network physiology

网络生理学
  • 文章类型: Journal Article
    亚稳态中的振荡复杂网络已被用于研究大脑中整合和隔离活动的出现,它们被假设为认知的基础。然而,实现亚稳态所需的参数和潜在机制很难确定,通常依赖于最大化与经验功能连通性动力学的相关性。这里,我们提出并表明,在存在相位挫折的情况下,大脑的分层模块化中尺度结构可以单独产生鲁棒的亚稳态动力学和(亚稳态)嵌合体状态。我们构建了相同的Kuramoto-Sakaguchi振荡器的未加权3层分层网络,通过网络的平均程度和结构参数来参数化,该结构参数确定了上两层中块之间和块内的连接比率。一起,这些参数影响系统的特征时间尺度。远离关键同步点,我们检测到最低分层中亚稳态的出现,并在上层中与嵌合体和亚稳态共存。使用拉普拉斯重整化群流方法,我们发现了两种不同的途径,以实现在这些不同层中检测到的亚稳态机制。在上层,我们展示了对称破坏状态如何取决于系统的慢本征模。相反,在最低层,当层之间的时间尺度分离达到临界阈值时,可以实现亚稳态动力学。我们的结果表明亚稳态之间存在明确的关系,嵌合体国家,和系统的本征模式,弥合基于谐波的经验数据研究和振荡模型之间的差距。
    Oscillatory complex networks in the metastable regime have been used to study the emergence of integrated and segregated activity in the brain, which are hypothesised to be fundamental for cognition. Yet, the parameters and the underlying mechanisms necessary to achieve the metastable regime are hard to identify, often relying on maximising the correlation with empirical functional connectivity dynamics. Here, we propose and show that the brain\'s hierarchically modular mesoscale structure alone can give rise to robust metastable dynamics and (metastable) chimera states in the presence of phase frustration. We construct unweighted 3-layer hierarchical networks of identical Kuramoto-Sakaguchi oscillators, parameterized by the average degree of the network and a structural parameter determining the ratio of connections between and within blocks in the upper two layers. Together, these parameters affect the characteristic timescales of the system. Away from the critical synchronization point, we detect the emergence of metastable states in the lowest hierarchical layer coexisting with chimera and metastable states in the upper layers. Using the Laplacian renormalization group flow approach, we uncover two distinct pathways towards achieving the metastable regimes detected in these distinct layers. In the upper layers, we show how the symmetry-breaking states depend on the slow eigenmodes of the system. In the lowest layer instead, metastable dynamics can be achieved as the separation of timescales between layers reaches a critical threshold. Our results show an explicit relationship between metastability, chimera states, and the eigenmodes of the system, bridging the gap between harmonic based studies of empirical data and oscillatory models.
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  • 文章类型: Journal Article
    大脑和相互感受信号之间的相互作用是维持内部平衡和协调神经动力学的关键,包含对知觉和自我意识的影响。这种相互作用的核心是外部世界之间的差异,他人和自我,身体自我意识建设的基石。这篇综述综合了生理和行为证据,说明了互感信号如何介导或影响身体自我意识,通过包含与各种感官方式的相互作用。为了加深我们对身体自我意识基础的理解,我们提出了网络生理学的观点。这种方法探索了跨多个节点的复杂神经计算,将焦点从局部区域转移到大规模神经网络。它研究了这些网络如何与内脏活动的变化并行运行并适应变化。在这个框架内,我们建议调查破坏身体自我意识的生理因素,强调交互感受途径中断的影响,提供跨越多个临床背景的见解。这种综合观点不仅可以提高心理健康评估的准确性,而且为有针对性的干预措施铺平了道路。
    The interplay between the brain and interoceptive signals is key in maintaining internal balance and orchestrating neural dynamics, encompassing influences on perceptual and self-awareness. Central to this interplay is the differentiation between the external world, others and the self, a cornerstone in the construction of bodily self-awareness. This review synthesizes physiological and behavioral evidence illustrating how interoceptive signals can mediate or influence bodily self-awareness, by encompassing interactions with various sensory modalities. To deepen our understanding of the basis of bodily self-awareness, we propose a network physiology perspective. This approach explores complex neural computations across multiple nodes, shifting the focus from localized areas to large-scale neural networks. It examines how these networks operate in parallel with and adapt to changes in visceral activities. Within this framework, we propose to investigate physiological factors that disrupt bodily self-awareness, emphasizing the impact of interoceptive pathway disruptions, offering insights across several clinical contexts. This integrative perspective not only can enhance the accuracy of mental health assessments but also paves the way for targeted interventions.
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  • 文章类型: Journal Article
    尖峰神经元网络中突触相互作用的动力学在塑造新兴的集体行为中起着基本作用。本文研究了通过一般突触函数互连的二次积分和激发神经元的有限大小网络,该函数考虑了突触动力学和时间延迟。通过渐近分析,我们将这个集成和火力网络转变为仓本-酒口模型,其参数通过突触功能特征明确表达。这种减少产生关于突触激活率和时间延迟的分析条件,确定突触耦合是吸引的还是排斥的。我们的分析揭示了同步和部分同步点火的交替稳定区域,依赖于缓慢的突触激活和时间延迟。我们还证明了简化的微观模型预测同步的出现,弱稳定的独眼状态,在原始的集成和点火网络及其theta神经元对应物中,非平稳状态非常好。我们的减少方法有望为严格分析具有突触适应性和可塑性的网络中的节律发生打开大门。
    The dynamics of synaptic interactions within spiking neuron networks play a fundamental role in shaping emergent collective behavior. This paper studies a finite-size network of quadratic integrate-and-fire neurons interconnected via a general synaptic function that accounts for synaptic dynamics and time delays. Through asymptotic analysis, we transform this integrate-and-fire network into the Kuramoto-Sakaguchi model, whose parameters are explicitly expressed via synaptic function characteristics. This reduction yields analytical conditions on synaptic activation rates and time delays determining whether the synaptic coupling is attractive or repulsive. Our analysis reveals alternating stability regions for synchronous and partially synchronous firing, dependent on slow synaptic activation and time delay. We also demonstrate that the reduced microscopic model predicts the emergence of synchronization, weakly stable cyclops states, and non-stationary regimes remarkably well in the original integrate-and-fire network and its theta neuron counterpart. Our reduction approach promises to open the door to rigorous analysis of rhythmogenesis in networks with synaptic adaptation and plasticity.
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  • 文章类型: Journal Article
    纹状体作为基底神经节的一部分是两个运动的中心,和认知功能。这里,我们为大脑的这一部分提出了一个大规模的生物物理网络,使用改良的Hodgkin-Huxley动力学来模拟神经元,以及由详细的人类地图集提供信息的连通性。该模型显示了不同的时空活动模式,对应于较低的(大概是正常的)和增加的皮质纹状体激活(如,例如,强迫症),取决于皮层输入的强度。通过应用无方程方法,我们能够直接从微观模拟中进行宏观网络分析。我们确定平均突触活动是系统的宏观变量,与局部场势相似。无方程方法可对纹状体网络的宏观动力学进行数值分叉和稳定性分析。不同的宏观状态可以分配给正常/健康和病理状况,从神经系统疾病中得知。最后,在无方程分叉分析的指导下,我们提出了纹状体网络的治疗闭环控制方案。
    The striatum as part of the basal ganglia is central to both motor, and cognitive functions. Here, we propose a large-scale biophysical network for this part of the brain, using modified Hodgkin-Huxley dynamics to model neurons, and a connectivity informed by a detailed human atlas. The model shows different spatio-temporal activity patterns corresponding to lower (presumably normal) and increased cortico-striatal activation (as found in, e.g., obsessive-compulsive disorder), depending on the intensity of the cortical inputs. By applying equation-free methods, we are able to perform a macroscopic network analysis directly from microscale simulations. We identify the mean synaptic activity as the macroscopic variable of the system, which shows similarity with local field potentials. The equation-free approach results in a numerical bifurcation and stability analysis of the macroscopic dynamics of the striatal network. The different macroscopic states can be assigned to normal/healthy and pathological conditions, as known from neurological disorders. Finally, guided by the equation-free bifurcation analysis, we propose a therapeutic close loop control scheme for the striatal network.
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  • 文章类型: Journal Article
    肺癌等肺部疾病会显著改变器官的机械特性,直接影响发育,programming,诊断,和疾病的治疗反应。尽管人们对肺的材料特性非常感兴趣,在肺泡下分辨率下测量完整肺的硬度是不可能的。最近,我们开发了晶体胸腔,以光学分辨率成像功能的肺,同时控制生理参数,如气压。这里,我们引入了数据驱动,在不同膨胀压力下拍摄肺部图像的多尺度网络模型,通过水晶胸腔获得,并生成相应的绝对刚度图。验证后,我们报告了健康和疾病中功能正常的肺的微观分辨率的绝对刚度图.对于健康肺和患有原发性癌症的肺的代表性图像,我们发现,虽然肺在微观尺度上表现出显著的硬度异质性,原发性肿瘤在肺的微环境中引入更大的异质性。此外,我们观察到,虽然健康的肺泡表现出75倍的应变硬化,在测量的经肺压力范围内,肿瘤的硬度增加了六倍。虽然在3cmH2O的经肺压力下,肿瘤硬度是肺硬度的1.4倍,在18cmH2O的经肺压力下,肿瘤的平均硬度几乎是周围组织的5倍。最后,我们报告说,在健康肺和癌性肺中,应变和僵硬度的变化都随着经肺压力的增加而增加。我们的新方法可以定量评估疾病引起的肺泡硬度变化,并对机械传导产生影响。
    Lung diseases such as cancer substantially alter the mechanical properties of the organ with direct impact on the development, progression, diagnosis, and treatment response of diseases. Despite significant interest in the lung\'s material properties, measuring the stiffness of intact lungs at sub-alveolar resolution has not been possible. Recently, we developed the crystal ribcage to image functioning lungs at optical resolution while controlling physiological parameters such as air pressure. Here, we introduce a data-driven, multiscale network model that takes images of the lung at different distending pressures, acquired via the crystal ribcage, and produces corresponding absolute stiffness maps. Following validation, we report absolute stiffness maps of the functioning lung at microscale resolution in health and disease. For representative images of a healthy lung and a lung with primary cancer, we find that while the lung exhibits significant stiffness heterogeneity at the microscale, primary tumors introduce even greater heterogeneity into the lung\'s microenvironment. Additionally, we observe that while the healthy alveoli exhibit strain-stiffening of ∼1.75 times, the tumor\'s stiffness increases by a factor of six across the range of measured transpulmonary pressures. While the tumor stiffness is 1.4 times the lung stiffness at a transpulmonary pressure of three cmH2O, the tumor\'s mean stiffness is nearly five times greater than that of the surrounding tissue at a transpulmonary pressure of 18 cmH2O. Finally, we report that the variance in both strain and stiffness increases with transpulmonary pressure in both the healthy and cancerous lungs. Our new method allows quantitative assessment of disease-induced stiffness changes in the alveoli with implications for mechanotransduction.
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  • 文章类型: Journal Article
    目前治疗心律失常如室颤的方法涉及高能电击的应用,在心肌中诱导大量电流,因此涉及严重的副作用,如可能的组织损伤和创伤后应激。对四种不同的二维可激发介质模型进行数值模拟,这项研究表明,在跨膜电位平均值的局部最小值后不久施加的低能量脉冲提供了很高的成功率。我们在每个模型的十个初始条件下评估这种方法的性能,十种空间不同的刺激,和不同的冲击幅度。所研究的2D可激发介质模型涵盖了广泛的主频率和相位奇点数量,这表明,我们的发现不限于特定类型的模型或参数化。因此,我们提出了一种结合底层系统动力学的方法,即使在起搏过程中,并且完全依赖于可观察的标量,这在数值模拟中很容易测量。
    Current treatments of cardiac arrhythmias like ventricular fibrillation involve the application of a high-energy electric shock, that induces significant electrical currents in the myocardium and therefore involves severe side effects like possible tissue damage and post-traumatic stress. Using numerical simulations on four different models of 2D excitable media, this study demonstrates that low energy pulses applied shortly after local minima in the mean value of the transmembrane potential provide high success rates. We evaluate the performance of this approach for ten initial conditions of each model, ten spatially different stimuli, and different shock amplitudes. The investigated models of 2D excitable media cover a broad range of dominant frequencies and number of phase singularities, which demonstrates, that our findings are not limited to a specific kind of model or parameterization of it. Thus, we propose a method that incorporates the dynamics of the underlying system, even during pacing, and solely relies on a scalar observable, which is easily measurable in numerical simulations.
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  • 文章类型: Journal Article
    癫痫是一种以反复发作为特征的神经系统疾病,影响全球超过6500万人。治疗通常从使用抗癫痫药物开始,包括单一疗法和多疗法。如果这些失败,更具侵入性的治疗方法,如手术,电刺激和局灶性药物递送通常被认为是为了使患者无癫痫发作。虽然很大一部分最终受益于这些治疗方案,治疗反应经常随着时间的推移而波动。这些时间变化背后的生理机制知之甚少,使预后成为治疗癫痫的重大挑战。在这里,我们使用癫痫发作过渡的动态网络模型来了解癫痫发作倾向如何随着时间的推移而随着兴奋性的变化而变化。通过计算机模拟,我们探讨了治疗对动态网络特性的影响与其随时间的脆弱性之间的关系,这些脆弱性允许患者恢复到高发作倾向状态.对于小型网络,我们表明漏洞可以通过第一个传递组件(FTC)的大小来完全表征。对于更大的网络,我们找到了网络效率的衡量标准,不相干和异质性(程度方差)与网络对增加兴奋性的鲁棒性相关。这些结果为癫痫的治疗干预提供了一组潜在的预后标志物。这些标记可用于支持个性化治疗策略的开发,最终有助于理解长期癫痫发作的自由。
    Epilepsy is a neurological disorder characterized by recurrent seizures, affecting over 65 million people worldwide. Treatment typically commences with the use of anti-seizure medications, including both mono- and poly-therapy. Should these fail, more invasive therapies such as surgery, electrical stimulation and focal drug delivery are often considered in an attempt to render the person seizure free. Although a significant portion ultimately benefit from these treatment options, treatment responses often fluctuate over time. The physiological mechanisms underlying these temporal variations are poorly understood, making prognosis a significant challenge when treating epilepsy. Here we use a dynamic network model of seizure transition to understand how seizure propensity may vary over time as a consequence of changes in excitability. Through computer simulations, we explore the relationship between the impact of treatment on dynamic network properties and their vulnerability over time that permit a return to states of high seizure propensity. For small networks we show vulnerability can be fully characterised by the size of the first transitive component (FTC). For larger networks, we find measures of network efficiency, incoherence and heterogeneity (degree variance) correlate with robustness of networks to increasing excitability. These results provide a set of potential prognostic markers for therapeutic interventions in epilepsy. Such markers could be used to support the development of personalized treatment strategies, ultimately contributing to understanding of long-term seizure freedom.
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  • 文章类型: Journal Article
    在这项研究中,我们专注于两个子网络中常见的游泳中央模式发生器(CPG)的电路在海,Melibeleonina和Dendronotusiris,表明它们独立地能够稳定地产生突发性网络爆发。此观察结果提出了一个问题,即冗余爆裂机制的协调是否在给定的游泳CPG中的节奏产生及其调节中起作用。为了解决这个问题,我们研究了两个成对节律生成网络,并检查了它们的基本成分的性质:细胞和突触,这对于正确的网络组装及其稳定的功能至关重要。我们对细胞动力学进行了慢速-快速分解分析,并强调了其在孤立和耦合神经元中发生的显着分叉。还介绍并研究了具有高滤波效率和时间延迟的慢速突触的新模型。我们的发现表明,在具有网络滞后的双细胞节律生成网络中存在两种振荡模式:i)半中心振荡器和ii)兴奋抑制对。这些2细胞网络提供了作为通用构建块的潜力,可以在较大的神经电路的模块化组织中结合使用,从而保持强大的网络滞后。
    In this study we focus on two subnetworks common in the circuitry of swim central pattern generators (CPGs) in the sea slugs, Melibe leonina and Dendronotus iris and show that they are independently capable of stably producing emergent network bursting. This observation raises the question of whether the coordination of redundant bursting mechanisms plays a role in the generation of rhythm and its regulation in the given swim CPGs. To address this question, we investigate two pairwise rhythm-generating networks and examine the properties of their fundamental components: cellular and synaptic, which are crucial for proper network assembly and its stable function. We perform a slow-fast decomposition analysis of cellular dynamics and highlight its significant bifurcations occurring in isolated and coupled neurons. A novel model for slow synapses with high filtering efficiency and temporal delay is also introduced and examined. Our findings demonstrate the existence of two modes of oscillation in bicellular rhythm-generating networks with network hysteresis: i) a half-center oscillator and ii) an excitatory-inhibitory pair. These 2-cell networks offer potential as common building blocks combined in modular organization of larger neural circuits preserving robust network hysteresis.
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  • 文章类型: Journal Article
    研究胰岛炎症-胰岛炎的挑战之一是它是一种短暂的现象。传统的胰岛炎进展报告是基于累积,胰岛附近白细胞密度的供体平均值,阻碍疾病进展的胰岛内和胰岛间异质性。这里,我们的目的是了解为什么胰岛炎是不均匀的,通常在胰岛一侧形成胰岛周围炎病变。为了实现这一点,我们证明了网络理论在胰岛素炎期间分离胰岛内多细胞相互作用中的适用性。具体来说,我们问了这样一个问题:“胰岛中首先与免疫细胞相互作用的区域有什么独特之处?”这项研究利用非肥胖糖尿病小鼠模型的1型糖尿病,并检查了之间的相互作用α-,β-,T细胞,骨髓细胞,胰岛炎进展过程中胰岛中的巨噬细胞。基于个体胰岛中的T/β细胞比率跟踪疾病演变。在早期阶段,我们发现免疫细胞优先与胰岛的富含α细胞的区域相互作用。在胰岛外周,与没有α细胞邻居的细胞相比,发现α连接的β细胞被靶向得更多。此外,网络分析显示T-髓样增加,和T巨噬细胞与所有β细胞的相互作用。
    One of the challenges in studying islet inflammation-insulitis-is that it is a transient phenomenon. Traditional reporting of the insulitis progression is based on cumulative, donor-averaged values of leucocyte density in the vicinity of pancreatic islets, that hinder intra- and inter-islet heterogeneity of disease progression. Here, we aimed to understand why insulitis is non-uniform, often with peri-insulitis lesions formed on one side of an islet. To achieve this, we demonstrated the applicability of network theory in detangling intra-islet multi-cellular interactions during insulitis. Specifically, we asked the question \"What is unique about regions of the islet that interact with immune cells first\". This study utilized the non-obese diabetic mouse model of type one diabetes and examined the interplay among α-, β-, T-cells, myeloid cells, and macrophages in pancreatic islets during the progression of insulitis. Disease evolution was tracked based on the T/β cell ratio in individual islets. In the early stage, we found that immune cells are preferentially interacting with α-cell-rich regions of an islet. At the islet periphery α-linked β-cells were found to be targeted significantly more compared to those without α-cell neighbors. Additionally, network analysis revealed increased T-myeloid, and T-macrophage interactions with all β-cells.
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  • 文章类型: Journal Article
    生理网络通常由在多种不同时间尺度上进化的大量生物振荡器组成。相位振荡器在此类系统的同步动力学的建模中特别有用。如果耦合与内部参数的异质性相比足够强,同步状态可能会出现在相位振荡器开始相干的地方。这里,我们关注的情况下,同步振荡器被分为一个快速和一个缓慢的组件,使两个子集在分离的时间尺度上演变。我们通过,首先,使用Mori-Zwanzig形式主义减少快速的动态。第二,当两个分量中的振荡器受到具有可能不同的相关时间的噪声时,我们评估相位偏差的方差。从方差的一般表达式来看,我们考虑了特定的网络结构,并显示了快速和慢速组件之间的噪声传输如何受到影响。有趣的是,我们发现,当只有一个时间尺度时,振荡器是最稳健的,当系统经历时间尺度分离时,可能会变得最脆弱。我们还发现,分层网络似乎对这种时间尺度分离不敏感。
    Physiological networks are usually made of a large number of biological oscillators evolving on a multitude of different timescales. Phase oscillators are particularly useful in the modelling of the synchronization dynamics of such systems. If the coupling is strong enough compared to the heterogeneity of the internal parameters, synchronized states might emerge where phase oscillators start to behave coherently. Here, we focus on the case where synchronized oscillators are divided into a fast and a slow component so that the two subsets evolve on separated timescales. We assess the resilience of the slow component by, first, reducing the dynamics of the fast one using Mori-Zwanzig formalism. Second, we evaluate the variance of the phase deviations when the oscillators in the two components are subject to noise with possibly distinct correlation times. From the general expression for the variance, we consider specific network structures and show how the noise transmission between the fast and slow components is affected. Interestingly, we find that oscillators that are among the most robust when there is only a single timescale, might become the most vulnerable when the system undergoes a timescale separation. We also find that layered networks seem to be insensitive to such timescale separations.
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