novel methods

新颖的方法
  • 文章类型: Editorial
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  • 文章类型: Journal Article
    目标:100,000基因组计划(100KGP)诊断了四分之一的受影响参与者,但是26%的诊断不在应用的基因组上;许多是从头变异。在没有基因组的情况下评估双等位基因变体更具挑战性。
    方法:我们试图使用GenePy来识别错过的双等位基因诊断,结合了等位基因频率,合子,和用户定义的有害指标,每个基因生成一个汇总的GenePy评分,每个参与者。我们计算了78,216名100KGP参与者中2862个隐性疾病基因的GenePy得分。对于每个基因,我们对参与者GenePy得分进行排名,并在没有诊断的情况下仔细检查受影响的参与者,其得分在每个基因的前5名中。参与者表型与感兴趣的疾病基因重叠,我们提取了罕见的变体和应用阶段,ClinVar和ACMG分类。
    结果:3184名没有分子诊断的受影响个体的GenePy评分排名前5,682/3184(21%)的表型与排名最高的基因重叠。在122/669(18%)的表型匹配病例(不包括13名退出参与者),我们确定了一个推定的漏诊(所有未确诊的参与者的2.2%).另外334/669(50%)的病例可能有漏诊,但需要功能验证。
    结论:大规模应用GenePy已经确定了456种潜在诊断,证明了新型诊断策略的价值。
    The 100,000 Genomes Project diagnosed a quarter of affected participants, but 26% of diagnoses were not on the applied gene panel(s); with many being de novo variants. Assessing biallelic variants without a gene panel is more challenging.
    We sought to identify missed biallelic diagnoses using GenePy, which incorporates allele frequency, zygosity, and a user-defined deleterious metric, generating an aggregate GenePy score per gene, per participant. We calculated GenePy scores for 2862 recessive disease genes in 78,216 100,000 Genomes Project participants. For each gene, we ranked participant GenePy scores and scrutinized affected participants without a diagnosis, whose scores ranked among the top 5 for each gene. In cases which participant phenotypes overlapped with the disease gene of interest, we extracted rare variants and applied phase, ClinVar, and ACMG classification.
    3184 affected individuals without a molecular diagnosis had a top-5-ranked GenePy score and 682 of 3184 (21%) had phenotypes overlapping with a top-ranking gene. In 122 of 669 (18%) phenotype-matched cases (excluding 13 withdrawn participants), we identified a putative missed diagnosis (2.2% of all undiagnosed participants). A further 334 of 669 (50%) cases have a possible missed diagnosis but require functional validation.
    Applying GenePy at scale has identified 456 potential diagnoses, demonstrating the value of novel diagnostic strategies.
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  • 文章类型: Journal Article
    Betalains是具有强大抗氧化活性的有吸引力的天然色素,主要从根部提取,块茎,叶子,鲜花,某些植物和一些真菌的果实。它们是食品工业中使用的合成染料的可靠替代品,被认为对消费者有毒。此外,有令人信服的证据表明它们对消费者的健康有益。然而,betalains对环境因素高度不稳定,如光,热,氧气,水活动,以及在食品加工过程中可以降解的pH值变化,处理,storage,或交货。因此,新开发的提取方法和微/纳米封装技术目前用于提高提取率,解决他们的不稳定问题,并提高其在食品工业中的应用。本文旨在总结甜菜碱的新的先进提取方法,讨论了最近关于不同封装材料利用的封装技术。Betalains,具有强大抗氧化活性的天然色素,越来越多地从根部提取,块茎,叶子,鲜花,以及某些植物的果实和一些真菌作为食品工业中使用的合成食品染料的安全替代品。然而,它们在食品加工过程中容易降解,storage,交付带来了挑战。提取方法的最新进展(例如,超临界流体,加压液体,超声波和微波辅助,和酶辅助)增强甜菜碱恢复,最小化降解。使用生物聚合物的封装技术,蛋白质,脂质,纳米粒子保护甜菜不受环境因素的影响,延长保质期和控制释放。这些进步提供了改进的提取效率,减少溶剂使用,处理时间更短,增强了稳定性。这些技术在食品工业中的集成为将甜菜碱纳入各种产品提供了机会,包括功能性食品,饮料,和膳食补充剂。通过应对稳定性挑战,这些发展支持创新的生产,富含甜菜碱的健康食品。本文概述了甜菜碱提取和包封的最新进展,突出了它们在食品工业中的潜在应用。
    Betalains are attractive natural pigments with potent antioxidant activity, mainly extracted from the roots, tubers, leaves, flowers, and fruits of certain plants and some fungi. They constitute a reliable alternative to synthetic dyes used in the food industry and are considered toxic for consumers. In addition, there is convincing evidence of their health benefits for consumers. However, betalains are highly unstable to environment factors, such as light, heat, oxygen, water activity, and pH change which can be degraded during food processing, handling, storage, or delivery. Therefore, newly developed extraction methods and micro/nano-encapsulation techniques are currently applied to enhance the extraction yield, solve their instability problems, and improve their application in the food industry. This article aims to summarize the new advanced extraction methods of betalains, discussing the recent encapsulation techniques concerning the different encapsulating materials utilization. Betalains, natural pigments with potent antioxidant activity, are increasingly extracted from the roots, tubers, leaves, flowers, and fruits of certain plants and some fungi as safe alternatives to synthetic food dyes used in the food industry. However, their susceptibility to degradation during food processing, storage, and delivery poses challenges. Recent developments in extraction methods (e.g., supercritical fluid, pressurized liquid, ultrasound- and microwave-assisted, and enzyme-assisted) enhance betalain recovery, minimizing degradation. Encapsulation techniques using biopolymers, proteins, lipids, and nanoparticles protect betalains from environmental factors, extending shelf life and enabling controlled release. These advancements offer improved extraction efficiency, reduced solvent use, shorter processing times, and enhanced stability. Integration of these techniques in the food industry presents opportunities for incorporating betalains into various products, including functional foods, beverages, and dietary supplements. By addressing stability challenges, these developments support the production of innovative, healthier food items enriched with betalains. This article provides an overview of recent advancements in betalain extraction and encapsulation, highlighting their potential applications in the food industry.
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  • 文章类型: Journal Article
    运动想象(MI)-脑计算机接口(BCI)文盲定义,由于与疲劳相关的不同因素,并非所有受试者都能在MI-BCI系统中取得良好的表现,物质消耗,浓度,和使用经验。为了减少缺乏使用BCI系统经验的影响(天真的用户),本文介绍了三种深度学习(DL)方法的实现,并假设与基线方法相比,BCI系统的性能可以提高。这里提出的方法基于卷积神经网络(CNN),长短期记忆(LSTM)/双向长短期记忆(BiLSTM),CNN和LSTM的组合用于在25名幼稚BCI用户的数据集上进行上肢MI信号鉴别。将结果与基于公共空间模式(CSP)的三种广泛使用的基线方法进行比较,滤波器组公共空间模式(FBCSP),和滤波器组公共空间光谱模式(FBCSSP),在不同的时间窗口配置中。作为结果,基于LSTM-BiLSTM的方法提供了最佳性能,根据准确性的评估指标,F分数,回想一下,特异性,Precision,ITR,使用1.5s的时间窗口,平均性能为80%(最大95%),ITR为10位/分钟。与基线方法相比,DL方法显着增加了32%(p<0.05)。因此,根据这项研究的结果,预计会增加可控性,可用性,以及在幼稚的BCI用户中使用机器人设备的可靠性。
    Motor Imagery (MI)-Brain Computer-Interfaces (BCI) illiteracy defines that not all subjects can achieve a good performance in MI-BCI systems due to different factors related to the fatigue, substance consumption, concentration, and experience in the use. To reduce the effects of lack of experience in the use of BCI systems (naïve users), this paper presents the implementation of three Deep Learning (DL) methods with the hypothesis that the performance of BCI systems could be improved compared with baseline methods in the evaluation of naïve BCI users. The methods proposed here are based on Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM)/Bidirectional Long Short-Term Memory (BiLSTM), and a combination of CNN and LSTM used for upper limb MI signal discrimination on a dataset of 25 naïve BCI users. The results were compared with three widely used baseline methods based on the Common Spatial Pattern (CSP), Filter Bank Common Spatial Pattern (FBCSP), and Filter Bank Common Spatial-Spectral Pattern (FBCSSP), in different temporal window configurations. As results, the LSTM-BiLSTM-based approach presented the best performance, according to the evaluation metrics of Accuracy, F-score, Recall, Specificity, Precision, and ITR, with a mean performance of 80% (maximum 95%) and ITR of 10 bits/min using a temporal window of 1.5 s. The DL Methods represent a significant increase of 32% compared with the baseline methods (p< 0.05). Thus, with the outcomes of this study, it is expected to increase the controllability, usability, and reliability of the use of robotic devices in naïve BCI users.
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  • 文章类型: Journal Article
    背景:马拉松中年爱好者的心血管安全性尚不清楚。我们先前假设心肌肌钙蛋白I(cTnI)和N末端B型利钠肽前体(NT-proBNP)的瞬时释放,除了对运动的急性炎症反应,可能是原因。
    目的:为了评估马拉松对炎症生物标志物的影响,以及它对心血管功能的影响。
    方法:33名年龄≥50岁(平均年龄:57±7岁)的健康男性业余跑步者被纳入研究。在马拉松比赛前采集静脉血样本,比赛刚结束,以及马拉松后2-4天和7天。采用新型单分子计数(SMC)技术,我们测量了白细胞介素-6(IL-6)和肿瘤坏死因子-α(TNF-α)的血浆浓度。使用经认证的血液学分析仪测量白细胞(WBC)计数。结果与先前对心血管压力和内皮功能生物标志物的分析有关。经胸超声心动图(TTE)和心脏磁共振(CMR)用于确定心肌功能。
    结果:我们观察到所有研究的生物标志物在比赛后急剧上升,随后在2-4天后恢复正常,并在比赛后7天保持在正常范围内。我们发现炎症和心血管应激生物标志物之间没有相关性。经胸超声心动图和CMR未显示缺血性或炎性心肌损害。
    结论:马拉松跑步与炎症和心血管应激生物标志物的急剧和显著升高相关。我们发现免疫激活和心脏生物标志物释放之间没有联系。心血管成像显示没有因缺血或炎症引起的心肌损伤。
    BACKGROUND: Cardiovascular safety of marathon running middle-aged amateurs remains unclear. We previously hypothesized that transient release of cardiac troponin I (cTnI) and N-terminal pro-B-type natriuretic peptide (NT-proBNP), in addition to an acute inflammatory response to exercise, may be the cause.
    OBJECTIVE: To evaluate the effects of running a marathon on inflammatory biomarkers, and its impact on cardiovascular function.
    METHODS: Thirty-three healthy male amateur runners aged ≥50 (mean age: 57 ±7 years) were enrolled in the study. Venous blood samples were obtained before the marathon, just after the race, and 2-4 days and 7 days after the marathon. Using novel single molecule counting (SMC) technology, we measured plasma concentrations of interleukin-6 (IL-6) and tumor necrosis factor alpha (TNF-α). White blood cell (WBC) count was measured using a certified hematology analyzer. The results were related to previous analyses on cardiovascular stress and endothelial function biomarkers. Transthoracic echocardiography (TTE) and cardiac magnetic resonance (CMR) were used to determine myocardial function.
    RESULTS: We observed a sharp rise of all studied biomarkers after the race, which subsequently normalized after 2-4 days and stayed within the normal range 7 days after the race. We found no correlation between inflammatory and cardiovascular stress biomarkers. Transthoracic echocardiography and CMR did not show ischemic or inflammatory myocardial damage.
    CONCLUSIONS: Marathon running is associated with a sharp and significant rise in inflammatory and cardiovascular stress biomarkers. We found no connection between immune activation and cardiac biomarker release. Cardiovascular imaging showed no myocardial damage due to ischemia or inflammation.
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  • 文章类型: Journal Article
    α-pine烯在化妆品中的广泛使用,和医学,特别是它的抗氧化剂/抗菌,和抗癌特性,也可以作为调味剂,使其成为多功能产品。α-pine烯(两种pine烯异构体之一)是自然界中最丰富的萜烯。从植物中提取α-pine烯时,在较小程度上,水果,鉴于它的纯度是必不可少的,纯化方法也应使用本研究中所述。此外,已经尝试描述α-pine烯的提取技术,通过常规和新颖的方法进行。传统方法(如加氢蒸馏或溶剂萃取)的一些缺点是耗时,每批产能低,劳动密集型和训练有素的操作员的要求。大多数新颖的方法,如超临界流体萃取和微波辅助萃取,可以减少提取时间,成本,和能量与传统方法相比,and,事实上,这些方法对α-pine烯的提取和保存效率均高于常规方法。尽管上述提取方法是有效的,它们仍然需要相当长的提取时间。事实上,绿色无溶剂超声-微波辅助提取等先进方法比微波辅助提取和超声辅助提取更有效,因为这些方法对α-pine烯的提取效率和分离效率更高;此外,无溶剂消耗和最大提取效率是这些技术的一些关键优势。然而,一些新方法的应用,如超声辅助提取,由于其复杂的设计数据,在行业规模上仍然存在问题。
    Extensive use of α-pinene in cosmetics, and medicine, especially for its antioxidant/antibacterial, and anti-cancer properties, and also as a flavoring agent, has made it a versatile product. α-Pinene (one of the two pinene isomers) is the most abundant terpene in nature. When extracting α-pinene from plants and, to a lesser extent, fruits, given that its purity is essential, purification methods should also be used as described in this study. Also, an attempt has been made to describe the extraction techniques of α-pinene, carried out by conventional and novel methods. Some disadvantages of conventional methods (such as hydrodistillation or solvent extraction) are being time consuming, low capacity per batch and being labor intensive and the requirement of trained operators. Most novel methods, such as supercritical fluid extraction and microwave-assisted extraction, can reduce the extraction time, cost, and energy compared to conventional methods, and, in fact, the extraction and preservation efficiency of α-pinene in these methods is higher than conventional methods. Although the above-mentioned extraction methods are effective, they still require rather long extraction times. In fact, advanced methods such as green and solvent-free ultrasonic-microwave-assisted extraction are much more efficient than microwave-assisted extraction and ultrasound-assisted extraction because the extraction efficiency and separation of α-pinene in these methods are higher; furthermore, no solvent consumption and maximum extraction efficiency are some crucial advantages of these techniques. However, the application of some novel methods, such as ultrasound-assisted extraction, in industry scale is still problematic because of their intricate design data.
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  • 文章类型: Journal Article
    确保种族和少数族裔妇女参与乳腺癌研究对于解决目前有据可查的癌症发病率差异非常重要。诊断阶段,和死亡率。这项研究使用了一种新颖的互动焦点小组方法来确定创新的沟通策略,以招募来自两个少数群体的女性-拉丁裔和亚裔美国人-进入Komen组织银行,一个特定的乳腺癌生物样本库临床试验。通过使用视觉互动工具来促进小组讨论和自我反思的活动,作者研究了亚裔美国妇女(N=17)和拉丁裔妇女(N=14)捐赠健康乳腺组织的观点和动机。调查结果包括三个主题,虽然这两个群体都很常见,在表达方式上是独一无二的:缺乏关于乳腺癌风险和参与临床研究的知识,BC风险思维中的文化影响,以及利他主义与乳腺癌的个人联系。更重要的是,这项研究阐明了使用创新方法鼓励更深层次的重要性,在代表性不足的人群中,更开明的参与可能不会出现在传统的焦点小组形式中。这项研究的结果将为未来的健康交流工作提供信息,以招募来自这些群体的女性进入KomenTissueBank等临床研究项目。
    Ensuring that racial and ethnic minority women are involved in breast cancer research is important to address well-documented current disparities in cancer incidence, stages of diagnosis, and mortality rates. This study used a novel interactive focus group method to identify innovative communication strategies for recruiting women from two minority groups-Latinas and Asian Americans-into the Komen Tissue Bank, a specific breast cancer biobank clinical trial. Through activities that employed visual interactive tools to facilitate group discussion and self-reflection, the authors examined perspectives and motivations for Asian American women (N = 17) and Latinas (N = 14) toward donating their healthy breast tissue. Findings included three themes that, while common to both groups, were unique in how they were expressed: lack of knowledge concerning breast cancer risks and participation in clinical research, cultural influences in BC risk thinking, and how altruism relates to perceived personal connection to breast cancer. More significantly, this study illuminated the importance of using innovative methods to encourage deeper, more enlightened participation among underrepresented populations that may not arise in a traditional focus group format. The findings from this study will inform future health communication efforts to recruit women from these groups into clinical research projects like the Komen Tissue Bank.
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  • 文章类型: Journal Article
    自从COVID-19疫情持续上升和蔓延以来,几篇关于COVID-19的原创文章和评论文章开始出现在文献中。评论文章主要关注大流行的现状以及电晕诊断和治疗过程的现状。由于目前使用的方法的一些缺点,改进新型有前景的冠状病毒诊断和治疗方法是非常重要的问题。在这次审查中,在简要讨论了当前诊断和治疗方法的现状之后,我们向科学界介绍,诊断和治疗COVID-19的新方法。与其他新方法一样,首先,质谱和光谱方法如紫外/可见光的诊断潜力,红外线,以及拉曼光谱与化学计量学相结合将在相关文献的基础上讨论冠状病毒感染的样品。在振动光谱学研究中,由于数据的复杂性,多变量分析方法也适用于数据。本综述还包括可用于从数据中提取有用信息以进行诊断和表征的多变量分析工具的应用。综述的方法包括层次聚类分析,主成分分析,线性和二次判别分析,支持向量机算法,神经网络的一种形式即深度学习方法。第二,将讨论新的治疗方法,如光动力疗法和纳米颗粒在冠状病毒治疗中的应用。最后,将讨论COVID-19新型有前途的诊断和治疗方法相对于标准方法的优势。本文的主要目的之一是鼓励科学界探索这种新型工具在冠状病毒表征中的潜力,诊断,和治疗。
    Since COVID-19 pandemic has been continuously rising and spreading, several original contributions and review articles on COVID-19 started to appear in the literature. The review articles are mainly focus on the current status of the pandemic along with current status of the corona diagnosis and treatment process. Due to some disadvantages of the currently used methods, the improvement on the novel promising diagnosis and treatment methods of corona virus is very important issue. In this review, after briefly discussing the status of current diagnosis and treatment methods, we present to the scientific community, novel promising methods in the diagnosis and treatment of COVID-19. As with other novel approaches, first, the diagnosis potential of mass spectroscopy and optical spectroscopic methods such as UV/visible, infrared, and Raman spectroscopy coupled with chemometrics will be discussed for the corona virus infected samples based on the relevant literature. In vibrational spectroscopy studies, due to complexity of the data, multivariate analysis methods are also applied to data. The application of multivariate analysis tools that can be used to extract useful information from the data for diagnostic and characterisation purposes is also included in this review. The reviewed methods include hierarchical cluster analysis, principal component analysis, linear and quadratic discriminant analysis, support vector machine algorithm, and one form of neural networks namely deep learning method. Second, novel treatment methods such as photodynamic therapy and the use of nanoparticles in the in-corona virus therapy will be discussed. Finally, the advantages of novel promising diagnosis and treatment methods in COVID-19, over standard methods will be discussed. One of the main aims of this paper is to encourage the scientific community to explore the potential of this novel tools for their use in corona virus characterization, diagnosis, and treatment.
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  • 文章类型: Journal Article
    Neck of femur fractures have often been termed as \"The Unsolved Fractures\", since they have a guarded outcome even after improved understanding of biomechanics and biology of this area. Gap-nonunion is one such dreaded complication of this fracture, especially in younger (<60 years) population, where arthroplasty may not be the best go-to option. We have earlier described \"The AIIMS BOX\" technique to manage such cases of gap non-union in neglected neck femur fractures [1]. Here we intend to describe a more successful modification of this technique. We operated 7 cases of gap non-union with our new \"Cage in Box\" strategy and followed these cases for 5 years. 6 patients from this group achieved excellent to good outcomes and only 1 reported a poor outcome. All the patients, except the one with poor outcome, could walk without aid and do activities of daily living independently. 3 patients developed AVN but had no evidence of collapse. 3 patients also developed Coxa vara, but it was significant only in one case. 6/7 patients were able to squat. We describe this method in detail and feel this can be a viable option in the armamentarium of orthopedic surgeons, along with valgus osteotomy, vascularized and non-vascularized fibular strut graft as well as Meyer\'s Graft, to help them solve this unsolved fracture.
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  • 文章类型: Journal Article
    The transient nature of the internal pore structure of particulate wall flow filters, caused by the continuous deposition of particulate matter, makes studying their flow and filtration characteristics challenging. In this article we present a new methodology and first experimental demonstration of time resolved in-situ synchrotron micro X-ray computed tomography (micro-CT) to study aerosol filtration. We directly imaged in 4D (3D plus time) pore scale deposits of TiO2 nanoparticles (nominal mean primary diameter of 25 nm) with a pixel resolution of 1.6 μm. We obtained 3D tomograms at a rate of ∼1 per minute. The combined spatial and temporal resolution allows us to observe pore blocking and filling phenomena as they occur in the filter\'s pore space. We quantified the reduction in filter porosity over time, from an initial porosity of 0.60 to a final porosity of 0.56 after 20 min. Furthermore, the penetration depth of particulate deposits and filtration rate was quantified. This novel image-based method offers valuable and statistically relevant insights into how the pore structure and function evolves during particulate filtration. Our data set will allow validation of simulations of automotive wall flow filters. Evolutions of this experimental design have potential for the study of a wide range of dry aerosol filters and could be directly applied to catalysed automotive wall flow filters.
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