nonequilibrium processes

非平衡过程
  • 文章类型: Journal Article
    目标:由化学燃料驱动的水凝胶执行器在自主软机器人技术中至关重要。然而,化学燃料引起的化学废物积累阻碍了可编程和可重复使用的水凝胶致动系统的开发。我们提出了离子燃料驱动的软机器人的概念,该机器人由可编程的盐响应执行器构造而成,并使用无浪费的离子燃料。
    方法:这里,软水凝胶致动器是通过协调Janus双层水凝胶的膨胀和收缩能力而开发的。使用可分解且易于去除的离子燃料为致动器供电。使用溶胀测试来评估水凝胶的可变形性。进行拉伸测试以研究水凝胶的模量。光学显微镜和扫描电子显微镜证明了由来自两个水凝胶层双层的互穿聚合物链组成的键合界面。溶液的离子电导率由电导计测定。此外,设计和制造了一系列具有各种形状和非对称结构的仿生软机器人,以执行复杂的功能。
    结果:由离子燃料供电的可编程执行器表现出可调节的弯曲方向,振幅,和持续时间,以及通过补充燃料而实现的一致循环致动,而没有明显的性能损失。设计了许多逼真的可编程软机器人系统,指示时空可控功能。
    OBJECTIVE: Hydrogel actuators powered by chemical fuels are pivotal in autonomous soft robotics. Nevertheless, chemical waste accumulation caused by chemical fuels hampers the development of programmable and reusable hydrogel actuating systems. We propose the concept of ionic fuel-powered soft robotics which are constructed by programmable salt-responsive actuators and use waste-free ionic fuels.
    METHODS: Herein, soft hydrogel actuators were developed by orchestrating the Janus bilayer hydrogels\' capacity for swelling and shrinking. Decomposable and easily removable ionic fuels were applied to power the actuators. Swelling tests were used to evaluate the deformability of the hydrogels. Tensile tests were performed to investigate the modulus of the hydrogels. The bonded interface composed of the interpenetrating polymer chains from both hydrogel layers bilayer was evidenced by the optical microscopy and scanning electron microscopy. The ionic conductivities of solutions were determined by a conductivity meter. Furthermore, a range of biomimetic soft robots with various shapes and asymmetrical structures have been designed and fabricated to execute complex functions.
    RESULTS: The programmable actuators powered by ionic fuel exhibit adjustable bending orientations, amplitudes, and durations, along with consistent cyclic actuations enabled by replenishment of the fuel without noticeable loss in performance. Many life-like programmable soft robotic systems were designed, indicating spatiotemporally controllable functions.
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  • 文章类型: Journal Article
    基于分子设计的宏观自推进振荡运动的出现引起了与生物体中自治系统有关的持续关注。在这里,制备了一系列具有各种酰亚胺侧链的二酰亚胺(PDIs),以探索分子设计和排列对空气-水界面自推进运动的影响。当放在含有还原剂的水溶液上时,中性PDI的固体盘被还原形成水溶性,表面活性PDI阴离子物种,在圆盘附近引起表面张力梯度以进行自推进运动。我们发现,可以通过还原剂浓度和酰亚胺侧链的结构控制PDI双阴离子物种的供应速率来引起厘米级的振荡运动。此外,我们发现,自推进运动的开始和速度可以通过水面PDI的结晶度来改变。这种使用π共轭分子及其自组装的设计原理可以推进自推进,由化学能驱动的非平衡系统。
    The emergence of macroscopic self-propelled oscillatory motion based on molecular design has attracted continual attention in relation to autonomous systems in living organisms. Herein, a series of perylenediimides (PDIs) with various imide side chains was prepared to explore the impact of molecular design and alignment on the self-propelled motion at the air-water interface. When placed on an aqueous solution containing a reductant, a solid disk of neutral PDI was reduced to form the water soluble, surface-active PDI dianion species, which induces a surface tension gradient in the vicinity of the disk for self-propelled motion. We found that centimeter-scale oscillatory motion could be elicited by controlling the supply rate of PDI dianion species through the reductant concentration and the structure of imide side chains. Furthermore, we found that the onset and speed of the self-propelled motion could be changed by the crystallinity of PDI at the water surface. This design principle using π-conjugated molecules and their self-assemblies could advance self-propelled, non-equilibrium systems powered by chemical energy.
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  • 文章类型: Journal Article
    当多于一个可逆反应开始起作用时,产生化合物的多个动态库。通常,使用两个或多个正交可逆反应,导致不共享构建块的非通信动态库。只报道了几个交流库的例子,在所有这些情况下,积木从一个图书馆可逆地交换到另一个图书馆,构成一个反平行的动态共价系统。在这里,我们报告说,通过不可逆的过程,两个不同的动态库之间的通信也是可能的。的确,烷基胺取消了四嗪亲核取代的动力学机制,产生动力学惰性化合物。有趣的是,这种胺可以是另一个动态库的一部分,亚胺-胺交换。因此,两个库通过不可逆的过程相互连接,从而产生包含两个库的部分的动力学惰性结构,导致复杂性的崩溃。此外,可以发展潜在的不可逆转的相互交流。以这样的方式,具有特定主客体和荧光性质的稳定分子体系,当施加正确的刺激时,可能会不可逆转地改变,引发了原有的超分子和发光特性的取消和新的发光特性的出现。
    Multiple dynamic libraries of compounds are generated when more than one reversible reaction comes into play. Commonly, two or more orthogonal reversible reactions are used, leading to non-communicating dynamic libraries which share no building blocks. Only a few examples of communicating libraries have been reported, and in all those cases, building blocks are reversibly exchanged from one library to the other, constituting an antiparallel dynamic covalent system. Herein we report that communication between two different dynamic libraries through an irreversible process is also possible. Indeed, alkyl amines cancel the dynamic regime on the nucleophilic substitution of tetrazines, generating kinetically inert compounds. Interestingly, such amine can be part of another dynamic library, an imine-amine exchange. Thus, both libraries are interconnected with each other by an irreversible process which leads to kinetically inert structures that contain parts from both libraries, causing a collapse of the complexity. Additionally, a latent irreversible intercommunication could be developed. In such a way, a stable molecular system with specific host-guest and fluorescence properties, could be irreversibly transformed when the right stimulus was applied, triggering the cancellation of the original supramolecular and luminescent properties and the emergence of new ones.
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  • 文章类型: Journal Article
    近年来,棘轮机制已经改变了对随机分子系统的理解和设计-生物,化学和物理-摆脱了在1990年代和2000年代初期主导分子动力学思想的机械宏观类比(例如活塞,弹簧,etc),支持当今分子科学失衡研究的更多与规模相关的概念。Ratcheting已将分子纳米技术确立为能量转导和代谢的研究前沿,并实现了生物分子机械的逆向工程,提供有关分子“行走”和基于轨道的合成器如何操作的见解,化学反应的加速如何使能量被催化剂转化,以及动态(超)分子系统如何摆脱平衡。分子棘轮机制在生物学中的认识,以及他们在合成系统中的发明,在超分子化学等不同领域被证明具有重要意义,系统化学,动态共价化学,DNA纳米技术,聚合物和材料科学,分子生物学,多相催化,endergonic合成,和化学科学的许多其他分支。简单地说,棘轮机构给化学方向。动力学不对称,由棘轮的结果量化,是结构不对称性(即手性)的动态对应物。鉴于棘轮机制的无处不在,这当然也同样重要。
    Over the last two decades ratchet mechanisms have transformed the understanding and design of stochastic molecular systems-biological, chemical and physical-in a move away from the mechanical macroscopic analogies that dominated thinking regarding molecular dynamics in the 1990s and early 2000s (e.g. pistons, springs, etc), to the more scale-relevant concepts that underpin out-of-equilibrium research in the molecular sciences today. Ratcheting has established molecular nanotechnology as a research frontier for energy transduction and metabolism, and has enabled the reverse engineering of biomolecular machinery, delivering insights into how molecules \'walk\' and track-based synthesisers operate, how the acceleration of chemical reactions enables energy to be transduced by catalysts (both motor proteins and synthetic catalysts), and how dynamic systems can be driven away from equilibrium through catalysis. The recognition of molecular ratchet mechanisms in biology, and their invention in synthetic systems, is proving significant in areas as diverse as supramolecular chemistry, systems chemistry, dynamic covalent chemistry, DNA nanotechnology, polymer and materials science, molecular biology, heterogeneous catalysis, endergonic synthesis, the origin of life, and many other branches of chemical science. Put simply, ratchet mechanisms give chemistry direction. Kinetic asymmetry, the key feature of ratcheting, is the dynamic counterpart of structural asymmetry (i.e. chirality). Given the ubiquity of ratchet mechanisms in endergonic chemical processes in biology, and their significance for behaviour and function from systems to synthesis, it is surely just as fundamentally important. This Review charts the recognition, invention and development of molecular ratchets, focussing particularly on the role for which they were originally envisaged in chemistry, as design elements for molecular machinery. Different kinetically asymmetric systems are compared, and the consequences of their dynamic behaviour discussed. These archetypal examples demonstrate how chemical systems can be driven inexorably away from equilibrium, rather than relax towards it.
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  • 文章类型: Journal Article
    从核酸链形成和解离双链体或更高级结构是在生物化学和纳米技术中具有广泛应用的基本过程。这里,我们介绍了一个简单的实验系统-扩散泳阱-用于使用电解质梯度作为驱动力的核酸结构的非平衡自组装。DNA链可以通过由电解质梯度产生的电场引起的扩散泳捕集力浓缩至百倍。我们为该领域提供了一个简单的方程式,以指导选择适当的捕获电解质。用羧化二氧化硅颗粒进行的实验表明,扩散泳力是远距离的,延伸超过几百微米。作为一个应用程序,我们探索了陷阱中分支DNA纳米结构的可逆自组装成宏观凝胶。结构在电解质梯度的存在下组装,并在拆卸后拆卸,表示对宏观非平衡状态的原型自适应响应。
    The formation and dissociation of duplexes or higher order structures from nucleic acid strands is a fundamental process with widespread applications in biochemistry and nanotechnology. Here, we introduce a simple experimental system-a diffusiophoretic trap-for the non-equilibrium self-assembly of nucleic acid structures that uses an electrolyte gradient as the driving force. DNA strands can be concentrated up to hundredfold by a diffusiophoretic trapping force that is caused by the electric field generated by the electrolyte gradient. We present a simple equation for the field to guide selection of appropriate trapping electrolytes. Experiments with carboxylated silica particles demonstrate that the diffusiophoretic force is long-ranged, extending over hundreds of micrometers. As an application, we explore the reversible self-assembly of branched DNA nanostructures in the trap into a macroscopic gel. The structures assemble in the presence of an electrolyte gradient, and disassemble upon its removal, representing a prototypical adaptive response to a macroscopic non-equilibrium state.
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  • 文章类型: Journal Article
    光响应行为的实现是原始细胞工程的重要目标,以允许控制基本的原始细胞过程,例如通过扩散化学信号进行通信,轻弹开关时,形状会发生变化,甚至是运动性。作为朝着这个宏伟目标迈出的一步,在这里,我们描述了一种新型聚(乙二醇)基交联剂的合成,对亲核试剂有反应性,有效地降解与紫外光(405nm)。我们证明了其用于制造能够光诱导分解的第一个原始细胞膜的用途,用于原始细胞模式的光生成,并用于调节原细胞膜的通透性。总的来说,我们的结果不仅为空间组织工程开辟了新的途径,原始细胞的通信网络,以及用于信息存储和发布的微分区系统,而且对药物递送和软材料化学等其他研究领域也有重要意义。
    The achievement of light-responsive behaviours is an important target for protocell engineering to allow control of fundamental protocellular processes such as communication via diffusible chemical signals, shape changes or even motility at the flick of a switch. As a step towards this ambitious goal, here we describe the synthesis of a novel poly(ethylene glycol)-based crosslinker, reactive towards nucleophiles, that effectively degrades with UV light (405 nm). We demonstrate its utility for the fabrication of the first protocell membranes capable of light-induced disassembly, for the photo-generation of patterns of protocells, and for the modulation of protocell membrane permeability. Overall, our results not only open up new avenues towards the engineering of spatially organised, communicating networks of protocells, and of micro-compartmentalised systems for information storage and release, but also have important implications for other research fields such as drug delivery and soft materials chemistry.
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  • 文章类型: Journal Article
    到目前为止开发的非平衡组装系统依赖于化学燃料来驱动可编程的pH循环,氧化还原反应,和亚稳态键的形成。然而,这些方法通常会导致化学废物的不必要积累。在这里,我们提出了一种实现宏观水凝胶的循环和无废物非平衡组装和拆卸的新策略,利用离子强度介导的方法。我们的策略涉及使用碳酸铵作为化学燃料,通过离子强度控制的电荷筛选和水凝胶弹性变化来暂时调节带相反电荷的水凝胶之间的吸引力。这种化学燃料有效地调解组装/拆卸过程,并防止废物积聚,因为碳酸铵可以完全分解成挥发性的化学废物。由于自间隙机制,可以在没有明显阻尼的情况下实现循环和可逆的组装过程,只要反复供应化学燃料。这一概念有望创造宏观和微观非平衡系统和自适应材料。
    Nonequilibrium assembling systems developed so far have relied on chemical fuels to drive the programmable pH cycles, redox reactions, and metastable bond formations. However, these methods often result in the unwanted accumulation of chemical waste. Herein, we present a novel strategy for achieving cyclic and waste-free nonequilibrium assembly and disassembly of macroscopic hydrogels, utilizing an ionic strength-mediated approach. Our strategy involves using ammonium carbonate as a chemical fuel to temporally regulate the attractions between oppositely charged hydrogels via ionic strength-controlled charge screening and hydrogel elasticity changes. This chemical fuel effectively mediates the assembly/disassembly processes and prevents waste accumulation, as ammonium carbonate can completely decompose into volatile chemical waste. The cyclic and reversible assembly process can be achieved without significant damping due to the self-clearance mechanism, as long as the chemical fuel is repeatedly supplied. This concept holds promise for creating macroscopic and microscopic nonequilibrium systems and self-adaptive materials.
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  • 文章类型: Journal Article
    耗散化学系统具有在合成物质中实现类似生命行为的潜力,比如自组织,运动性,以及不同状态之间的动态切换。这里,通过在空气-水界面处互连的源和排水液滴证明了不平衡的自组织,由于水解反应而显示出动态行为,该水解反应在排水液滴周围产生浓度梯度。该浓度梯度干扰从源液滴生长的自组装两亲物丝的粘附。化学梯度维持排水液滴的独特轨道,建议通过将细丝选择性粘附到移动液滴的前部来驱动,而从后面接近的细丝在与液滴轨迹中的水解产物接触时不稳定。在重排网络中的通信液滴之间的化学信号传递中,可以预见潜在的应用。和化学反应的实施,以驱动复杂的定位例程在类似生活的系统。
    Dissipative chemical systems hold the potential to enable life-like behavior in synthetic matter, such as self-organization, motility, and dynamic switching between different states. Here, out-of-equilibrium self-organization is demonstrated by interconnected source and drain droplets at an air-water interface, which display dynamic behavior due to a hydrolysis reaction that generates a concentration gradient around the drain droplets. This concentration gradient interferes with the adhesion of self-assembled amphiphile filaments that grow from a source droplet. The chemical gradient sustains a unique orbiting of the drain droplet, which is proposed to be driven by the selective adhesion of the filaments to the front of the moving droplet, while filaments approaching from behind are destabilized upon contact with the hydrolysis product in the trail of the droplet. Potential applications are foreseen in the transfer of chemical signals amongst communicating droplets in rearranging networks, and the implementation of chemical reactions to drive complex positioning routines in life-like systems.
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  • 文章类型: Journal Article
    大分子化合物中超快电子转移(ET)反应的许多特定特征可归因于分子内振动自由度和环境的非平衡构型。在光诱导ET中,非平衡核构型通常在光学激发阶段产生,但它们也可能是电子隧穿本身的结果,即,大分子内电荷的快速重新分布。超快ET的一致理论描述需要明确考虑核子系统,包括它在电子跃迁之间的演化。在本文中,研究了多时间尺度核重组对大分子化合物中ET跃迁的影响,并建立了具有多组分弛豫函数的非德拜极地环境中超快ET的一般理论。特别注意设计非平衡核构型的多维空间,以及构造ET态的非绝热自由能表面。个体ET转换的重组能量,ET态的平衡能量,环境的松弛特性作为理论的输入数据。讨论了系统-环境相互作用对ET动力学的影响,并分析了提高大分子化合物中电荷分离效率的机理。
    Many specific features of ultrafast electron transfer (ET) reactions in macromolecular compounds can be attributed to nonequilibrium configurations of intramolecular vibrational degrees of freedom and the environment. In photoinduced ET, nonequilibrium nuclear configurations are often produced at the stage of optical excitation, but they can also be the result of electron tunneling itself, i.e., fast redistribution of charges within the macromolecule. A consistent theoretical description of ultrafast ET requires an explicit consideration of the nuclear subsystem, including its evolution between electron jumps. In this paper, the effect of the multi-timescale nuclear reorganization on ET transitions in macromolecular compounds is studied, and a general theory of ultrafast ET in non-Debye polar environments with a multi-component relaxation function is developed. Particular attention is paid to designing the multidimensional space of nonequilibrium nuclear configurations, as well as constructing the diabatic free energy surfaces for the ET states. The reorganization energies of individual ET transitions, the equilibrium energies of ET states, and the relaxation properties of the environment are used as input data for the theory. The effect of the system-environment interaction on the ET kinetics is discussed, and mechanisms for enhancing the efficiency of charge separation in macromolecular compounds are analyzed.
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  • 文章类型: Journal Article
    大自然通过交叉调节连接多个燃料驱动的化学/酶促反应网络(CRN/ERN),以分层控制生物功能,从而在复杂的感官环境中进行量身定制的适应。在这里,我们介绍了由串联RNA转录调节因子调节的两个燃料驱动的基于DNA的ERN之间的通讯和交叉调节的一个简单例子.ERN1(“发送方”)设计用于T7RNA聚合酶的燃料驱动启动子形成,激活RNA转录。所产生的RNA可以通过立足点介导的链置换使ERN2(“受体”)中的DNA失活或激活,导致两个ERN之间的通信。来自ERN1的RNA可以抑制或促进ERN2的燃料驱动状态;ERN2反过来反馈以调节ERN1的寿命。此外,RNA酶H的掺入允许RNA降解并能够自主回收ERN2。我们认为,多个CRN/ERN的串联为系统化学和合成生物学中更精细的自主调节机制的设计提供了基础。
    Nature connects multiple fuel-driven chemical/enzymatic reaction networks (CRNs/ERNs) via cross-regulation to hierarchically control biofunctions for a tailored adaption in complex sensory landscapes. Herein, we introduce a facile example of communication and cross-regulation among two fuel-driven DNA-based ERNs regulated by a concatenated RNA transcription regulator. ERN1 (\"sender\") is designed for the fuel-driven promoter formation for T7 RNA polymerase, which activates RNA transcription. The produced RNA can deactivate or activate DNA in ERN2 (\"receiver\") by toehold-mediated strand displacement, leading to a communication between two ERNs. The RNA from ERN1 can repress or promote the fuel-driven state of ERN2; ERN2 in turn feedbacks to regulate the lifetime of ERN1. Furthermore, the incorporation of RNase H allows for RNA degradation and enables the autonomous recovery of ERN2. We believe that concatenation of multiple CRNs/ERNs provides a basis for the design of more elaborate autonomous regulatory mechanisms in systems chemistry and synthetic biology.
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