ocean biogeochemistry

  • 文章类型: Journal Article
    浮游植物是在海洋中发现的世界上最大的氧气生产者,海洋和大型水体,它们在海洋食物链中起着至关重要的作用。不平衡的生物地球化学特征,如盐度,pH值,矿物,等。,会阻碍他们的成长。随着更好硬件的进步,人工智能技术的使用正在迅速增加,以创建一个智能决策系统。因此,我们试图通过对针对全球水域中的全球浮游植物水平的再分析数据使用监督回归来克服这一差距。提出的实验提出了不同的监督机器学习回归技术的应用,如随机森林,额外的树木,从哥白尼全球海洋生物地球化学Hindcast数据集获得的再分析数据上的基于bagging和基于直方图的梯度增强回归量。从实验获得的结果预测了浮游植物的水平,其决定系数得分(R2)高达0.96。在对更大的数据集进行进一步验证后,该模型可以部署在生产环境中,以补充原位测量工作。
    Phytoplankton are the world\'s largest oxygen producers found in oceans, seas and large water bodies, which play crucial roles in the marine food chain. Unbalanced biogeochemical features like salinity, pH, minerals, etc., can retard their growth. With advancements in better hardware, the usage of Artificial Intelligence techniques is rapidly increasing for creating an intelligent decision-making system. Therefore, we attempt to overcome this gap by using supervised regressions on reanalysis data targeting global phytoplankton levels in global waters. The presented experiment proposes the applications of different supervised machine learning regression techniques such as random forest, extra trees, bagging and histogram-based gradient boosting regressor on reanalysis data obtained from the Copernicus Global Ocean Biogeochemistry Hindcast dataset. Results obtained from the experiment have predicted the phytoplankton levels with a coefficient of determination score (R2) of up to 0.96. After further validation with larger datasets, the model can be deployed in a production environment in an attempt to complement in-situ measurement efforts.
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  • 文章类型: Journal Article
    大量的凝胶状浮游动物,沿海水域富含蛋白质的生物质的重要来源,经常迅速崩溃,将大量不稳定的碎屑有机物(OM)释放到周围的水中。尽管这些水华有可能对海洋生态系统造成重大扰动,它们对微生物群落以及因此对生物地球化学循环的影响尚未阐明。我们进行了微观实验,模拟了亚得里亚海北部ctenophore(Mnemimopsisleidyi)开花后沿海细菌群落经历的情景。24小时内,观察到细菌群落对M.leidyiOM的快速反应,以细菌生物量产生和呼吸速率升高为特征。然而,与我们之前对水母(Aureliaauritas.l.)的微观世界研究相比,M.leidyiOM降解的特征是细菌生长效率显着降低,这意味着储存在OM中的碳大部分是呼吸的。宏基因组和蛋白质组学联合分析表明,降解活性主要由假交替单胞菌进行,产生大量蛋白水解胞外酶并表现出高代谢活性。有趣的是,重新构建的宏基因组组装基因组(MAG)与先前在我们的A.aurita微观世界研究中重建的MAG几乎相同(平均核苷酸同一性>99%),尽管两种胶状浮游动物物种的基本遗传和生化差异。一起来看,我们的数据表明,不同的凝胶状浮游动物的繁殖可能会引发自然细菌群落的一致反应,特定的细菌谱系驱动凝胶状OM的再矿化。重要的水母水华越来越成为海洋生态系统中反复出现的季节性事件,其特征是凝胶状生物质的快速积累,迅速崩溃。尽管这些水华有可能引起重大扰动,它们对海洋微生物群落的影响在很大程度上是未知的。我们进行了一项孵化实验,模拟了亚得里亚海北部的ctenophoreMnemimopsisleidyi的开花,我们调查了细菌对凝胶状生物质的反应。我们发现细菌群落积极降解凝胶状有机物,总体上与水母Aureliaauritas.l模拟开花后观察到的动力学具有惊人的相似性。在这两种情况下,我们发现一种细菌,假交替单胞菌,是大部分降解活性的原因。这表明,不同水母的开花可能会引发自然细菌群落的一致反应,特定的细菌物种驱动凝胶状生物质的再矿化。
    Blooms of gelatinous zooplankton, an important source of protein-rich biomass in coastal waters, often collapse rapidly, releasing large amounts of labile detrital organic matter (OM) into the surrounding water. Although these blooms have the potential to cause major perturbations in the marine ecosystem, their effects on the microbial community and hence on the biogeochemical cycles have yet to be elucidated. We conducted microcosm experiments simulating the scenario experienced by coastal bacterial communities after the decay of a ctenophore (Mnemiopsis leidyi) bloom in the northern Adriatic Sea. Within 24 h, a rapid response of bacterial communities to the M. leidyi OM was observed, characterized by elevated bacterial biomass production and respiration rates. However, compared to our previous microcosm study of jellyfish (Aurelia aurita s.l.), M. leidyi OM degradation was characterized by significantly lower bacterial growth efficiency, meaning that the carbon stored in the OM was mostly respired. Combined metagenomic and metaproteomic analysis indicated that the degradation activity was mainly performed by Pseudoalteromonas, producing a large amount of proteolytic extracellular enzymes and exhibiting high metabolic activity. Interestingly, the reconstructed metagenome-assembled genome (MAG) of Pseudoalteromonas phenolica was almost identical (average nucleotide identity >99%) to the MAG previously reconstructed in our A. aurita microcosm study, despite the fundamental genetic and biochemical differences of the two gelatinous zooplankton species. Taken together, our data suggest that blooms of different gelatinous zooplankton are likely triggering a consistent response from natural bacterial communities, with specific bacterial lineages driving the remineralization of the gelatinous OM.IMPORTANCEJellyfish blooms are increasingly becoming a recurring seasonal event in marine ecosystems, characterized by a rapid build-up of gelatinous biomass that collapses rapidly. Although these blooms have the potential to cause major perturbations, their impact on marine microbial communities is largely unknown. We conducted an incubation experiment simulating a bloom of the ctenophore Mnemiopsis leidyi in the Northern Adriatic, where we investigated the bacterial response to the gelatinous biomass. We found that the bacterial communities actively degraded the gelatinous organic matter, and overall showed a striking similarity to the dynamics previously observed after a simulated bloom of the jellyfish Aurelia aurita s.l. In both cases, we found that a single bacterial species, Pseudoalteromonas phenolica, was responsible for most of the degradation activity. This suggests that blooms of different jellyfish are likely to trigger a consistent response from natural bacterial communities, with specific bacterial species driving the remineralization of gelatinous biomass.
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  • 文章类型: Journal Article
    微量营养素铁在确定全球海洋初级生产的规模和分布中起着重要作用。因此,了解来源,水槽,驱动铁的海洋分布的内部循环过程是释放铁在全球碳循环和气候中的作用的关键,无论是今天还是地质时代。海水的铁同位素分析已成为诊断海洋铁源和追踪生物地球化学过程的变革性工具。在这次审查中,我们总结了不同铁源通量的最终成员同位素特征,并强调了使用这种示踪剂获得的铁源新见解。我们还回顾了铁同位素分馏可用于了解铁的内部海洋循环的方法,包括物种变化,生物摄取,和粒子清除。最后,我们概述了扩大这种尖端示踪剂利用所需的未来研究。
    The micronutrient iron plays a major role in setting the magnitude and distribution of primary production across the global ocean. As such, an understanding of the sources, sinks, and internal cycling processes that drive the oceanic distribution of iron is key to unlocking iron\'s role in the global carbon cycle and climate, both today and in the geologic past. Iron isotopic analyses of seawater have emerged as a transformative tool for diagnosing iron sources to the ocean and tracing biogeochemical processes. In this review, we summarize the end-member isotope signatures of different iron source fluxes and highlight the novel insights into iron provenance gained using this tracer. We also review ways in which iron isotope fractionation might be used to understand internal oceanic cycling of iron, including speciation changes, biological uptake, and particle scavenging. We conclude with an overview of future research needed to expand the utilization of this cutting-edge tracer.
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  • 文章类型: Journal Article
    当前对海洋中溶解的铁(Fe)形态的理解基于两种根本不同的方法:测量异质配体池的整体性质的电化学方法和在分子水平上表征配体的液相色谱质谱方法。这里,我们描述了一种通过使用液相色谱-电感耦合质谱法监测配体结合的56Fe与57Fe的交换,同时测定海水中天然存在的配体套件的Fe-配体解离速率常数(kd)的方法。确定了在海水中的铁铬和铁胺E溶液的kd值,铁的解离速率常数(kd=10×10-8s-1)大于铁胺E的解离速率常数(kd=3.6×10-8s-1)。两种化合物在海水中的速度比纯净水快两倍以上,这表明海水盐会加速解离。天然海水有机提取物的同位素交换实验表明,与色谱上未解析的溶解有机物相关的配体结合位点比两栖蛋白铁载体(kd=2.15×10-6s-1)更快地交换Fe(kd=1.8×10-5s-1)和一个具有m/z709(kd=9.6×10-6s-1)的未鉴定的铁载体。这些发现表明,我们的方法可以将分子水平的配体识别与动力学和热力学金属结合特性桥接起来。
    Current understanding of dissolved iron (Fe) speciation in the ocean is based on two fundamentally different approaches: electrochemical methods that measure bulk properties of a heterogeneous ligand pool and liquid chromatography mass spectrometry methods that characterize ligands at a molecular level. Here, we describe a method for simultaneously determining Fe-ligand dissociation rate constants (kd) of suites of naturally occurring ligands in seawater by monitoring the exchange of ligand-bound 56Fe with 57Fe using liquid chromatography-inductively coupled mass spectrometry. Values of kd were determined for solutions of ferrichrome and ferrioxamine E. In seawater, the dissociation rate constant of ferrichrome (kd = 10 × 10-8 s-1) was greater than that of ferrioxamine E (kd = 3.6 × 10-8 s-1). The rates for both compounds were over twice as fast in seawater compared with pure water, suggesting that seawater salts accelerate dissociation. Isotope exchange experiments on organic extracts of natural seawater indicated that ligand-binding sites associated with chromatographically unresolved dissolved organic matter exchanged Fe more quickly (kd = 1.8 × 10-5 s-1) than amphibactin siderophores (kd = 2.15 × 10-6 s-1) and an unidentified siderophore with m/z 709 (kd = 9.6 × 10-6 s-1). These findings demonstrate that our approach can bridge molecular-level ligand identification with kinetic and thermodynamic metal-binding properties.
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  • 文章类型: Journal Article
    Anthropogenically forced changes in ocean biogeochemistry are underway and critical for the ocean carbon sink and marine habitat. Detecting such changes in ocean biogeochemistry will require quantification of the magnitude of the change (anthropogenic signal) and the natural variability inherent to the climate system (noise). Here we use Large Ensemble (LE) experiments from four Earth system models (ESMs) with multiple emissions scenarios to estimate Time of Emergence (ToE) and partition projection uncertainty for anthropogenic signals in five biogeochemically important upper-ocean variables. We find ToEs are robust across ESMs for sea surface temperature and the invasion of anthropogenic carbon; emergence time scales are 20-30 yr. For the biological carbon pump, and sea surface chlorophyll and salinity, emergence time scales are longer (50+ yr), less robust across the ESMs, and more sensitive to the forcing scenario considered. We find internal variability uncertainty, and model differences in the internal variability uncertainty, can be consequential sources of uncertainty for projecting regional changes in ocean biogeochemistry over the coming decades. In combining structural, scenario, and internal variability uncertainty, this study represents the most comprehensive characterization of biogeochemical emergence time scales and uncertainty to date. Our findings delineate critical spatial and duration requirements for marine observing systems to robustly detect anthropogenic change.
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  • 文章类型: Journal Article
    人为的气候变化导致我们的海洋以前所未有的速度失去氧气并变得更加酸性,威胁海洋生态系统及其相关动物。在深海环境中,在地质时间尺度上,条件通常会发生变化,相关的动物,适应这些稳定的条件,预计将非常容易受到任何变化或直接的人为影响。我们的研究合并了最长的深海观测海洋学时间序列之一,追溯到1960年代,现代视觉调查描述了近两公里的底栖海山生态系统。基于我们对P线海洋监测数据的新的严格分析,在过去的60年中,东北太平洋(NEP)的3,000m上部损失了15%的氧气。在那段时间里,氧气最小区域(OMZ),范围在大约480到1700米之间,以3.0±0.7米/年的速度扩张(由于底部加深)。此外,自1980年代以来,OMZ上方的碳酸盐岩饱和层一直以每年1-2m的速度浅滩。根据我们对四个NEP海山的视觉调查,这些深海特征支持以长寿命为代表的生态重要分类群,缓慢的增长率,和有限的流动性,包括形成栖息地的冷水珊瑚和海绵,棘皮动物,和鱼。通过检查一部分脆弱人群的狭窄已实现测深生态位的变化条件,我们解决了化学趋势,这些趋势与分类群的寿命相比是快速的,并且不利于它们的生存。如果这些趋势像过去三到六十年一样继续下去,它们有可能削弱区域海山生态系统的多样性,并导致局部灭绝。这项研究强调了减轻人类直接影响的重要性,因为物种继续遭受我们无法立即控制的环境变化。
    Anthropogenic climate change is causing our oceans to lose oxygen and become more acidic at an unprecedented rate, threatening marine ecosystems and their associated animals. In deep-sea environments, where conditions have typically changed over geological timescales, the associated animals, adapted to these stable conditions, are expected to be highly vulnerable to any change or direct human impact. Our study coalesces one of the longest deep-sea observational oceanographic time series, reaching back to the 1960s, with a modern visual survey that characterizes almost two vertical kilometers of benthic seamount ecosystems. Based on our new and rigorous analysis of the Line P oceanographic monitoring data, the upper 3,000 m of the Northeast Pacific (NEP) has lost 15% of its oxygen in the last 60 years. Over that time, the oxygen minimum zone (OMZ), ranging between approximately 480 and 1,700 m, has expanded at a rate of 3.0 ± 0.7 m/year (due to deepening at the bottom). Additionally, carbonate saturation horizons above the OMZ have been shoaling at a rate of 1-2 m/year since the 1980s. Based on our visual surveys of four NEP seamounts, these deep-sea features support ecologically important taxa typified by long life spans, slow growth rates, and limited mobility, including habitat-forming cold water corals and sponges, echinoderms, and fish. By examining the changing conditions within the narrow realized bathymetric niches for a subset of vulnerable populations, we resolve chemical trends that are rapid in comparison to the life span of the taxa and detrimental to their survival. If these trends continue as they have over the last three to six decades, they threaten to diminish regional seamount ecosystem diversity and cause local extinctions. This study highlights the importance of mitigating direct human impacts as species continue to suffer environmental changes beyond our immediate control.
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  • 文章类型: Journal Article
    Biogeochemical-Argo (BGC-Argo) is a network of profiling floats carrying sensors that enable observation of as many as six essential biogeochemical and bio-optical variables: oxygen, nitrate, pH, chlorophyll a, suspended particles, and downwelling irradiance. This sensor network represents today\'s most promising strategy for collecting temporally and vertically resolved observations of biogeochemical properties throughout the ocean. All data are freely available within 24 hours of transmission. These data fill large gaps in ocean-observing systems and support three ambitions: gaining a better understanding of biogeochemical processes (e.g., the biological carbon pump and air-sea CO2 exchanges) and evaluating ongoing changes resulting from increasing anthropogenic pressure (e.g., acidification and deoxygenation); managing the ocean (e.g., improving the global carbon budget and developing sustainable fisheries); and carrying out exploration for potential discoveries. The BGC-Argo network has already delivered extensive high-quality global data sets that have resulted in unique scientific outcomes from regional to global scales. With the proposed expansion of BGC-Argo in the near future, this network has the potential to become a pivotal observation system that links satellite and ship-based observations in a transformative manner.
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  • 文章类型: Journal Article
    新生产(新P,由外源供应的限制性营养素支持的净初级生产速率(NPP)和净社区生产速率(NCP,不被社区呼吸消耗的初级生产总值)是密切相关的,但在机械上是不同的过程。他们设定了上层海洋的碳平衡,并定义了系统出口的上限。的关系,新磷的相对大小和变异性(来自15NO3-吸收),O2:基于氩气的NCP和下沉颗粒出口(基于238U:234Th不平衡)越来越有文献记载,但仍未明确了解。在极地边缘冰区等偏远地区尤其如此。在这里,我们介绍了2012-2014年盛夏(1月)在南极半岛西部(WAP)大陆架上大约50个站点进行的同时测量的3年数据集。在同一站点,还估计了硝酸盐和碘化物的水柱库存(0-150m)的净季节性变化。基于库存变化的平均每日费率超过了短期费率测量。库存估计的相对规模的主要不确定性是指定海冰退缩后生长季节的开始。新P和NCP(O2)没有显著差别。新P和NCP(O2)明显大于th234的沉降颗粒出口。我们建议这是一种持续和系统的不平衡,其他过程,例如垂直混合和悬浮颗粒的平流是重要的出口途径。本文是主题为“南极半岛西部的海洋系统:快速变化地区的现状和发展战略”的一部分。
    New production (New P, the rate of net primary production (NPP) supported by exogenously supplied limiting nutrients) and net community production (NCP, gross primary production not consumed by community respiration) are closely related but mechanistically distinct processes. They set the carbon balance in the upper ocean and define an upper limit for export from the system. The relationships, relative magnitudes and variability of New P (from 15NO3- uptake), O2 : argon-based NCP and sinking particle export (based on the 238U : 234Th disequilibrium) are increasingly well documented but still not clearly understood. This is especially true in remote regions such as polar marginal ice zones. Here we present a 3-year dataset of simultaneous measurements made at approximately 50 stations along the Western Antarctic Peninsula (WAP) continental shelf in midsummer (January) 2012-2014. Net seasonal-scale changes in water column inventories (0-150 m) of nitrate and iodide were also estimated at the same stations. The average daily rates based on inventory changes exceeded the shorter-term rate measurements. A major uncertainty in the relative magnitude of the inventory estimates is specifying the start of the growing season following sea-ice retreat. New P and NCP(O2) did not differ significantly. New P and NCP(O2) were significantly greater than sinking particle export from thorium-234. We suggest this is a persistent and systematic imbalance and that other processes such as vertical mixing and advection of suspended particles are important export pathways.This article is part of the theme issue \'The marine system of the west Antarctic Peninsula: status and strategy for progress in a region of rapid change\'.
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  • 文章类型: Journal Article
    Hydrothermal activity occurs in all ocean basins, releasing high concentrations of key trace elements and isotopes (TEIs) into the oceans. Importantly, the calculated rate of entrainment of the entire ocean volume through turbulently mixing buoyant hydrothermal plumes is so vigorous as to be comparable to that of deep-ocean thermohaline circulation. Consequently, biogeochemical processes active within deep-ocean hydrothermal plumes have long been known to have the potential to impact global-scale biogeochemical cycles. More recently, new results from GEOTRACES have revealed that plumes rich in dissolved Fe, an important micronutrient that is limiting to productivity in some areas, are widespread above mid-ocean ridges and extend out into the deep-ocean interior. While Fe is only one element among the full suite of TEIs of interest to GEOTRACES, these preliminary results are important because they illustrate how inputs from seafloor venting might impact the global biogeochemical budgets of many other TEIs. To determine the global impact of seafloor venting, however, requires two key questions to be addressed: (i) What processes are active close to vent sites that regulate the initial high-temperature hydrothermal fluxes for the full suite of TEIs that are dispersed through non-buoyant hydrothermal plumes? (ii) How do those processes vary, globally, in response to changing geologic settings at the seafloor and/or the geochemistry of the overlying ocean water? In this paper, we review key findings from recent work in this realm, highlight a series of key hypotheses arising from that research and propose a series of new GEOTRACES modelling, section and process studies that could be implemented, nationally and internationally, to address these issues.This article is part of the themed issue \'Biological and climatic impacts of ocean trace element chemistry\'.
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  • 文章类型: Journal Article
    As the iron supplied from hydrothermalism is ultimately ventilated in the iron-limited Southern Ocean, it plays an important role in the ocean biological carbon pump. We deploy a set of focused sensitivity experiments with a state of the art global model of the ocean to examine the processes that regulate the lifetime of hydrothermal iron and the role of different ridge systems in governing the hydrothermal impact on the Southern Ocean biological carbon pump. Using GEOTRACES section data, we find that stabilization of hydrothermal iron is important in some, but not all regions. The impact on the Southern Ocean biological carbon pump is dominated by poorly explored southern ridge systems, highlighting the need for future exploration in this region. We find inter-basin differences in the isopycnal layer onto which hydrothermal Fe is supplied between the Atlantic and Pacific basins, which when combined with the inter-basin contrasts in oxidation kinetics suggests a muted influence of Atlantic ridges on the Southern Ocean biological carbon pump. Ultimately, we present a range of processes, operating at distinct scales, that must be better constrained to improve our understanding of how hydrothermalism affects the ocean cycling of iron and carbon.This article is part of the themed issue \'Biological and climatic impacts of ocean trace element chemistry\'.
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