的蚂蚁物种中对rDNA位点进行了物理映射,并回顾了自Teixeira等人修订以来可用的rDNA数据。(2021a)。我们的目标是调查新数据是否证实了染色体位置和rDNA位点数量之间的关系,以及染色体数目的增加是否显著影响蚂蚁核型rDNA簇的分散。将我们的新数据与2021年后发布的有关蚂蚁细胞遗传学的所有信息相结合,组装了40个新物种和9个新属。大多数物种在单个染色体对上表现出染色体内rDNA位点,而三个物种在多个染色体对的末端区域显示了这些基因。一方面,假设rDNA簇的染色体位置可能促进rDNA位点在蚂蚁基因组中的分散,如前所述,加强了,但是,另一方面,染色体裂变是核糖体基因在蚂蚁体内分散的主要机制的假说可能会被驳斥。此外,在某些属中,rDNA位点的位置在所研究的物种中保持相似,而在其他人中,这些基因的分布显示出物种之间的显著差异,表明染色体进化更加动态.
    Recently, hypotheses regarding the evolutionary patterns of ribosomal genes in ant chromosomes have been under discussion. One of these hypotheses proposes a relationship between chromosomal location and the number of rDNA sites, suggesting that terminal locations facilitate the dispersion of rDNA clusters through ectopic recombination during meiosis, while intrachromosomal locations restrict them to a single chromosome pair. Another hypothesis suggests that the multiplication of rDNA sites could be associated with an increase in the chromosome number in Hymenoptera due to chromosomal fissions. In this study, we physically mapped rDNA sites in 15 new ant species and also reviewed data on rDNA available since the revision by Teixeira et al. (2021a). Our objectives were to investigate whether the new data confirm the relationship between chromosomal location and the number of rDNA sites, and whether the increase in the chromosome number is significant in the dispersion of rDNA clusters in ant karyotypes. Combining our new data with all information on ant cytogenetics published after 2021, 40 new species and nine new genera were assembled. Most species exhibited intrachromosomal rDNA sites on a single chromosome pair, while three species showed these genes in terminal regions of multiple chromosome pairs. On one hand, the hypothesis that the chromosomal location of rDNA clusters may facilitate the dispersion of rDNA sites in the ant genome, as previously discussed, was strengthened, but, on the other hand, the hypothesis of chromosomal fission as the main mechanism for dispersion of ribosomal genes in ants is likely to be refuted. Furthermore, in certain genera, the location of rDNA sites remained similar among the species studied, whereas in others, the distribution of these genes showed significant variation between species, suggesting a more dynamic chromosomal evolution.
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  • 文章类型: Journal Article
    Vigna属(Leguminosae)包括约150个物种,分为五个亚属。本研究旨在提高对Vigna核型多样性和进化的认识,通过不同的细胞遗传学和DNA含量方法使用新的和以前发表的数据。在维格纳亚属中,我们观察到rDNA模式的随机分布。35SrDNA的位置不同,从终端到近端,在数量上,范围从一(V.针叶,五、subg。Ceratotropis)到七对(V.unguiculata亚种。unguiculata,五、subg。维格纳)。另一方面,5SrDNA的数量是保守的(一对或两对),除了V.radiata(V.subg.Ceratotropis),有三双。基因组大小在属内相对保守,V.oblongifolia和V.unguiculata亚种的1C=0.43至0.70pg。unguiculata,分别,都属于V.subg。维格纳.然而,我们观察到DNA含量与35SrDNA位点的数量之间呈正相关。此外,来自染色体特异性BAC-FISH的数据表明,祖先的35SrDNA基因座在Vigna内的6号染色体上保守。考虑到rDNA位点数量和位置的快速多样化,这种保护是令人惊讶的,并表明,更多的网站可能已经从这个祖先的所在地扩散。
    The genus Vigna (Leguminosae) comprises about 150 species grouped into five subgenera. The present study aimed to improve the understanding of karyotype diversity and evolution in Vigna, using new and previously published data through different cytogenetic and DNA content approaches. In the Vigna subgenera, we observed a random distribution of rDNA patterns. The 35S rDNA varied in position, from terminal to proximal, and in number, ranging from one (V. aconitifolia, V. subg. Ceratotropis) to seven pairs (V. unguiculata subsp. unguiculata, V. subg. Vigna). On the other hand, the number of 5S rDNA was conserved (one or two pairs), except for V. radiata (V. subg. Ceratotropis), which had three pairs. Genome size was relatively conserved within the genus, ranging from 1C = 0.43 to 0.70 pg in V. oblongifolia and V. unguiculata subsp. unguiculata, respectively, both belonging to V. subg. Vigna. However, we observed a positive correlation between DNA content and the number of 35S rDNA sites. In addition, data from chromosome-specific BAC-FISH suggest that the ancestral 35S rDNA locus is conserved on chromosome 6 within Vigna. Considering the rapid diversification in the number and position of rDNA sites, such conservation is surprising and suggests that additional sites may have spread out from this ancestral locus.
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  • 文章类型: Journal Article
    Alstroemeria (Alstroemeriaceae) displays a conserved and highly asymmetric karyotype, where most rDNA sites can be properly recognized by the size and morphology of the chromosomes. We analyzed the intraspecific variation of rDNA sites in A. longistaminea and compared with their distribution in other species (A. caryophyllaea and A. piauhyensis) and a representative of a sister genus, Bomarea edulis. All three species of Alstroemeria presented 2n = 16, and one to six B chromosomes were found in some individuals of A. longistaminea. There was a set of 12 conserved rDNA sites (four 5S and eight 35S) and up to 11 variable sites. B chromosomes were almost entirely covered by 35S signals, coupled with tiny 5S sites. Noteworthy, most rDNA sites found in A. caryophyllaea and A. piauhyensis were localized in chromosome positions similar to those in A. longistaminea, suggesting the existence of conserved hotspots for rDNA accumulation. Some of these hotspots were absent in Chilean Alstromeria as well in B. edulis. We propose that insertions of rDNA sequences on chromosomes do not occur randomly but rather on preferential sites or hotspots for insertions. The maintenance of these arrays, however, may be favored/constrained by different factors, resulting in stable or polymorphic sites.
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  • 文章类型: Journal Article
    Allioideae(例如,细香葱,Garlics,洋葱)包括三个主要的温带部落:Allieae(来自北半球的800种),Gilliesiae(南美80种),和Tulbaghieae(26种南部非洲物种)。我们根据ITS重建了Allioideae的系统发育(190种,来自Agapanthoideae和Amaryllidoideae的257种),matK,ndhF,和rbcL使用新生成的智利GilliesiaeGethyum属的细胞分子数据研究其历史生物地理学和核型进化,Miersia,Solaria,还有Speea.Allioideae的皇冠群多样化〜62Mya,支持亚科和代际的冈瓦尼族起源,这是部落洲际分离的原因。我们的结果支持印度构造板块将Allieae带到北半球的假设(“印度外”假设)。北半球(〜30Mya)的定殖与与稳定的x=8,多倍体的增加以及欧洲和北美的地理扩张有关的葱属中更高的多样化率相关。Tulbaghieae表现为x=6,但数值稳定(2n=12)。相比之下,Gilliesiae部落(x=6)的基因组大小差异很大(与罗伯逊易位有关),rDNA位点分布和染色体数目。我们的数据表明,Allioideae部落的进化史与核型进化的不同趋势有关。
    Allioideae (e.g., chives, garlics, onions) comprises three mainly temperate tribes: Allieae (800 species from the northern hemisphere), Gilliesieae (80 South American species), and Tulbaghieae (26 Southern African species). We reconstructed the phylogeny of Allioideae (190 species plus 257 species from Agapanthoideae and Amaryllidoideae) based on ITS, matK, ndhF, and rbcL to investigate its historical biogeography and karyotype evolution using newly generated cytomolecular data for Chilean Gilliesieae genera Gethyum, Miersia, Solaria, and Speea. The crown group of Allioideae diversified ∼62 Mya supporting a Gondwanic origin for the subfamily and vicariance as the cause of the intercontinental disjunction of the tribes. Our results support the hypothesis of the Indian tectonic plate carrying Allieae to northern hemisphere (\'out-of-India\' hypothesis). The colonization of the northern hemisphere (∼30 Mya) is correlated with a higher diversification rate in Allium associated to stable x = 8, increase of polyploidy and the geographic expansion in Europe and North America. Tulbaghieae presented x = 6, but with numerical stability (2n = 12). In contrast, the tribe Gilliesieae (x = 6) varied considerably in genome size (associated with Robertsonian translocations), rDNA sites distribution and chromosome number. Our data indicate that evolutionary history of Allioideae tribes is linked to distinct trends of karyotype evolution.
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  • 文章类型: Journal Article
    菊苣(CichoriumendiviaL.)和菊苣(C.intybusL.)两者都有2n=18,但直到现在,还没有详细的细胞形态特征。本工作使用带有rDNA探针的FISH以及CMA和DAPI的荧光染料染色评估了每个物种的五个种质。荧光染料染色后,两种物种均呈现不同的条带模式:菊苣在第1、2和3对的短臂中具有近端CMA()/DAPI(-)带,而菊苣在1号和3号染色体中具有近端CMA阳性带,并且在8号染色体的短臂中具有间质。在俯冲加入中,FISH程序揭示了5S和45SrDNA位点的保守位置和数量(两对和三对,分别),与CMA阳性带相关。尽管如此,在菊苣种质中检测到rDNA位点的数量和分布与最常见的核型有关的多态性(两对45S和一对5SrDNA)。开发的核学标记允许两个物种之间的核型分化,发现rDNA位点的数量和位置的特殊性,这表明染色体重排,如菊苣品种的易位。观察到的种间和种内多态性强调了核形态评估的潜力,帮助我们理解这个群体的关系和进化。
    Endive (Cichorium endivia L.) and chicory (C. intybus L.) both have 2n = 18, but until now, there has been no detailed karyomorphological characterization. The present work evaluated five accessions of each species using FISH with rDNA probes and fluorochrome staining with CMA and DAPI. Both species presented distinct banding patterns after fluorochrome staining: while endive had proximal CMA(++)/DAPI(-) bands in the short arms of pairs 1, 2 and 3, chicory had proximal CMA-positive bands in chromosomes 1 and 3 and interstitial in the short arm of chromosome 8. Among endive accessions, FISH procedures revealed conserved position and number of 5S and 45S rDNA sites (two and three pairs, respectively), associated with the CMA-positive bands. Notwithstanding, polymorphisms were detected within chicory accessions regarding the number and the distribution of rDNA sites in relation to the most frequent karyotype (two pairs with 45S and one with 5S rDNA). The karyological markers developed allowed karyotypic differentiation between both species, uncovering peculiarities in the number and position of rDNA sites, which suggest chromosome rearrangements, such as translocations in chicory cultivars. The interspecific and intraspecific polymorphisms observed emphasize the potential of karyomorphological evaluations, helping our understanding of the relationships and evolution of the group.
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  • 文章类型: Journal Article
    对可可(cacao)和T.grandiflorum(cupuaçu)的有丝分裂染色体进行了比较分析,目的是确定该属的两个最重要物种之间的细胞学差异。两个物种都有对称核型,2n=20个中心染色体的大小范围为2.00至1.19μm(可可)和2.21至1.15μm(cupuaçu)。两种物种的相间核均为网状类型,显示多达20个色心,在可可豆中比在库帕苏中更有规律地成形。这两个物种的前期染色体在近端区域更加浓缩,有时包括整个短臂。两种物种都仅显示一对末端异色带,色霉素A阳性染色(3),与单个45SrDNA位点共定位。每个核型在另一个染色体对的近端区域显示一个5SrDNA位点。在C带,然后进行Giemsa或DAPI染色后,在可可的所有20条染色体的着丝粒/着丝粒区域上也观察到异色带,而在库帕苏,他们从未被发现。这些数据表明,这两个物种的染色体在很大程度上是保守的,并且它们的着丝粒染色质是唯一的在胎盘上分化的区域。
    A comparative analysis of mitotic chromosomes of Theobroma cacao (cacao) and T. grandiflorum (cupuaçu) was performed aiming to identify cytological differences between the two most important species of this genus. Both species have symmetric karyotypes, with 2n = 20 metacentric chromosomes ranging in size from 2.00 to 1.19 μm (cacao) and from 2.21 to 1.15 μm (cupuaçu). The interphase nuclei of both species were of the arreticulate type, displaying up to 20 chromocentres, which were more regularly shaped in cacao than in cupuaçu. Prophase chromosomes of both species were more condensed in the proximal region, sometimes including the whole short arm. Both species exhibited only one pair of terminal heterochromatic bands, positively stained with chromomycin A (3) , which co-localized with the single 45S rDNA site. Each karyotype displayed a single 5S rDNA site in the proximal region of another chromosome pair. Heterochromatic bands were also observed on the centromeric/pericentromeric regions of all 20 chromosomes of cacao after C-banding followed by Giemsa or DAPI staining, whereas in cupuaçu they were never detected. These data suggest that the chromosomes of both species have been largely conserved and their pericentromeric chromatin is the only citologically differentiated region.
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  • 文章类型: Journal Article
    Most species of the genus Tripogandra (Commelinaceae) are taxonomically poorly circumscribed, in spite of having a relatively stable basic number x = 8. Aiming to estimate the cytological variation among Tripogandra species carrying this base number, several structural karyotypic characters were investigated in the diploid T. glandulosa, the hexaploid T. serrulata, and the octoploid T. diuretica. A careful evaluation of chromosome size and morphology did not reveal clear chromosome homeologies among karyotypes. The mean chromosome size was strongly reduced in the octoploid species, but not in the hexaploid species. They also differed largely in the CMA(+) banding pattern and in the number of 5S and 45S rDNA sites per monoploid chromosome complement. All three species showed proximal DAPI (+) heterochromatin, although in T. serrulata this kind of heterochromatin was only visible after FISH. Further, the meiosis in T. serrulata was highly irregular, suggesting that this species has a hybrid origin. The data indicate that, in spite of the conservation of the base number, these species are karyologically quite different from each other.
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