physiologically based pharmacokinetic (PBPK) modeling

  • 文章类型: Journal Article
    啮齿动物吸入研究表明苯乙烯是小鼠肺特异性致癌物。作用模式(MOA)分析表明,由于在啮齿动物和人类中检测到的共有氧化代谢产物,因此不能排除与人类弱定量相关的肺肿瘤。然而,苯乙烯在体内给药后也没有遗传毒性。本综述的目的是通过保守地假设小鼠肺肿瘤与人类相关但由非基因毒性MOA操作来表征职业和普通人群癌症风险。各个职业和普通人群暴露的吸入癌值参考浓度(RfCcar-ocup和RfCcar-genpop)来自小鼠吸入肿瘤剂量反应数据的初始基准剂量(BMD)建模。肺肿瘤的总体最低BMDL10为4.7ppm,通过基于生理的药代动力学(PBPK)建模进一步调整持续时间和剂量,以得出6.2ppm和0.8ppm的RfCcar-occup/genpop值,分别。除开模纤维增强复合材料工人不使用个人防护装备(PPE)外,RfCcar-ocup/genpop值大于典型的职业和普通人群人类暴露,因此表明苯乙烯暴露代表了人类肺癌风险的低潜力。与这个结论一致,对苯乙烯职业流行病学的审查不支持苯乙烯暴露与肺癌发生之间的关联的结论。并进一步支持保守推导的RfCcar发生具有肺癌保护作用的结论。
    Rodent inhalation studies indicate styrene is a mouse lung-specific carcinogen. Mode-of-action (MOA) analyses indicate that the lung tumors cannot be excluded as weakly quantitatively relevant to humans due to shared oxidative metabolites detected in rodents and humans. However, styrene also is not genotoxic following in vivo dosing. The objective of this review was to characterize occupational and general population cancer risks by conservatively assuming mouse lung tumors were relevant to humans but operating by a non-genotoxic MOA. Inhalation cancer values reference concentrations for respective occupational and general population exposures (RfCcar-occup and RfCcar-genpop) were derived from initial benchmark dose (BMD) modeling of mouse inhalation tumor dose-response data. An overall lowest BMDL10 of 4.7 ppm was modeled for lung tumors, which was further duration- and dose-adjusted by physiologically based pharmacokinetic (PBPK) modeling to derive RfCcar-occup/genpop values of 6.2 ppm and 0.8 ppm, respectively. With the exception of open-mold fiber reinforced composite workers not using personal protective equipment (PPE), the RfCcar-occup/genpop values are greater than typical occupational and general population human exposures, thus indicating styrene exposures represent a low potential for human lung cancer risk. Consistent with this conclusion, a review of styrene occupational epidemiology did not support a conclusion of an association between styrene exposure and lung cancer occurrence, and further supports a conclusion that the conservatively derived RfCcar-occup is lung cancer protective.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    卡马西平(CBZ)通常用于治疗癫痫,并经常用于多种药物治疗。然而,引起人们对其诱导其他药物代谢的能力的担忧,包括自己,可能导致共同用药的治疗不足。此外,CBZ表现出非线性药代动力学(PK),但是根本原因尚未得到充分研究。本研究旨在探讨CBZ非线性PK背后的机制及其对CYP3A4和CYP2C9酶的诱导潜力。为了实现这一点,我们在GastroPlus®中开发并验证了CBZ及其活性代谢产物卡马西平-10,11-环氧化物的生理药代动力学(PBPK)母体代谢模型。该模型用于CYP3A4和CYP2C9受害者药物的药物-药物相互作用(DDI)预测,并进一步探索CBZ非线性PK背后的潜在机制。该模型准确地概括了CBZ血浆PK。通过对奎尼丁的CBZDDIs的预测证明了良好的DDI性能,dolutegravir,苯妥英,和甲苯磺丁脲;然而,咪达唑仑,预测/观察到的DDIAUClast比率为0.49(略微超出2倍范围).CBZ的非线性PK可以归因于其由自感应引起的非线性代谢,以及由于溶解度差导致的非线性吸收。在进一步的应用中,当CBZ充当CYP3A4和CYP2C9诱导剂时,该模型可以帮助理解DDI潜力。
    Carbamazepine (CBZ) is commonly prescribed for epilepsy and frequently used in polypharmacy. However, concerns arise regarding its ability to induce the metabolism of other drugs, including itself, potentially leading to the undertreatment of co-administered drugs. Additionally, CBZ exhibits nonlinear pharmacokinetics (PK), but the root causes have not been fully studied. This study aims to investigate the mechanisms behind CBZ\'s nonlinear PK and its induction potential on CYP3A4 and CYP2C9 enzymes. To achieve this, we developed and validated a physiologically based pharmacokinetic (PBPK) parent-metabolite model of CBZ and its active metabolite Carbamazepine-10,11-epoxide in GastroPlus®. The model was utilized for Drug-Drug Interaction (DDI) prediction with CYP3A4 and CYP2C9 victim drugs and to further explore the underlying mechanisms behind CBZ\'s nonlinear PK. The model accurately recapitulated CBZ plasma PK. Good DDI performance was demonstrated by the prediction of CBZ DDIs with quinidine, dolutegravir, phenytoin, and tolbutamide; however, with midazolam, the predicted/observed DDI AUClast ratio was 0.49 (slightly outside of the two-fold range). CBZ\'s nonlinear PK can be attributed to its nonlinear metabolism caused by autoinduction, as well as nonlinear absorption due to poor solubility. In further applications, the model can help understand DDI potential when CBZ serves as a CYP3A4 and CYP2C9 inducer.
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  • 文章类型: Introductory Journal Article
    本特刊包含有关各种新方法方法(NAM)在毒理学和风险评估领域的应用的文章。这些NAM包括体外高通量筛选,定量结构-活性关系(QSAR)建模,基于生理的药代动力学(PBPK)建模,网络毒理学分析,分子对接模拟,组学,机器学习,深度学习,和“模板和锚”多尺度计算建模。这些体外和计算机方法相互补充,可以整合在一起以支持毒理学的不同应用。包括食品安全评估,饮食暴露评估,化学毒性效力筛选和排名,化学毒性预测,化学毒物动力学模拟,并研究潜在的毒性机制,正如在本期特刊的精选文章中进一步介绍的那样。
    This Special Issue contains articles on applications of various new approach methodologies (NAMs) in the field of toxicology and risk assessment. These NAMs include in vitro high-throughput screening, quantitative structure-activity relationship (QSAR) modeling, physiologically based pharmacokinetic (PBPK) modeling, network toxicology analysis, molecular docking simulation, omics, machine learning, deep learning, and \"template-and-anchor\" multiscale computational modeling. These in vitro and in silico approaches complement each other and can be integrated together to support different applications of toxicology, including food safety assessment, dietary exposure assessment, chemical toxicity potency screening and ranking, chemical toxicity prediction, chemical toxicokinetic simulation, and to investigate the potential mechanisms of toxicities, as introduced further in selected articles in this Special Issue.
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  • 文章类型: Journal Article
    基于生理的两孔药代动力学(PBPK)模型已证明其在描述不同大小蛋白质的药代动力学(PK)方面的潜力。然而,所有现有的双孔模型都缺乏用于验证或种间外推的不同蛋白质。为了填补空白,在这里,我们已经开发和优化了一个翻译的两孔PBPK模型,可以表征不同大小的蛋白质在小鼠的血浆和组织分布,老鼠,猴子,和人类。用于模型开发的数据集包括超过15种类型的蛋白质:IgG(150kDa),F(ab)2(100kDa),微型车身(80kDa),含Fc蛋白(205、200、110、105、92、84、81、65或60kDa),白蛋白缀合物(85.7kDa),白蛋白(67kDa),Fab(50kDa),双抗体(50kDa),scFv(27kDa),dAb2(23.5kDa),具有白蛋白结合域(26、23.5、22、16、14或13kDa)的蛋白质,纳米抗体(13kDa),和其他蛋白质(110、65或60kDa)。PBPK模型包含:(i)通过扩散和过滤通过大小孔的分子量(MW)依赖性外渗,(ii)MW依赖性肾滤过,(iii)内体FcRn介导的保护免受IgG和白蛋白相关形式的分解代谢,和(iv)竞争来自内源性IgG和白蛋白的FcRn结合。最终的模型可以很好地表征大多数这些蛋白质的PK,曲线下的面积预测在两倍的误差内。该模型还提供了对肾脏过滤和溶酶体降解对蛋白质完全消除的贡献的见解,以及细胞旁对流/扩散和胞吞对外渗的贡献。这里介绍的PBPK模型代表了一种交叉模式,可用于开发新生物制品的跨物种平台。
    Two-pore physiologically based pharmacokinetic (PBPK) modeling has demonstrated its potential in describing the pharmacokinetics (PK) of different-size proteins. However, all existing two-pore models lack either diverse proteins for validation or interspecies extrapolation. To fill the gap, here we have developed and optimized a translational two-pore PBPK model that can characterize plasma and tissue disposition of different-size proteins in mice, rats, monkeys, and humans. Datasets used for model development include more than 15 types of proteins: IgG (150 kDa), F(ab)2 (100 kDa), minibody (80 kDa), Fc-containing proteins (205, 200, 110, 105, 92, 84, 81, 65, or 60 kDa), albumin conjugate (85.7 kDa), albumin (67 kDa), Fab (50 kDa), diabody (50 kDa), scFv (27 kDa), dAb2 (23.5 kDa), proteins with an albumin-binding domain (26, 23.5, 22, 16, 14, or 13 kDa), nanobody (13 kDa), and other proteins (110, 65, or 60 kDa). The PBPK model incorporates: (i) molecular weight (MW)-dependent extravasation through large and small pores via diffusion and filtration, (ii) MW-dependent renal filtration, (iii) endosomal FcRn-mediated protection from catabolism for IgG and albumin-related modalities, and (iv) competition for FcRn binding from endogenous IgG and albumin. The finalized model can well characterize PK of most of these proteins, with area under the curve predicted within two-fold error. The model also provides insights into contribution of renal filtration and lysosomal degradation towards total elimination of proteins, and contribution of paracellular convection/diffusion and transcytosis towards extravasation. The PBPK model presented here represents a cross-modality, cross-species platform that can be used for development of novel biologics.
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  • 文章类型: Journal Article
    这篇文献综述的目的是全面总结孕妇和胎盘中II期药物代谢酶和药物转运蛋白表达的变化。使用PubMed®,我们进行了系统检索,以确定与妊娠期药物代谢和转运相关的文献.在2023年5月26日至2023年7月10日期间,使用预先指定的术语搜索了PubMed。评估了142份手稿的最终数据集,以获取有关孕龄和激素调节对孕妇和胎盘中II期酶(n=16)和药物转运蛋白(n=38)表达的影响的证据。这篇全面的综述揭示了目前对II期酶和药物转运蛋白定位的知识存在的差距,表达式,和怀孕期间的调节,这强调了进一步研究的必要性。此外,本综述收集的有关II期药物代谢酶和药物转运体变化的信息将有助于优化基于妊娠生理的药代动力学(PBPK)模型,为妊娠人群的剂量选择提供信息.
    The purpose of this literature review is to comprehensively summarize changes in the expression of phase II drug-metabolizing enzymes and drug transporters in both the pregnant woman and the placenta. Using PubMed®, a systematic search was conducted to identify literature relevant to drug metabolism and transport in pregnancy. PubMed was searched with pre-specified terms during the period of 26 May 2023 to 10 July 2023. The final dataset of 142 manuscripts was evaluated for evidence regarding the effect of gestational age and hormonal regulation on the expression of phase II enzymes (n = 16) and drug transporters (n = 38) in the pregnant woman and in the placenta. This comprehensive review exposes gaps in current knowledge of phase II enzyme and drug transporter localization, expression, and regulation during pregnancy, which emphasizes the need for further research. Moreover, the information collected in this review regarding phase II drug-metabolizing enzyme and drug transporter changes will aid in optimizing pregnancy physiologically based pharmacokinetic (PBPK) models to inform dose selection in the pregnant population.
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  • 文章类型: Journal Article
    为了促进腺相关病毒(AAV)治疗的模型知情药物开发(MIDD),我们在小鼠临床前研究后,为AAV开发了基于生理的药代动力学(PBPK)模型。经2E11Vg/小鼠剂量的AAV8和AAV9编码单克隆抗体(mAb)基因,在3周内评估载体和转基因mAb的全身处置。在稳定状态下,AAV8/9发现以下组织-血液(T/B)浓度比:~50用于肝脏;~10用于心脏和肌肉;~2用于大脑,肺,肾,脂肪,和脾脏;骨骼≤1,皮肤,和胰腺。将mAb的T/B值与抗体生物分布系数进行比较,并根据其转基因表达谱鉴定了五个不同的器官簇。所有的生物分布数据被用于开发一个新的AAVPBPK模型,该模型包括:(i)载体的全身分布;(ii)结合,内化,和载体的细胞内加工;(iii)转基因表达和分泌;和(iv)分泌的转基因产物的全身处置。该模型能够相当好地捕获载体和转基因产生的mAb的全身和组织PK。PBPK模型的通路分析表明,肌肉,和心脏是转基因单克隆抗体的主要贡献者。前所未有的PK数据和此处开发的新型PBPK模型为AAV介导的基因疗法的定量系统药理学(QSP)研究提供了基础。PBPK模型还可以用作基于AAV的基因治疗的临床前研究设计和临床前到临床翻译的定量工具。
    To facilitate model-informed drug development (MIDD) of adeno-associated virus (AAV) therapy, here we have developed a physiologically based pharmacokinetic (PBPK) model for AAVs following preclinical investigation in mice. After 2E11 Vg/mouse dose of AAV8 and AAV9 encoding a monoclonal antibody (mAb) gene, whole-body disposition of both the vector and the transgene mAb was evaluated over 3 weeks. At steady-state, the following tissue-to-blood (T/B) concentration ratios were found for AAV8/9: ∼50 for liver; ∼10 for heart and muscle; ∼2 for brain, lung, kidney, adipose, and spleen; ≤1 for bone, skin, and pancreas. T/B values for mAb were compared with the antibody biodistribution coefficients, and five different clusters of organs were identified based on their transgene expression profile. All the biodistribution data were used to develop a novel AAV PBPK model that incorporates: (i) whole-body distribution of the vector; (ii) binding, internalization, and intracellular processing of the vector; (iii) transgene expression and secretion; and (iv) whole-body disposition of the secreted transgene product. The model was able to capture systemic and tissue PK of the vector and the transgene-produced mAb reasonably well. Pathway analysis of the PBPK model suggested that liver, muscle, and heart are the main contributors for the secreted transgene mAb. Unprecedented PK data and the novel PBPK model developed here provide the foundation for quantitative systems pharmacology (QSP) investigations of AAV-mediated gene therapies. The PBPK model can also serve as a quantitative tool for preclinical study design and preclinical-to-clinical translation of AAV-based gene therapies.
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  • 文章类型: Journal Article
    化学品的毒性和风险优先等级对管理和决策至关重要。在这项工作中,我们开发了一种基于受体结合浓度(RBC)的多溴二苯醚(PBDEs)毒性和风险优先排序的新机械排序方法.基于使用分子对接预测的结合亲和常数,通过PBPK模型从人体生物监测数据转换的内部浓度,受体浓度来源于国家生物技术信息中心(NCBI)数据库,计算了49种多溴二苯醚与24种核受体结合的红细胞。成功获得并分析了1176个RBC结果。高溴化多溴二苯醚,包括BDE-201,BDE-205,BDE-203,BDE-196,BDE-183,BDE-206,BDE-207,BDE-153,BDE-208,BDE-204,BDE-197和BDE-209,在相同的日剂量下,其毒性比低溴同系物(BDE-028,BDE-047,BDE-099和对于风险排名,用人体生物监测血清数据,BDE-209的相对红细胞明显高于其他任何一种。对于受体优先级,组成型雄甾烷受体(CAR),类视黄醇X受体α(RXRA),肝X受体α(LXRA)可能是多溴二苯醚在肝脏中引发效应的敏感靶标。总之,高溴化多溴二苯醚比低溴化同类物更有效,因此,除BDE-047和BDE-099外,BDE-209应受到优先控制。总之,这项研究为化学品组的毒性和风险排序提供了一种新的方法,它可以很容易地用于其他人。
    Toxicity and risk priority ranking of chemicals are crucial to management and decision-making. In this work, we develop a new mechanistic ranking approach of toxicity and risk priority ranking for polybrominated diphenyl ethers (PBDEs) based on receptor-bound concentration (RBC). Based on the binding affinity constant predicted using molecular docking, internal concentration converted from human biomonitoring data via PBPK model, and the receptor concentration derived from the national center for biotechnology information (NCBI) database, the RBC of 49 PBDEs binding to 24 nuclear receptors were calculated. 1176 RBC results were successfully obtained and analyzed. High brominated PBDEs, including BDE-201, BDE-205, BDE-203, BDE-196, BDE-183, BDE-206, BDE-207, BDE-153, BDE-208, BDE-204, BDE-197, and BDE-209, exerted more potent than low brominated congeners (BDE-028, BDE-047, BDE-099, and BDE-100) at the same daily intake dose in terms of toxicity ranking. For risk ranking, with human biomonitoring serum data, the relative RBC of BDE-209 was significantly greater than that of any others. For receptor prioritization, constitutive androstane receptor (CAR), retinoid X receptor alpha (RXRA), and liver X receptor alpha (LXRA) may be the sensitive targets for PBDEs to trigger effects in the liver. In summary, high brominated PBDEs are more potent than low brominated congeners, thus, besides BDE-047 and BDE-099, BDE-209 should be priority controlled. In conclusion, this study provides a new approach for toxicity and risk ranking of groups of chemicals, which can readily be used for others.
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  • 文章类型: Journal Article
    受到一系列工作的启发,这些工作证明了分子电荷对抗体药代动力学(PK)的影响,基于生理的药代动力学(PBPK)模型正在出现,这些模型将计算机计算的电荷或多特异性的体外测量与抗体PK参数相关联。然而,在这些研究中,只有等离子体数据被用于模型开发,导致未经验证的假设。这里,我们提出了一个扩展的平台PBPK模型,用于在间质空间和循环血细胞上掺入电荷依赖性内皮细胞胞饮率和非特异性脱靶结合的抗体。同时表征三种抗体电荷变体的全身处置。还探索了各种电荷指标的预测潜力,以及正电荷贴片和负电荷贴片之间的差异(即,PPC-PNC)用作电荷参数,以与非特异性结合亲和力和内皮细胞摄取率建立定量关系。模型很好地捕获了这些电荷变体的全身配置,大多数血浆和组织PK数据的曲线下面积预测误差小于2倍。该模型还预测,随着正电荷的增加,非特异性结合更重要,特别是在大脑中,胞吞率增加,心,肾,肝脏,肺,和脾脏,但在脂肪中保持不变,骨头,肌肉,和皮肤。所呈现的PBPK模型有助于我们对控制带电抗体处置的机制的理解,并且可以用作基于期望的血浆和组织暴露来指导电荷工程的平台。
    Motivated by a series of work demonstrating the effect of molecular charge on antibody pharmacokinetics (PK), physiological-based pharmacokinetic (PBPK) models are emerging that relate in silico calculated charge or in vitro measures of polyspecificity to antibody PK parameters. However, only plasma data has been used for model development in these studies, leading to unvalidated assumptions. Here, we present an extended platform PBPK model for antibodies that incorporate charge-dependent endothelial cell pinocytosis rate and nonspecific off-target binding in the interstitial space and on circulating blood cells, to simultaneously characterize whole-body disposition of three antibody charge variants. Predictive potential of various charge metrics was also explored, and the difference between positive charge patches and negative charge patches (i.e., PPC-PNC) was used as the charge parameter to establish quantitative relationships with nonspecific binding affinities and endothelial cell uptake rate. Whole-body disposition of these charge variants was captured well by the model, with less than 2-fold predictive error in area under the curve of most plasma and tissue PK data. The model also predicted that with greater positive charge, nonspecific binding was more substantial, and pinocytosis rate increased especially in brain, heart, kidney, liver, lung, and spleen, but remained unchanged in adipose, bone, muscle, and skin. The presented PBPK model contributes to our understanding of the mechanisms governing the disposition of charged antibodies and can be used as a platform to guide charge engineering based on desired plasma and tissue exposures.
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  • 文章类型: Journal Article
    左乙拉西坦(Lev)是一种抗癫痫药物,近年来在癫痫儿科人群中使用越来越多,但其在儿科人群中的药代动力学行为需要明确表征。由于伦理和实践因素,儿科药物的临床试验仍然难以进行。这项研究的目的是使用基于生理的药代动力学(PBPK)模型来预测儿科患者Lev血浆暴露的变化,并提供剂量调整的建议。使用PK-Sim®软件开发了成人Lev的PBPK模型,并将其推断到儿科人群的整个年龄范围。使用临床药代动力学数据评估模型。结果显示成人和儿科模型的预测和观察之间的良好拟合。新生儿的推荐剂量,婴儿和儿童是成人的0.78、1.67和1.22倍,分别。此外,在相同的剂量下,青少年的血浆暴露量与成人相似.成功建立了Lev成人和儿科的PBPK模型,并进行了验证,为儿科人群的合理用药提供了参考。
    Levetiracetam (Lev) is an antiepileptic drug that has been increasingly used in the epilepsy pediatric population in recent years, but its pharmacokinetic behavior in pediatric population needs to be characterized clearly. Clinical trials for the pediatric drug remain difficult to conduct due to ethical and practical factors. The purpose of this study was to use the physiologically based pharmacokinetic (PBPK) model to predict changes in plasma exposure of Lev in pediatric patients and to provide recommendations for dose adjustment. A PBPK model of Lev in adults was developed using PK-Sim® software and extrapolated to the entire age range of the pediatric population. The model was evaluated using clinical pharmacokinetic data. The results showed the good fit between predictions and observations of the adult and pediatric models. The recommended doses for neonates, infants and children are 0.78, 1.67 and 1.22 times that of adults, respectively. Moreover, at the same dose, plasma exposure in adolescents was similar to that of adults. The PBPK models of Lev for adults and pediatrics were successfully developed and validated to provide a reference for the rational administration of drugs in the pediatric population.
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