perturbation

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  • 文章类型: Journal Article
    步态分析,不断扩大的研究领域,采用非侵入式传感器和机器学习技术的一系列应用。在这项研究中,我们调查认知衰退状况对步态表现的影响,绘制帕金森病(PD)步态恶化与健康个体双重任务之间的联系。
    我们采用可解释的人工智能(XAI),特别是LRP(LRP),结合卷积神经网络(CNN)来解释受认知负荷影响的步态动力学的复杂模式。
    我们实现了PD数据集的98%F1得分和组合PD数据集的95.5%F1得分的分类准确性。此外,我们探讨认知负荷在健康步态分析中的意义,为受试者认知负荷验证提供90%±10%F1分数的稳健分类精度。我们的发现揭示了认知衰退条件下步态参数的显著改变,突出与PD相关的步态障碍相关的独特模式以及健康受试者中多任务处理引起的模式。通过先进的XAI技术(LRP),我们破译了导致步态变化的基本特征,提供对受认知能力下降影响的具体方面的见解。
    我们的研究建立了步态分析的新视角,证明XAI在阐明PD中步态障碍的共同特征和健康个体的双任务情景中的适用性。XAI提供的可解释性增强了我们辨别步态模式细微变化的能力,有助于对PD和双重任务条件下影响步态动力学的因素有更细致的理解,强调XAI在解开步态控制的复杂性中的作用。
    UNASSIGNED: Gait analysis, an expanding research area, employs non-invasive sensors and machine learning techniques for a range of applications. In this study, we investigate the impact of cognitive decline conditions on gait performance, drawing connections between gait deterioration in Parkinson\'s Disease (PD) and healthy individuals dual tasking.
    UNASSIGNED: We employ Explainable Artificial Intelligence (XAI) specifically Layer-Wise Relevance Propagation (LRP), in conjunction with Convolutional Neural Networks (CNN) to interpret the intricate patterns in gait dynamics influenced by cognitive loads.
    UNASSIGNED: We achieved classification accuracies of 98% F1 scores for PD dataset and 95.5% F1 scores for the combined PD dataset. Furthermore, we explore the significance of cognitive load in healthy gait analysis, resulting in robust classification accuracies of 90% ± 10% F1 scores for subject cognitive load verification. Our findings reveal significant alterations in gait parameters under cognitive decline conditions, highlighting the distinctive patterns associated with PD-related gait impairment and those induced by multitasking in healthy subjects. Through advanced XAI techniques (LRP), we decipher the underlying features contributing to gait changes, providing insights into specific aspects affected by cognitive decline.
    UNASSIGNED: Our study establishes a novel perspective on gait analysis, demonstrating the applicability of XAI in elucidating the shared characteristics of gait disturbances in PD and dual-task scenarios in healthy individuals. The interpretability offered by XAI enhances our ability to discern subtle variations in gait patterns, contributing to a more nuanced comprehension of the factors influencing gait dynamics in PD and dual-task conditions, emphasizing the role of XAI in unraveling the intricacies of gait control.
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  • 文章类型: Journal Article
    我们研究了同时的肌电图和中线脑电图反应,后者包括小脑上方,反复拍打胸骨后,有10名站立的受试者(35±15岁;5名女性)。我们证实了以前的报道,这引起了腿部肌肉的短潜伏期EMG反应,与姿势反射一致。当从小脑上方的电极记录时,EEG功率具有相对更多的高频分量(>30Hz)(Iz,SIz)与其他中线电极相比。我们显示,在先前描述的扰动诱发电位(P1/N1/P2)之前,在小脑(P23,N31,N42,P54)和前部(N28,N57)的短潜伏期出现清晰的中线诱发电位。P23反应与胫骨前肌随后的EMG反应相关。我们得出的结论是,早期活动发生在小脑上方的电极上,以响应对胸骨的短暂敲击。这可能代表小脑活动,并且似乎可以调节短潜伏期的姿势EMG反应。
    We studied simultaneous EMG and midline EEG responses, the latter including over the cerebellum, in 10 standing subjects (35 ± 15 yrs; 5 females) following repeated taps to the sternum. We confirmed previous reports that this evokes short latency EMG responses in leg muscles, consistent with postural reflexes. EEG power had relatively more high frequency components (> 30 Hz) when recorded from electrodes over the cerebellum (Iz, SIz) compared to other midline electrodes. We showed clear midline evoked EEG potentials occurring at short latency over the cerebellum (P23, N31, N42, P54) and frontally (N28, N57) prior to the previously-described perturbation evoked potential (P1/N1/P2). The P23 response correlated with the subsequent EMG response in the tibialis anterior muscles. We conclude that early activity occurs from electrodes over the cerebellum in response to a brief tap to the sternum. This is likely to represent cerebellar activity and it appears to modulate short latency postural EMG responses.
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  • 文章类型: Journal Article
    现代神经网络对随机噪声和蓄意攻击的脆弱性引起了人们对其鲁棒性的担忧,特别是它们越来越多地用于安全和安全关键应用。尽管最近的研究努力通过对抗性示例的重新训练或采用数据增强技术来增强鲁棒性,对训练数据扰动对模型鲁棒性的影响的全面研究仍然缺乏。本文提出了第一个广泛的实证研究,调查了模型再训练过程中数据扰动的影响。实验分析侧重于随机和对抗鲁棒性,遵循稳健性分析领域的既定做法。探索了数据集不同方面的各种类型的扰动,包括输入,标签,和抽样分布。进行单因素和多因素实验来评估个体扰动及其组合。这些发现为构建高质量的训练数据集提供了见解,以优化鲁棒性,并推荐适当程度的训练集扰动,以平衡鲁棒性和正确性,并有助于理解深度学习中的模型鲁棒性,并为通过扰动再训练增强模型性能提供实践指导,促进为安全关键型应用开发更可靠、更值得信赖的深度学习系统。
    The vulnerability of modern neural networks to random noise and deliberate attacks has raised concerns about their robustness, particularly as they are increasingly utilized in safety- and security-critical applications. Although recent research efforts were made to enhance robustness through retraining with adversarial examples or employing data augmentation techniques, a comprehensive investigation into the effects of training data perturbations on model robustness remains lacking. This paper presents the first extensive empirical study investigating the influence of data perturbations during model retraining. The experimental analysis focuses on both random and adversarial robustness, following established practices in the field of robustness analysis. Various types of perturbations in different aspects of the dataset are explored, including input, label, and sampling distribution. Single-factor and multi-factor experiments are conducted to assess individual perturbations and their combinations. The findings provide insights into constructing high-quality training datasets for optimizing robustness and recommend the appropriate degree of training set perturbations that balance robustness and correctness, and contribute to understanding model robustness in deep learning and offer practical guidance for enhancing model performance through perturbed retraining, promoting the development of more reliable and trustworthy deep learning systems for safety-critical applications.
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  • 文章类型: Journal Article
    目的:本研究旨在研究在扰动行走过程中认知任务对脑血流量的影响。
    方法:受试者共20人,由12名21-47岁的健康成年人(成人组)和8名67-85岁的退休居民组成,他们过着独立的日常生活并可以独立行走(老年组)。使用无线功能近红外光谱(fNIRS)测量氧合血红蛋白。使用Wilcoxon秩和检验进行分析,以比较各组中带扰动行走(WP)和带扰动和认知任务行走(WPC)之间氧合血红蛋白的变化。此外,我们通过校正WP值的协方差分析比较了各组之间氧合血红蛋白的变化。
    结果:在成人组中,在WPC下,左和右氧合血红蛋白显着增加(p分别为0.0122,0.0015)。另一方面,在老年群体中,WPC下右侧和左侧氧合血红蛋白无显著变化.
    结论:这些结果表明,在不稳定的步行条件下,认知任务的效果在健康成年人和老年人之间有所不同,当考虑姿势控制策略时,这可能很重要,尤其是老年人。
    OBJECTIVE: This study aimed to examine the effects of cognitive tasks during walking with perturbation on the cerebral blood flow.
    METHODS: The subjects were a total of 20 persons, consisting of 12 healthy adults aged 21-47 years (adult group) and 8 retirement home residents aged 67-85 years who led an independent daily life and could walk independently (elderly group). Oxyhemoglobin was measured using wireless functional near-infrared spectroscopy (fNIRS). An analysis was conducted using the Wilcoxon rank sum test to compare the variation of oxyhemoglobin between walking with perturbation (WP) and walking with perturbation and cognitive tasks (WPC) in each group. In addition, we compared the variation of oxyhemoglobin between groups by analysis of covariance adjusting for the value of WP.
    RESULTS: In the adult group, the left and right oxyhemoglobin significantly increased under WPC (p=0.0122, 0.0015, respectively). On the other hand, in the elderly group, the right and left oxyhemoglobin did not significantly change under WPC.
    CONCLUSIONS: These results suggest that the effect of a cognitive task during unstable walking conditions differs between healthy adults and elderly persons, and that this may be important when considering postural control strategies, especially in the elderly.
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  • 文章类型: Journal Article
    从大量转录组数据推断细胞类型比例在免疫学和肿瘤学中至关重要。这里,我们引入了引导LDA反卷积(GLDADec),一种批量去卷积方法,使用细胞类型特异性标记基因名称来指导主题,以估计每个样本的主题分布。通过使用血液数据集的基准测试,我们证明了它的高估计性能和鲁棒性。此外,我们将GLDADec应用于异质组织批量数据,并以数据驱动的方式进行全面的细胞类型分析.我们证明GLDADec在评估性能方面优于现有方法,并通过检查主题的生物过程的富集来评估其生物可解释性。最后,我们将GLDADec应用于癌症基因组图谱肿瘤样本,基于估计的细胞类型比例进行亚型分层和生存分析,从而证明其在临床中的实用性。这种方法,利用标记基因名称作为部分先验信息,可以应用于批量数据反卷积的各种场景。GLDADec作为开源Python软件包可在https://github.com/mizuno-group/GLDADec上获得。
    Inferring cell type proportions from bulk transcriptome data is crucial in immunology and oncology. Here, we introduce guided LDA deconvolution (GLDADec), a bulk deconvolution method that guides topics using cell type-specific marker gene names to estimate topic distributions for each sample. Through benchmarking using blood-derived datasets, we demonstrate its high estimation performance and robustness. Moreover, we apply GLDADec to heterogeneous tissue bulk data and perform comprehensive cell type analysis in a data-driven manner. We show that GLDADec outperforms existing methods in estimation performance and evaluate its biological interpretability by examining enrichment of biological processes for topics. Finally, we apply GLDADec to The Cancer Genome Atlas tumor samples, enabling subtype stratification and survival analysis based on estimated cell type proportions, thus proving its practical utility in clinical settings. This approach, utilizing marker gene names as partial prior information, can be applied to various scenarios for bulk data deconvolution. GLDADec is available as an open-source Python package at https://github.com/mizuno-group/GLDADec.
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  • 文章类型: Journal Article
    响应于生物膜形成的牙龈炎可能表现出不同的轨迹。本研究的目的是表征不同牙龈炎模式的健康个体的牙龈上微生物群和唾液细胞因子和蛋白质水平的组成。为了检验这一假设,牙龈炎的表现与牙龈上微生物群的具体概况相关,唾液细胞因子,和蛋白质。
    40名口腔和全身健康的人在14天内不接受所有口腔卫生程序,然后是14天的定期口腔护理的解决期。记录牙龈上斑块水平和探查出血(BOP),并在基线时收集牙龈上斑块和唾液样本,第14天和第28天。基于从基线到第14天的BOP%变化,快速(n=15),中等(n=10),和慢(n=15)反应者被确定。牙龈上微生物群组成,唾液细胞因子,和蛋白质水平在基线时进行组间比较,第14天和第28天。
    Capnocytophaga的基线丰度明显更高,Eikenella,并且在快速反应者中记录了弯曲杆菌的种类,而在慢反应者中检测到明显较高的基线链球菌丰度.反应迟钝的人表现出高度的韧性,在基线和14天(第28天)后,微生物组成差异最小。相反,核心微生物群成员的相对丰度存在显著差异,链球菌,放线菌,和Rothia物种,在基线样本中与第28天样本相比,在快速反应者中注意到。在所有组中记录相当的基线细胞因子和蛋白质水平。
    牙龈上微生物群组成,但不是唾液细胞因子和蛋白质谱,似乎会影响全身健康个体牙龈炎发展过程中炎症反应的程度。
    牙龈上微生物群的基线组成可能预测不同的牙龈炎轨迹。牙龈炎后的微生物弹性可能会增强牙龈炎轨迹缓慢的个体的口腔稳态。
    UNASSIGNED: Gingivitis in response to biofilm formation may exhibit different trajectories. The purposes of the present study were to characterize the composition of the supragingival microbiota and salivary cytokine and protein levels in healthy individuals with different gingivitis patterns, to test the hypothesis that manifestations of gingivitis associate with specific profiles in terms of supragingival microbiota, salivary cytokines, and proteins.
    UNASSIGNED: Forty orally and systemically healthy individuals refrained from all oral hygiene procedures for a period of 14 days, followed by a resolution period of 14 days with regular oral care. Supragingival plaque level and bleeding on probing (BOP) were recorded, and supragingival plaque as well as saliva samples were collected at baseline, day 14, and day 28. Based on change in BOP% from baseline to day 14, rapid (n = 15), moderate (n = 10), and slow (n = 15) responders were identified. Supragingival microbiota composition, salivary cytokine, and protein levels were compared between groups at baseline, day 14, and day 28.
    UNASSIGNED: A significantly higher baseline abundance of Capnocytophaga, Eikenella, and Campylobacter species were recorded in rapid responders, whereas a significantly higher baseline abundance of Streptococcus species were detected in slow responders. Slow responders expressed a high degree of resilience, with minimal difference in microbial composition at baseline and after 14 days of resolution (day 28). On the contrary, significant differences in relative abundance of members of the core microbiota, Streptococcus, Actinomyces, and Rothia species, was noted in baseline samples versus day 28 samples in rapid responders. Comparable baseline cytokine and protein levels were recorded in all groups.
    UNASSIGNED: Supragingival microbiota composition, but not saliva cytokine and protein profiles, seems to influence the extent of the inflammatory response during development of gingivitis in systemically healthy individuals.
    Baseline composition of the supragingival microbiota might predict different gingivitis trajectories.Microbial resilience after gingivitis might augment oral homeostasis in individuals with a slow gingivitis trajectory.
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  • 文章类型: Journal Article
    基于质谱的组学技术越来越多地用于扰动研究,以通过识别重要的分子事件将药物作用映射到生物途径。显著性受每个分子参数的倍数变化和变化的影响,而且还通过多次测试校正。虽然折叠变化很大程度上是由生物系统决定的,变化是由实验工作流程决定的。这里,结果表明,使用两种结肠癌细胞系SW480和HCT116,先前传代培养的记忆效应可以影响扰动谱的变化。这些记忆效应很大程度上是由扰动实验中持续存在的生长状态差异驱动的。在SW480单元格中,记忆效应与中度治疗效应相结合,放大了多个组学水平的变异,包括eicosadomics,蛋白质组学,和磷酸蛋白质组学。具有更强的治疗效果,记忆效应不太明显,如在HCT116细胞中所证明的。通过实时监测细胞生长来控制传代培养的同质性。基于组合的蛋白质组和磷酸蛋白质组数据,受控的均质继代培养产生了321个因果猜想的扰动网络,与仅58个因果猜想相比,而没有控制SW480细胞中的继代同质性。确定了一些细胞反应和调节事件,这些反应和调节事件仅在考虑这些记忆效应时扩展了三氧化二砷(ATO)的作用方式。先前受控的继代培养导致发现ATO与硫氧还蛋白还原酶1抑制剂金诺芬的协同组合治疗,这可能证明对NRF2介导的抗性机制的管理有用。
    Mass spectrometry-based omics technologies are increasingly used in perturbation studies to map drug effects to biological pathways by identifying significant molecular events. Significance is influenced by fold change and variation of each molecular parameter, but also by multiple testing corrections. While the fold change is largely determined by the biological system, the variation is determined by experimental workflows. Here, it is shown that memory effects of prior subculture can influence the variation of perturbation profiles using the two colon carcinoma cell lines SW480 and HCT116. These memory effects are largely driven by differences in growth states that persist into the perturbation experiment. In SW480 cells, memory effects combined with moderate treatment effects amplify the variation in multiple omics levels, including eicosadomics, proteomics, and phosphoproteomics. With stronger treatment effects, the memory effect was less pronounced, as demonstrated in HCT116 cells. Subculture homogeneity was controlled by real-time monitoring of cell growth. Controlled homogeneous subculture resulted in a perturbation network of 321 causal conjectures based on combined proteomic and phosphoproteomic data, compared to only 58 causal conjectures without controlling subculture homogeneity in SW480 cells. Some cellular responses and regulatory events were identified that extend the mode of action of arsenic trioxide (ATO) only when accounting for these memory effects. Controlled prior subculture led to the finding of a synergistic combination treatment of ATO with the thioredoxin reductase 1 inhibitor auranofin, which may prove useful in the management of NRF2-mediated resistance mechanisms.
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  • 文章类型: Journal Article
    平衡控制是日常生活活动中流动性和独立性的重要指标。中风后如何影响皮质和肌肉之间的功能耦合以进行平衡控制仍是已知的。我们调查了慢性中风幸存者在具有挑战性的平衡任务中在多个频带上的皮质和腿部肌肉之间的耦合变化。14名中风患者和10名健康对照者执行了一项具有挑战性的平衡任务。他们站在一个计算机化的支持表面上,该表面是固定的(低难度条件)或具有不同增益的摇摆参考(中等和高难度条件)。我们计算了放置在感觉运动区域(脑电图)和腿部肌肉(肌电图)上的电极之间的皮质醇相干性,并使用临床和实验室测试评估了平衡性能。我们发现,在中等困难条件下,与健康对照相比,卒中参与者的δ频带相干性明显降低。但不是在低和高难度条件下。在大多数远端腿部肌肉群中发现了这些差异,但在近端腿部肌肉群中却没有。在其他频带没有发现差异。与健康对照组相比,中风参与者的平衡临床评分较差,但实验室检测没有发现差异。对远端而非近端肌肉组的影响的观察表明,用于平衡控制的两个肌肉组之间的下降连接的(重新)组织存在差异。我们认为,观察到的δ带相干性的组差异表明,由于中风后支撑表面的摇摆参考以维持平衡而导致的体感调节检测机制的平衡上下文依赖性改变。
    Balance control is an important indicator of mobility and independence in activities of daily living. How the functional coupling between the cortex and the muscle for balance control is affected following stroke remains to be known. We investigated the changes in coupling between the cortex and leg muscles during a challenging balance task over multiple frequency bands in chronic stroke survivors. Fourteen participants with stroke and ten healthy controls performed a challenging balance task. They stood on a computerized support surface that was either fixed (low difficulty condition) or sway-referenced with varying gain (medium and high difficulty conditions). We computed corticomuscular coherence between electrodes placed over the sensorimotor area (electroencephalography) and leg muscles (electromyography) and assessed balance performance using clinical and laboratory-based tests. We found significantly lower delta frequency band coherence in stroke participants when compared with healthy controls under medium difficulty condition, but not during low and high difficulty conditions. These differences were found for most of the distal but not for proximal leg muscle groups. No differences were found at other frequency bands. Participants with stroke showed poor balance clinical scores when compared with healthy controls, but no differences were found for laboratory-based tests. The observation of effects at distal but not at proximal muscle groups suggests differences in the (re)organization of the descending connections across two muscle groups for balance control. We argue that the observed group difference in delta band coherence indicates balance context-dependent alteration in mechanisms for the detection of somatosensory modulation resulting from sway-referencing of the support surface for balance maintenance following stroke.
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  • 文章类型: Journal Article
    图像分类,计算机视觉中的一项基本任务,面临着有限数据处理的挑战,可解释性,改进的特征表示,跨不同图像类型的效率,和处理嘈杂的数据。传统的架构方法在解决这些挑战方面进展不足,需要能够进行细粒度分类的架构,提高准确性,和优越的泛化。其中,视觉转换器作为一种值得注意的计算机视觉架构而出现。然而,由于其复杂性和高数据要求,它依赖大量数据进行训练是一个缺点。为了克服这些挑战,本文提出了一种创新的方法,MetaV,将元学习集成到用于医学图像分类的视觉转换器中。采用N向K-shot学习对模型进行训练,利用过去的知识从人类学习机制中汲取灵感。此外,变形卷积和补丁合并技术被纳入视觉变换器模型,以减轻复杂性和过度拟合,同时增强特征表示。为了解决医学图像中的稀缺性和噪声,引入了诸如扰动和网格掩模之类的增强方法。特别是罕见疾病。所提出的模型是使用包括BreakHis、ISIC2019,SIPaKMed,和STARE。实现了89.89%的性能精度,87.33%,94.55%,打破他的80.22%,ISIC2019,SIPaKMed,和STARE,分别,提供证据,验证了所提出的模型与传统模型相比的优越性能,为元视觉图像分类模型设置新的基准。
    Image classification, a fundamental task in computer vision, faces challenges concerning limited data handling, interpretability, improved feature representation, efficiency across diverse image types, and processing noisy data. Conventional architectural approaches have made insufficient progress in addressing these challenges, necessitating architectures capable of fine-grained classification, enhanced accuracy, and superior generalization. Among these, the vision transformer emerges as a noteworthy computer vision architecture. However, its reliance on substantial data for training poses a drawback due to its complexity and high data requirements. To surmount these challenges, this paper proposes an innovative approach, MetaV, integrating meta-learning into a vision transformer for medical image classification. N-way K-shot learning is employed to train the model, drawing inspiration from human learning mechanisms utilizing past knowledge. Additionally, deformational convolution and patch merging techniques are incorporated into the vision transformer model to mitigate complexity and overfitting while enhancing feature representation. Augmentation methods such as perturbation and Grid Mask are introduced to address the scarcity and noise in medical images, particularly for rare diseases. The proposed model is evaluated using diverse datasets including Break His, ISIC 2019, SIPaKMed, and STARE. The achieved performance accuracies of 89.89%, 87.33%, 94.55%, and 80.22% for Break His, ISIC 2019, SIPaKMed, and STARE, respectively, present evidence validating the superior performance of the proposed model in comparison to conventional models, setting a new benchmark for meta-vision image classification models.
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  • 文章类型: Journal Article
    辊涂法在几个行业中具有相当重要的意义,因为它在油漆生产中的实际应用,PVC涂层布的制造,和塑料工业。当前的研究从理论和计算上分析了非等温翻滚过程中粘度可变的Powell-Eyring流体。基于润滑近似理论(LAT),问题被提出来了。使用适当的变换将从数学建模获得的偏微分方程(PDE)系统进一步简化为一组常微分方程(ODE)。实施了一种规则的摄动方法,以获得速度方面的解,压力梯度,压力,和每单位宽度的流量。这项研究还捕获了重要的工程特性,如涂层厚度,努塞尔数,剪切应力,卷/片分离力,并向流体滚动传输动力。除了比较目前的工作和已发表的工作,为了研究各种因素的影响,我们制作了图形和表格表示。观察到速度分布是非牛顿和雷诺粘度参数的递减函数。此外,采用响应面方法(RSM)研究剪切应力和努塞尔数的敏感性。
    The roll coating method is of considerable significance in several industries, as it is applied practically in the production of paint, the manufacturing of PVC-coated cloth, and the plastic industry. The current study theoretically and computationally analyses the Powell-Eyring fluids with variable viscosity during the non-isothermal roll-over web phenomenon. Based on the lubrication approximation theory (LAT), the problem was formulated. The system of partial differential equations (PDEs) obtained from the mathematical modeling was further simplified to a set of ordinary differential equations (ODEs) using suitable transformations. A regular perturbation method was implemented to obtain the solution in terms of velocity, pressure gradient, pressure, and flow rate per unit width. This study also captures important engineering characteristics such as coating thickness, Nusselt number, shear stress, roll/sheet separating force, and roll-transmitted power to the fluid. Along with a comparison between the present work and published work, both graphical and tabular representations wer made to study the effects of various factors. It was observed that the velocity profile is the decreasing function of non-Newtonian and Reynold viscosity parameters. In addition, the response surface methodology (RSM) was employed to investigate the sensitivity of the shear stress and the Nusselt number.
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