nocardia

诺卡氏菌
  • 文章类型: Journal Article
    诺卡氏菌exalbida,一种不常见的诺卡氏菌,于2006年首次确定。我们在此报告一名70岁的男性患者,在活体肝移植后由N.exalbida引起的肺诺卡病。我们还回顾了以前报道的11例外黄曲霉感染病例。据我们所知,没有关于移植后N.exalbida感染引起的诺卡失的病例报告,从而突出了确定细菌种类对于成功管理感染的重要性。
    Nocardia exalbida, an uncommon Nocardia, was first identified in 2006. We herein report a 70-year-old man with pulmonary nocardiosis caused by N. exalbida after living-donor liver transplantation. We also review 11 previously reported cases of N. exalbida infections. To our knowledge, there are no case reports available on nocardiosis consequent to N. exalbida infection following transplantation, thus highlighting the importance of identifying bacterial species for the successful management of infection.
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  • 文章类型: Case Reports
    诺卡氏菌角膜炎主要见于酒精中毒患者,营养不良,或艾滋病毒。它的慢性起伏不定的过程使其难以诊断。一名53岁的男性在过去3周内出现右眼疼痛和发红。角膜有中央旁溃疡,基质浸润和多个卫星病变,表现为花环状,提示诺卡氏菌。角膜刮擦后,强化阿米卡星,莫西沙星,开始截瘫。革兰氏染色显示丝状,分支革兰氏阳性细菌和耐酸的Ziehl-Neelsen染色证实了我们的临床诊断。溃疡在6周内完全消退。因此,较高的临床怀疑指数,并得到微生物确认的进一步支持,有助于权宜之计,确保成功的结果。
    Nocardia keratitis is mostly seen in patients with alcoholism, malnutrition, or HIV. Its chronic waxing-and-waning course makes it difficult to diagnose. A 53-year-old male presented with pain and redness in his right eye for the past 3 weeks. The cornea had paracentral ulcer with stromal infiltrates and multiple satellite lesions giving wreath-like appearance suggestive of Nocardia. After corneal scraping, fortified amikacin, moxifloxacin, and cycloplegics were started. Gram stain revealed filamentous, branching Gram-positive bacteria and acid-fast on Ziehl-Neelsen stain confirming our clinical diagnosis. Ulcer completely resolved over 6 weeks. Thus, a high index of clinical suspicion which was further backed by microbiological confirmation aided in expedient management ensuring a successful outcome.
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  • 文章类型: Case Reports
    背景:诺卡氏菌病是由诺卡氏菌属的需氧革兰氏阳性菌引起的一种罕见感染。在免疫抑制患者中,诺卡氏菌引起的感染很常见。人类免疫缺陷病毒感染引起的免疫系统减弱,糖尿病,癌症,和其他疾病,如慢性肺病,肾功能衰竭,etc,是诺卡心症的主要危险因素。据报道,中枢神经系统(CNS)诺卡心症占所有疾病的约2%,并在15%至50%的全身性感染患者中出现。我们病例中的患者患有由白质诺卡氏菌感染引起的孤立的中枢神经系统诺卡氏菌病,一种罕见的重新分类的中枢神经系统诺卡氏菌病原体。
    方法:我们在这里介绍一名54岁的中国男性,发烧和头痛持续15天,表现出阳性的脑膜刺激症状。磁共振成像显示侧脑室右侧三角脉络丛炎和弥漫性软脑膜脑膜炎累及双侧大脑半球,小脑半球,和脑干。患者在入院后48小时内通过下一代测序迅速诊断为中枢神经系统诺卡氏菌感染。同时,脑脊髓液培养中的诺卡氏菌阳性染色证实了诊断。患者给予甲氧苄啶-磺胺甲恶唑,三天后他的症状恢复了。
    结论:在这种情况下,临床,放射学,和微生物学发现强调了怀疑诺卡氏菌为怀疑免疫功能不全的中枢神经系统炎症患者的潜在病原体的重要性。此外,下一代测序作为一种有效的检测方法,也极力推荐可疑中枢神经系统感染患者进行快速诊断和治疗.
    BACKGROUND: Nocardiosis is an unusual infection caused by aerobic gram-positive bacteria in the genus Nocardia. Infections resulting from Nocardia species are frequent in immunosuppressive patients. Weakened immune systems caused by human immunodeficiency virus infection, diabetes, cancer, and other conditions such as chronic lung disease, renal failure, etc, are the main risk factors for nocardiosis. Central nervous system (CNS) nocardiosis has been reported to represent ~2% of all and to be present in 15% to 50% of patients with systemic infection. The patient in our case had an isolated CNS nocardiosis caused by Nocardia terpenica infection, a rare reclassified Nocardia pathogen of CNS nocardiosis.
    METHODS: We here present a 54-year-old Chinese male with a fever and headache for 15 days who showed positive meningeal irritation signs. Magnetic resonance imaging showed the right trigone of the lateral ventricular choroid plexitis and diffused leptomeningeal meningitis involving the bilateral cerebral hemisphere, cerebellar hemisphere, and brain stem. The patient was quickly diagnosed with CNS Nocardia infection by next-generation sequencing within 48 hours after admission. Meanwhile, the diagnosis was validated by Nocardia-positive staining in cerebral spinal fluid culturing. The patient was given trimethoprim-sulfamethoxazole, and his symptoms recovered after 3 days.
    CONCLUSIONS: In this case, the clinical, radiological, and microbiological findings highlight the importance of suspecting Nocardia as the potential pathogen in patients with central nervous system inflammation of doubted immune incompetence. In addition, next-generation sequencing as an effective test is also highly recommended for suspicious CNS infection patients to perform a rapid diagnosis and treatment.
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  • 文章类型: Case Reports
    诺卡氏菌是一种广泛存在于自然环境中的人畜共患细菌。然而,因为它是革兰氏阳性需氧机会病原体,在没有免疫功能疾病病史的患者中很少发生。由于症状是非特异性的,因此诺卡氏菌肺炎的诊断具有挑战性。以前的研究没有报道这种在人体中定居的人畜共患病细菌可能会由于牙龈疼痛和咽部不适而导致严重的肺炎。该病例报告描述了一位以前健康的60岁女性农民,她向医生展示了牙龈疼痛和咽部不适。她接受了牙齿清洁和口服甲硝唑治疗。患者迅速进展为呼吸困难。CT检查发现肺部阴影。放射科医生诊断为基于图像的肺结核。通过对患者痰液和血液中的病原微生物进行实验室检查和培养,没有发现明显的阳性结果.病情迅速进展为气管插管呼吸机辅助呼吸。随后,患者在气管内插管纤维支气管镜下接受了肺泡盥洗室检查,肺泡灌洗液培养提示诺卡氏菌。根据这个结果,选择靶向药物复方磺胺甲恶唑和静脉注射美罗培南治疗后,患者病情迅速得到控制。鉴于多数病例诺卡氏菌培养阳性率低,误诊率高,本病例报道的从口腔感染症状到致命性肺炎的临床诊疗思路具有一定的临床推广和启示意义,不仅改善了罕见疾病的诊断和治疗,还能减少医疗纠纷。
    Nocardia is an anthropozoonotic bacteria that occurs widely in the natural environment. However, because it is a gram-positive aerobic opportunistic pathogen, it rarely occurs in patients with no prior history of immune function disease. Since the symptoms are nonspecific the diagnosis of Nocardia pneumonia is challenging. Previous studies have not reported that this anthropozoonotic bacteria colonizing the human body could cause severe pneumonia by gingival pain and pharyngeal discomfort. This case report describes a previously healthy 60-year-old female farmer who presented to the doctor with gingival pain and pharyngeal discomfort. She was treated with a dental cleaning and oral metronidazole. The patient rapidly progressed to breathing difficulties. Lung shadow was found by computerized tomography examination. The radiologist diagnosed pulmonary tuberculosis as image-based. Through laboratory examination and culture of pathogenic microorganisms in the sputum and blood of the patient, no obvious positive findings were found. The disease progressed rapidly to tracheal intubation ventilator assisted breathing. Subsequently, the patient underwent alveolar lavatory examination under endotracheal intubation fiberbronchoscopy, and the culture of alveolar lavage fluid indicated Nocardia. According to this result, the patient\'s disease was quickly controlled after selecting the targeted drug compound sulfamethoxazole and intravenous meropenem for treatment. In view of the reason for the high misdiagnosis rate due to the low positive rate of Nocardia culture in most cases, the clinical thinking of diagnosis and treatment from oral infection symptoms to fatal pneumonia reported in this case has certain clinical popularization and enlighten significance, not only improved the diagnosis and treatment of rare diseases, but also be reduced medical disputes.
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  • 文章类型: Journal Article
    居住在土壤中的放线菌是全球微生物组的多样化和普遍存在的组成部分,但在很大程度上缺乏与模型物种(如大肠杆菌或恶臭假单胞菌)相当的遗传工具。对它们作为生物技术宿主的表征和利用构成了根本障碍。为了解决这个问题,我们开发了一个模块化的质粒组装框架,以及一系列遗传控制元件,用于先前遗传上难以处理的革兰氏阳性环境分离株红球菌C208,并在11个其他环境分离株中证明了保守的功能。诺卡氏菌,还有Gordonia.该工具包包含五个分枝杆菌复制起点,五种广泛的宿主抗生素抗性标记,转录和翻译控制元件,荧光记者,四环素诱导系统,和一个反向选择标记。我们使用此工具包来询问红球红球菌N9T-4中的类胡萝卜素生物合成途径,红球红球菌N9T-4是一种弱的类胡萝卜素环境分离株,并设计了向酮-类胡萝卜素角黄素的更高途径通量。这项工作为环境分枝杆菌建立了几种新的遗传工具,并提供了合成生物学框架来支持这些物种中复杂遗传回路的设计。重要土壤放线菌,特别是分枝杆菌,包括可持续生物制造的不同新宿主和新兴的机会病原体。红球菌,Gordonia,诺卡氏菌和诺卡氏菌是三个丰富的属,具有特别灵活的代谢和未开发的天然产物发现潜力。其中,红球菌C208被证明可以降解聚乙烯;Gordonia石蜡可以从固体碳氢化合物中吸收碳;和新的诺卡氏菌(以及许多其他诺卡氏菌。)具有类异戊二烯生物合成的双重途径。许多物种积累高水平的类胡萝卜素色素,表明可用于萜烯和其他商品类异戊二烯的发酵的高活性类异戊二烯生物合成途径。模块化遗传工具包已被证明对模型生物的基础和应用研究都有价值,但是大多数放线菌都缺乏这样的工具。我们开发了一套遗传工具和DNA组装框架,以实现广泛的功能,并促进这些生物体中遗传构建体的快速原型化。
    Soil-dwelling Actinomycetes are a diverse and ubiquitous component of the global microbiome but largely lack genetic tools comparable to those available in model species such as Escherichia coli or Pseudomonas putida, posing a fundamental barrier to their characterization and utilization as hosts for biotechnology. To address this, we have developed a modular plasmid assembly framework, along with a series of genetic control elements for the previously genetically intractable Gram-positive environmental isolate Rhodococcus ruber C208, and demonstrate conserved functionality in 11 additional environmental isolates of Rhodococcus, Nocardia, and Gordonia. This toolkit encompasses five Mycobacteriale origins of replication, five broad-host-range antibiotic resistance markers, transcriptional and translational control elements, fluorescent reporters, a tetracycline-inducible system, and a counter-selectable marker. We use this toolkit to interrogate the carotenoid biosynthesis pathway in Rhodococcus erythropolis N9T-4, a weakly carotenogenic environmental isolate and engineer higher pathway flux toward the keto-carotenoid canthaxanthin. This work establishes several new genetic tools for environmental Mycobacteriales and provides a synthetic biology framework to support the design of complex genetic circuits in these species.IMPORTANCESoil-dwelling Actinomycetes, particularly the Mycobacteriales, include both diverse new hosts for sustainable biomanufacturing and emerging opportunistic pathogens. Rhodococcus, Gordonia, and Nocardia are three abundant genera with particularly flexible metabolisms and untapped potential for natural product discovery. Among these, Rhodococcus ruber C208 was shown to degrade polyethylene; Gordonia paraffinivorans can assimilate carbon from solid hydrocarbons; and Nocardia neocaledoniensis (and many other Nocardia spp.) possesses dual isoprenoid biosynthesis pathways. Many species accumulate high levels of carotenoid pigments, indicative of highly active isoprenoid biosynthesis pathways which may be harnessed for fermentation of terpenes and other commodity isoprenoids. Modular genetic toolkits have proven valuable for both fundamental and applied research in model organisms, but such tools are lacking for most Actinomycetes. Our suite of genetic tools and DNA assembly framework were developed for broad functionality and to facilitate rapid prototyping of genetic constructs in these organisms.
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  • 文章类型: Journal Article
    新生儿败血症在出生后的第一周内导致严重的发病率和偶尔死亡。特别是在低收入和中等收入国家。经验性治疗包括WHO推荐的抗生素。然而,这些对抗菌多药耐药菌株,如克雷伯菌属,大肠杆菌,和金黄色葡萄球菌。为了解决这个问题,寻求具有抗菌活性的新分子和化合物的替代来源作为选择。放线菌,特别是致病菌株,揭示了生物技术潜力仍未得到充分开发。这项研究旨在确定生物合成基因簇的存在以及从临床病例中分离出的针对与新生儿败血症有关的多药耐药细菌的放线菌菌株的抗菌活性。总的来说,使用了从放线菌瘤临床病例中分离的15株菌株。PCR筛选PKS-I,PKS-II,NRPS-I,和NRPS-II生物合成系统决定了它们产生次级代谢产物的潜力。随后通过垂直横纹法对菌株进行了抗肺炎克雷伯菌亚种FergusoniiSec23的抗微生物活性测定。肺炎克雷伯菌H1064,花色克雷伯菌H776,氧化克雷伯菌H793和肺炎克雷伯菌亚种。ozaenaeH7595,以前被归类为多药耐药。最后,通过16SrRNA基因序列分析对菌株进行鉴定。发现100%的放线菌具有生物合成系统。最常见的生物合成系统是NRPS-I(100%),最常见的组合是NRPS-I和PKS-II(27%)。所有15个菌株均显示出抗微生物活性。具有最高抗菌活性的菌株是白链霉菌94.1572,因为它抑制了所评估的5种多重耐药细菌的生长。
    Neonatal sepsis leads to severe morbidity and occasionally death among neonates within the first week following birth, particularly in low- and middle-income countries. Empirical therapy includes antibiotics recommended by WHO. However, these have been ineffective against antimicrobial multidrug-resistant bacterial strains such as Klebsiella spp, Escherichia coli, and Staphylococcus aureus species. To counter this problem, new molecules and alternative sources of compounds with antibacterial activity are sought as options. Actinobacteria, particularly pathogenic strains, have revealed a biotechnological potential still underexplored. This study aimed to determine the presence of biosynthetic gene clusters and the antimicrobial activity of actinobacterial strains isolated from clinical cases against multidrug-resistant bacteria implicated in neonatal sepsis. In total, 15 strains isolated from clinical cases of actinomycetoma were used. PCR screening for the PKS-I, PKS-II, NRPS-I, and NRPS-II biosynthetic systems determined their secondary metabolite-producing potential. The strains were subsequently assayed for antimicrobial activity by the perpendicular cross streak method against Escherichia fergusonii Sec 23, Klebsiella pneumoniae subsp. pneumoniae H1064, Klebsiella variicola H776, Klebsiella oxytoca H793, and Klebsiella pneumoniae subsp. ozaenae H7595, previously classified as multidrug-resistant. Finally, the strains were identified by 16S rRNA gene sequence analysis. It was found that 100% of the actinobacteria had biosynthetic systems. The most frequent biosynthetic system was NRPS-I (100%), and the most frequent combination was NRPS-I and PKS-II (27%). All 15 strains showed antimicrobial activity. The strain with the highest antimicrobial activity was Streptomyces albus 94.1572, as it inhibited the growth of the five multidrug-resistant bacteria evaluated.
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  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    Nocardiosis, characterized by poor prognosis and high mortality, is a local or systemic suppurative or granulomatous disease caused by Nocardia that is common in immunosuppressed individuals but rare in populations with normal immune function. This paper described one case of Nocardia gipuzkoensis disseminated infection in a patient with normal immune function by outlining the process of treatment, conducting literature review and by outlining the clinical characteristics, diagnostic criteria and standardized treatments of nocardia disease, in the hope of providing reference for subsequent treatment of rare Nocardia subspecies infections.
    诺卡菌病是一种由诺卡菌引起的局部或全身化脓性或肉芽肿性病变,通常发生在免疫抑制状态人群,预后不佳,病死率较高,在免疫功能正常的人群中较少发病。本文介绍一例免疫功能正常患者罹患播散性gipuzkoensis诺卡菌感染的病例,总结了该病例的临床特点及诊疗经过,并进行相关的文献检索及回顾,探讨了诺卡菌病的临床特点、诊断标准及规范化治疗,希望为未来少见诺卡菌亚种感染的治疗提供参考意见。.
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  • 文章类型: Journal Article
    背景:诺卡氏菌感染通常被认为是影响衰弱或免疫受损个体的机会性肺部病原体。由诺卡氏菌引起的脑脓肿很少见,并提出了诊断挑战。用于识别诺卡氏菌物种的传统诊断技术,比如血培养,显微镜,和病理学,表现不足。在报告的案例中,我们应用宏基因组下一代测序(mNGS)来诊断一例由N.farcinica引起的脑脓肿。
    方法:一名66岁女性在手受伤后出现脑脓肿。患者表现出人格的逐渐变化,并在右上肢经历了持续1个月的震颤。
    方法:通过mNGS在脑脊液中鉴定出导致多发性脑脓肿的病原体为N.farcinica。
    方法:抗生素治疗包括甲氧苄啶-磺胺甲恶唑,利奈唑胺,阿米卡星,美罗培南,和莫西沙星.
    结果:使用已知对病原体敏感的抗生素后,患者的症状和体征明显改善。经过5个月的随访,头部磁共振成像显示脓肿基本治愈。患者生活正常,无药物不良反应。
    结论:诺卡氏菌脑感染的特点是发病隐匿,缺乏独特的临床和影像学特征。在这种情况下,mNGS有利于及时识别和管理诺卡氏菌相关的脑脓肿,并且无需进行侵入性脑部手术。快速和精确的诊断加上及时的抗生素治疗可以显着降低与这种情况相关的死亡率。
    BACKGROUND: Nocardia infection is commonly regarded as an opportunistic pulmonary pathogen affecting debilitated or immunocompromised individuals. Brain abscesses caused by Nocardia farcinica are rare and pose a diagnostic challenge. Traditional diagnostic techniques for identifying Nocardia species, such as blood culture, microscopy, and pathology, have shown inadequate performance. In the reported case, we applied metagenomic next-generation sequencing (mNGS) to diagnose a case of brain abscess due to N. farcinica.
    METHODS: A 66-year-old female developed a brain abscess after sustaining a hand injury. The patient exhibited a gradual change in personality and experienced tremors in her right upper limb for a duration of 1 month.
    METHODS: The pathogen responsible for the multiple brain abscesses was identified in the cerebrospinal fluid as N. farcinica through mNGS.
    METHODS: Antibiotic treatment included trimethoprim-sulfamethoxazole, linezolid, amikacin, meropenem, and moxifloxacin.
    RESULTS: The patient\'s symptoms and signs improved significantly after administration of antibiotics to which the pathogen is known to be sensitive. After 5 months of follow-up, magnetic resonance imaging of the head showed that the abscess was basically cured. The patient lived a normal life with no adverse drug reactions.
    CONCLUSIONS: Nocardia brain infection is characterized by an insidious onset and lacks distinctive clinical and imaging features. mNGS was advantageous for the timely identification and management of Nocardia-associated brain abscess in the present case and obviated the need for invasive brain surgery. Expeditious and precise diagnosis coupled with prompt antibiotic therapy can significantly reduce the mortality rate associated with this condition.
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  • 文章类型: Journal Article
    鱼类诺卡氏菌病是一种主要由诺卡氏菌引起的慢性疾病,发生在各种经济养殖的淡水和海洋鱼类中。研究表明,DNA疫苗是保护鱼类免受细菌感染的有效治疗方法。在我们之前的实验中,体内诱导的N.seriolae基因,编码磷酸转酮酶(PK)家族蛋白,通过体内诱导抗原技术鉴定。在本研究中,通过生物信息学分析编码PK家族蛋白的抗原基因,并进一步插入真核表达载体pcDNA3.1-myc-his-A,用于DNA疫苗开发。pcDNA-PKDNA疫苗的免疫效果在杂种蛇头(Channamaculata‰×Channaargus‰)中进行了评估,显示几种血清酶活性参数的诱导(包括LZM,SOD,ACP和AKP),增加特异性抗体IgM水平,以及六个免疫相关基因(CD4,CD8α,TNFα,IL-1β,MHCIα和MHCIα)。此外,与对照组相比,在接种疫苗的鱼中用N.seriolae人工攻击后,相对存活率为53.82%。总之,这些结果表明,pcDNA-PKDNA疫苗可以在杂种蛇头中增强强烈的免疫反应,并显示出优选的保护效力。可应用于水产养殖,以控制鱼类的诺卡心病。
    Fish nocardiosis is a chronic disease mainly caused by Nocardia seriolae, which occurs in a variety of economically cultured freshwater and marine fish. Studies have shown that DNA vaccine is an effective treatment to protect fish from bacterial infection. In our previous experiment, an in vivo-induced gene of N. seriolae, encoding phosphoketolase (PK) family protein, was identified by in vivo-induced antigen technology. In the present study, the antigenic gene encoding PK family protein was analyzed by bioinformatics and further inserted into the eukaryotic expression vector pcDNA3.1-myc-his-A for DNA vaccine development. The immunological effects of pcDNA-PK DNA vaccine were assessed in hybrid snakehead (Channa maculata ♀ × Channa argus ♂), showing induction in several serum enzyme activity parameters (including LZM, SOD, ACP and AKP), increasing in specific-antibody IgM levels, as well as up-regulation in six immune-related genes (CD4, CD8α, TNFα, IL-1β, MHCIα and MHCIIα). Moreover, an immune-protection with a relative survival rate was provided at 53.82 % following artificial challenge with N. seriolae in vaccinated fish in comparison to the control group. In summary, these results indicate that pcDNA-PK DNA vaccine could boost strong immune responses in hybrid snakehead and show preferably protective efficacy against N. seriolae, which may be applied in aquaculture to control fish nocardiosis.
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