nrfA gene

  • 文章类型: Journal Article
    异化硝酸盐还原成铵(DNRA)是淡水沉积物中重要的硝酸盐还原途径。许多研究都集中在各种自然栖息地的DNRA过程上。然而,梯级水库的联合运行将影响沉积物的物理和化学性质,这可能会改变级联水库表层沉积物中的DNRA过程和细菌群落模式。我们的研究是第一个调查潜在DNRA率的时空分布模式,nrfA基因丰度,澜沧江梯级水库表层沉积物中的DNRA细菌群落多样性。浆液培养实验结合15N同位素示踪实验确定DNRA的潜在速率为0.01-0.15nmol·Ncm-3h-1,qPCR结果表明nrfA的丰度范围为1.08×105-2.51×106拷贝g-1干重。nrfA基因的高通量测序显示,厌氧细菌的相对丰度(平均4.52%),Polyangium(4.09%),铀(1.86%),Geobacter(1.34%),腔隙(1.32%)高。Pearson和RDA相关分析显示nrfA基因丰度与海拔呈正相关,pH值,OC,和沙子浓度。厌氧细菌与储层年龄和DNRA潜力率呈正相关。确定性环境选择过程在DNRA细菌群落的形成中起着至关重要的作用。网络分析显示,优势DNRA属是澜沧江梯级水库沉积物中DNRA微生物群落的关键种群。这项研究表明,DNRA细菌活性和群落结构的变化在很大程度上是由级联水库的建设驱动的,为进一步认识梯级水库生态系统DNRA群落特征提供了新思路。
    Dissimilatory nitrate reduction to ammonium (DNRA) is an important nitrate reduction pathway in freshwater sediments. Many studies have focused on the DNRA process in various natural habitats. However, the joint operation of cascade reservoirs will affect the physical and chemical properties of sediments, which may change the DNRA process and bacterial community pattern in the surface sediments of cascade reservoirs. Our study was the first to investigate the spatiotemporal distribution patterns of potential DNRA rate, nrfA gene abundances, and DNRA bacterial community diversity in surface sediments of the Lancang River cascade reservoirs. The results of slurry incubation experiments combined with the 15N isotope tracer experiment ascertained that the potential rates of DNRA were 0.01-0.15 nmol-N cm-3 h-1, and qPCR results indicated that the abundance range of nrfA was 1.08 × 105-2.51 × 106 copies g-1 dry weight. High throughput sequencing of the nrfA gene revealed that the relative abundance of Anaeromyxobacter (4.52% on average), Polyangium (4.09%), Archangium (1.86%), Geobacter (1.34%), and Lacunisphaera (1.32%) were high. Pearson and RDA correlation analysis exhibited that nrfA gene abundance was positively correlated with altitude, pH, OC, and sand concentration. Anaeromyxobacter was positively correlated with reservoir age and DNRA potential rate. The deterministic environmental selection process plays a crucial role in the formation of the DNRA bacterial community. Network analysis displayed that the dominant DNRA genus was the key population of the DNRA microbial community in the sediments of Lancang River cascade reservoirs. This study reveals that the variation of DNRA bacterial activity and community structure is largely driven by the construction of cascade reservoirs, and provides a new idea for further understanding the characteristics of the DNRA community in the cascade reservoir ecosystem.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    巨藻全生物研究涉及理解宿主之间的相互作用,它的微生物群,和环境。我们分析了细菌-海带相互作用对两个遗传上不同的巨型海带种群的表型反应的影响,大孢子虫(北部和南部),暴露于不同的氮(N)浓度。在不同氮浓度处理的共培养实验中,我们评估了海带生长反应和与N循环相关的三个特定分子标记的变化,在附生细菌(nrfA基因的相对丰度:细胞色素c亚硝酸还原酶)和大型藻类(NR基因的表达:硝酸还原酶;GluSyn基因:谷氨酸合酶)中。两种海带种群对N限制的反应不同,在N限制条件下,Pyrifera-南方孢子体的比生长率(SGR)低于北方种群;当暴露于低氮和高氮浓度时,Pyrifera-北方孢子体的SGR没有显着差异。这对应于pyrifera-北孢子体中更高的GluSyn基因表达以及特定nrfA细菌分类群的共同出现。这些细菌在低氮浓度下可能会增加铵的利用率,允许M.pyrifera-north通过增加GluSyn的表达来优化营养同化。我们得出的结论是,在低氮利用率下,细菌-海带相互作用对提高海带生长速率很重要。尽管这种效应可能受海带种群遗传背景的调节。
    Macroalgal holobiont studies involve understanding interactions between the host, its microbiota, and the environment. We analyzed the effect of bacteria-kelp interactions on phenotypic responses of two genetically distinct populations of giant kelp, Macrocystis pyrifera (north and south), exposed to different nitrogen (N) concentrations. In co-culture experiments with different N concentration treatments, we evaluated kelp growth responses and changes in three specific molecular markers associated with the N cycle, both in epiphytic bacteria (relative abundance of nrfA-gene: cytochrome c nitrite reductase) and macroalgae (expression of NR-gene: nitrate reductase; GluSyn-gene: glutamate synthase). Both kelp populations responded differently to N limitation, with M. pyrifera-south sporophytes having a lower specific growth rate (SGR) under N-limiting conditions than the northern population; M. pyrifera-north sporophytes showed no significant differences in SGR when exposed to low-N and high-N concentrations. This corresponded to a higher GluSyn-gene expression in the M. pyrifera-north sporophytes and the co-occurrence of specific nrfA bacterial taxa. These bacteria may increase ammonium availability under low-N concentrations, allowing M. pyrifera-north to optimize nutrient assimilation by increasing the expression of GluSyn. We conclude that bacteria-kelp interactions are important in enhancing kelp growth rates under low N availability, although this effect may be regulated by the genetic background of kelp populations.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    Dissimilatory nitrate reduction to ammonia (DNRA) process, competing with denitrification and anaerobic ammonia oxidation (anammox) for nitrate, is an important nitrogen retention pathway in the environment. Previous studies on DNRA bacterial diversity and composition focused on the surface sediments in estuaries, but studies on the deep sediments are limited, and the linkage between DNRA community structure and complex estuarine environment remains unclear. In this study, through high-throughput sequencing of nrfA gene followed by high-resolution sample inference, we examined spatially and temporally the composition and diversity of DNRA bacteria along a salinity gradient in five sediment cores of the Pearl River Estuary (PRE). We found a higher diversity and richness of DNRA bacteria in sediments with lower organic carbon, where sea water intersects fresh water. Moreover, the DNRA bacterial communities had the specific spatially distribution coupling with their metabolic difference along the salinity gradient of the Pearl River Estuary, but no obvious difference along the sediment depth. The distribution of DNRA bacteria in the PRE was largely driven by various environmental factors, including salinity, Oxidation-Reduction Potential (ORP), ammonium, nitrate and Corg/NO3-. Furthermore, dominant DNRA bacteria were found to be the key populations of DNRA communities in the PRE sediments by network analysis. Collectively, our results showed that niche difference of DNRA bacteria indeed occurs in the Pearl River Estuary.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号