nsps, Non-structural proteins

nsps,非结构蛋白
  • 文章类型: Case Reports
    自2019年下半年以来,由新型冠状病毒引起的传染性新冠肺炎一直在广泛传播。Where,印度是受影响第二大的国家,死亡率排名第三。在世界古代历史上,药用植物在治疗多种疾病中起着至关重要的作用。在目前的研究中,我们展示了一些新的天然药用植物代谢物作为木瓜蛋白酶样蛋白酶(PLpro)的潜在抑制剂,主要蛋白酶(Mpro)和RNA依赖性RNA聚合酶(RdRp),Covid-19的跨膜蛋白酶丝氨酸2(TMPRSS2)和血管紧张素转换酶2(ACE-2)。植物代谢物已被证明可以抑制SARS-CoV,它也可以积极对抗Covid-19。
    Transmissible Covid-19, caused by novel corona virus since last of 2019 has outspread widely until now. Where, India was the second most affected country and 3rd in mortality rate. In world ancient history, medicinal plants were played a crucial role to cure several diseases. In present study, we show some novel natural medicinal plant metabolites as the potential inhibitors against papain-like protease (PLpro), main protease (Mpro) and RNA-dependent RNA polymerase (RdRp), transmembrane proteinase Serine 2 (TMPRSS2) and angiotensin converting enzyme-2 (ACE-2) of Covid-19. Plant metabolites were having been proven to inhibit SARS-CoVs, which also actively walkable against Covid-19.
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  • 文章类型: Journal Article
    由严重急性呼吸道综合症冠状病毒2(SARS-CoV-2)引起的冠状病毒病-2019(COVID-19)大流行已经严重影响了世界各地的公共卫生。对SARS-CoV-2致病机制的深入研究对于大流行预防是迫切需要的。然而,SARS-CoV-2的大多数实验室研究必须在生物安全3级(BSL-3)实验室进行,极大地制约了相关实验的进展。在这项研究中,我们使用细菌人工染色体(BAC)方法在VeroE6细胞中组装SARS-CoV-2复制和转录系统,而没有病毒包膜形成,从而避免了冠状病毒暴露的风险。此外,改进的实时定量逆转录PCR(RT-qPCR)方法用于区分全长复制子RNA的复制和亚基因组RNA(sgRNA)的转录.使用SARS-CoV-2复制子,我们证明了SARS-CoV-2的核衣壳(N)蛋白在不连续合成过程中促进了sgRNA的转录。此外,两种N蛋白的高频突变体,R203K和S194L,能明显提高复制子的转录水平,暗示这些突变可能使SARS-CoV-2更快地传播和繁殖。此外,remdesivir和氯喹,在先前的研究中,两种众所周知的药物被证明对冠状病毒有效,也抑制了我们复制子的转录,表明该系统在抗病毒药物发现中的潜在应用。总的来说,我们开发了一种生物安全且有价值的SARS-CoV-2复制子系统,该系统可用于研究病毒RNA合成的机制,并且在新型抗病毒药物筛选中具有潜力。
    The coronavirus disease-2019 (COVID-19) pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has seriously affected public health around the world. In-depth studies on the pathogenic mechanisms of SARS-CoV-2 is urgently necessary for pandemic prevention. However, most laboratory studies on SARS-CoV-2 have to be carried out in bio-safety level 3 (BSL-3) laboratories, greatly restricting the progress of relevant experiments. In this study, we used a bacterial artificial chromosome (BAC) method to assemble a SARS-CoV-2 replication and transcription system in Vero E6 cells without virion envelope formation, thus avoiding the risk of coronavirus exposure. Furthermore, an improved real-time quantitative reverse transcription PCR (RT-qPCR) approach was used to distinguish the replication of full-length replicon RNAs and transcription of subgenomic RNAs (sgRNAs). Using the SARS-CoV-2 replicon, we demonstrated that the nucleocapsid (N) protein of SARS-CoV-2 facilitates the transcription of sgRNAs in the discontinuous synthesis process. Moreover, two high-frequency mutants of N protein, R203K and S194L, can obviously enhance the transcription level of the replicon, hinting that these mutations likely allow SARS-CoV-2 to spread and reproduce more quickly. In addition, remdesivir and chloroquine, two well-known drugs demonstrated to be effective against coronavirus in previous studies, also inhibited the transcription of our replicon, indicating the potential applications of this system in antiviral drug discovery. Overall, we developed a bio-safe and valuable replicon system of SARS-CoV-2 that is useful to study the mechanisms of viral RNA synthesis and has potential in novel antiviral drug screening.
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  • 文章类型: Journal Article
    未经批准:2019年12月,一种新型冠状病毒,SARS-CoV-2在全球范围内引起一系列急性非典型呼吸道疾病。然而,仍然缺乏疗效明确的药物,疫苗的临床试验研究尚未完全完成。
    UASSIGNED:LH胶囊是批准的中药成药,广泛用于治疗由感冒和流感引起的呼吸道传染病。2020年4月12日,根据通过多中心证明的安全性和有效性,中国食品药品监督管理局(CFDA)正式将LH胶囊和颗粒重新用于轻度COVID-19患者,随机化,对照临床试验。我们希望通过现代药学方法对其进行全面回顾,并试图解释其可能的机制。
    未经授权:使用连花清温黄体胶囊的全称,连花清温和SARS-COV-2、COVID-19作为搜索词的关键词,在各种数据库(如WebofScience和PubMed)中系统地搜索现有的相关论文。并在ClinicalTrials.gov和中国临床试验注册中心完成了临床数据的收集。最后但并非最不重要的,我们通过文献和Selleck整理了LH胶囊的抗炎和抗病毒机制。
    UNASSIGNED:这篇综述系统地梳理了LH胶囊中的活性成分。此外,详细讨论了LH胶囊对SARS-CoV-2,IAV和IBV的相关药理和临床试验。此外,本综述首次概述了LH胶囊中特定物质参与SARS-COV-2感染抗性和抑制IL-6引起的细胞因子风暴综合征(CSS)的潜在分子机制。
    UNASSIGNED:本综述总结了支持使用LH胶囊作为预防和治疗COVID-19的潜在候选药物的现有报告和证据。然而,中医通过多靶点、多途径发挥作用,LH胶囊也不例外。因此,相关机制有待进一步完善和实验验证。
    UNASSIGNED: In December 2019, a novel coronavirus, SARS-CoV-2 caused a series of acute atypical respiratory diseases worldwide. However, there is still a lack of drugs with clear curative effects, and the clinical trial research of vaccines has not been completely finished.
    UNASSIGNED: LH capsules are approved TCM patent medicine that are widely used for the treatment of respiratory tract infectious diseases caused by colds and flu. On April 12, 2020, LH capsules and granules were officially repurposed by the China Food and Drug Administration (CFDA) for patients with mild COVID-19 based on their safety and efficacy demonstrated through multicentre, randomized, controlled clinical trials. We hope to conduct a comprehensive review of it through modern pharmacy methods, and try to explain its possible mechanism.
    UNASSIGNED: Using the full names of LH capsules Lianhuaqingwen, Lianhua Qingwen andSARS-COV-2, COVID-19 as the keywords of the search terms, systemically search for existing related papers in various databases such as Web of Science and PubMed. And completed the collection of clinical data in ClinicalTrials.gov and Chinese Clinical Trial Registry. Last but not least, we have sorted out the anti-inflammatory and antiviral mechanisms of LH capsules through literature and Selleck.
    UNASSIGNED: This review systematically sorted out the active ingredients in LH capsules. Furthermore, the related pharmacological and clinical trials of LH capsule on SARS-CoV-2, IAV and IBV were discussed in detail. Moreover, the present review provides the first summary of the potential molecular mechanism of specific substances in LH capsules involved in resistance to SARS-COV-2 infection and the inhibition of cytokine storm syndrome (CSS) caused by IL-6.
    UNASSIGNED: This review summarizes the available reports and evidence that support the use of LH capsules as potential drug candidates for the prevention and treatment of COVID-19. However, TCM exerts its effects through multiple targets and multiple pathways, and LH capsules are not an exception. Therefore, the relevant mechanisms need to be further improved and experimentally verified.
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  • 文章类型: Journal Article
    严重急性呼吸道综合症最近由于新型冠状病毒在缺乏有效治疗的情况下对整个世界造成生命威胁而复发。为了阻止致命的SARSCoV-2在宿主细胞内的复制,已使用AutoDockVina针对RdRp进行了来自AsinexEliteSynergy和BioDesign文库的总共267,324个配体的计算机虚拟筛选。分子建模研究揭示了21个大环命中(2-22)的鉴定,其结合能比remdesivir(1)更好,上市的SARSCoV-2抑制剂。Further,使用药物相似度规则和它们的ADMET谱进行的分析显示,由于具有优异的口服生物利用度和可药用性,因此这些命中的候选资格.Further,使用GROMACS2020.1进行10ns的前两个命中(2和3)的MD模拟研究表明,它们在对接复合物中的稳定性。这些结果为设计作为SARSCoV-2RNA复制酶抑制剂的大环命中提供了重要的突破。
    Severe acute respiratory syndrome has relapsed recently as novel coronavirus causing a life threat to the entire world in the absence of an effective therapy. To hamper the replication of the deadly SARS CoV-2 inside the host cells, systematic in silico virtual screening of total 267,324 ligands from Asinex EliteSynergy and BioDesign libraries has been performed using AutoDock Vina against RdRp. The molecular modeling studies revealed the identification of twenty-one macrocyclic hits (2-22) with better binding energy than remdesivir (1), marketed SARS CoV-2 inhibitor. Further, the analysis using rules for drug-likeness and their ADMET profile revealed the candidature of these hits due to superior oral bioavailability and druggability. Further, the MD simulation studies of top two hits (2 and 3) performed using GROMACS 2020.1 for 10 ns revealed their stability into the docked complexes. These results provide an important breakthrough in the design of macrocyclic hits as SARS CoV-2 RNA replicase inhibitor.
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  • 文章类型: Journal Article
    人类严重急性呼吸道综合症冠状病毒2(SARS-CoV-2)感染的高死亡率以及缺乏有效的治疗方案,因此需要鉴定新的抗病毒药物。SARS-CoV-2依赖于非结构蛋白,例如Nsp13解旋酶和nsp14,它们是复制-转录复合物(RTC)的关键成分,以完成其感染生命周期。因此,用小分子靶向这些必需的病毒蛋白将最有可能阻止疾病的发病机理。这些蛋白质的实验结构的缺乏阻碍了其特异性抑制剂的基于结构的鉴定过程。在本研究中,使用比较同源性建模方法阐明了SARS-CoV-2nsp13解旋酶和nsp14蛋白的计算机模型。使用各种参数,如Ramachandran图,验证3D评分,ERRAT评分,基于知识的能量和Z分数。计算机模拟模型进一步用于食品和药物管理局(FDA)批准的抗病毒药物的虚拟筛选。Simeprevir(SMV),与对照抑制剂相比,Paritaprevir(PTV)和Grazoprevir(GZR)是鉴定出的常见前导,它们对nsp13解旋酶和nsp14均显示出更高的结合亲和力,因此,它们可能是潜在的双靶点抑制剂。引线还建立了氢键和疏水相互作用的网络,其与衬在活性位点袋上的关键残基。目前的发现表明,在通过体外和体内研究验证了计算机模拟结果后,这些FDA批准的抗病毒药物可以针对SARS-CoV-2感染进行再利用。
    The high mortality rate from the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections in humans and the lack of effective therapeutic regime for its treatment necessitates the identification of new antivirals. SARS-CoV-2 relies on non-structural proteins such as Nsp13 helicase and nsp14 which are the key components of the replication-transcription complex (RTC) to complete its infectious life cycle. Therefore, targeting these essential viral proteins with small molecules will most likely to halt the disease pathogenesis. The lack of experimental structures of these proteins deters the process of structure-based identification of their specific inhibitors. In the present study, the in silico models of SARS-CoV-2 nsp13 helicase and nsp14 protein were elucidated using a comparative homology modelling approach. These in silico model structures were validated using various parameters such as Ramachandran plot, Verify 3D score, ERRAT score, knowledge-based energy and Z-score. The in silico models were further used for virtual screening of the Food and Drug Administration (FDA) approved antiviral drugs. Simeprevir (SMV), Paritaprevir (PTV) and Grazoprevir (GZR) were the common leads identified which show higher binding affinity to both nsp13 helicase and nsp14 as compared to the control inhibitors and therefore, they might be potential dual-target inhibitors. The leads also establish a network of hydrogen bonds and hydrophobic interactions with the key residues lining the active site pockets. The present findings suggest that these FDA approved antiviral drugs can be subjected to repurposing against SARS-CoV-2 infection after verifying the in silico results through in vitro and in vivo studies.
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