multigene phylogeny

多基因系统发育
  • 文章类型: Journal Article
    Phylloachora(Phyllaachoraceae,Phyllaachorales)物种是寄生真菌,在全球范围内分布广泛,在植物上造成焦油斑点。在这项研究中,我们描述了三个新发现的物种:重州竹兰,Phyllachoraneidonsis,和来自中国禾本科的Phylloachora。根据内部转录间隔区(ITS)和中间的5.8SrRNA基因,使用形态特征和多位点系统发育来表征这些物种,rRNA基因(LSU)的大亚基,和18S核糖体RNA基因(SSU)。三种已知的氯化疟原虫,P.graminis,P.Miscanthi也被重新描述,因为,在审查氯化假单胞菌的原始参考文献时,P.graminis,还有P.Miscanthi,这些被发现是相对古老的,中文或缩写。此外,插图很简单。在分子鉴定中,ITS序列很短,而ITS,LSU,和SSU是不完整的。因此,本研究为三个已知物种的重新描述提供了新的重要参考,并为新分类群的鉴定提供了进一步的证据。
    Phyllachora (Phyllachoraceae, Phyllachorales) species are parasitic fungi with a wide global distribution, causing tar spots on plants. In this study, we describe three newly discovered species: Phyllachora chongzhouensis, Phyllachora neidongensis, and Phyllachora huiliensis from Poaceae in China. These species were characterized using morphological traits and multi-locus phylogeny based on the internal transcribed spacer region (ITS) with the intervening 5.8S rRNA gene, the large subunit of the rRNA gene (LSU), and the 18S ribosomal RNA gene (SSU). Three known species of P. chloridis, P. graminis, and P. miscanthi have also been redescribed, because, in reviewing the original references of P. chloridis, P. graminis, and P. miscanthi, these were found to be relatively old and in Chinese or abbreviated. In addition, the illustrations were simple. In molecular identification, the ITS sequence is short, while the ITS, LSU, and SSU are incomplete. Therefore, this study provides new important references for the redescription of three known species and provides further evidence for the identification of new taxa.
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  • 文章类型: Journal Article
    菌核病是发生在假丝酵母上的一种严重疾病。对病原真菌物种的透彻了解和生物学特性的了解对于控制菌核病很重要。通过组织分离从Z.念珠菌的病叶中分离出真菌菌株。科赫假说通过健康叶片的致病性筛选致病菌株,包括重新隔离和识别。通过从致病菌株中提取基因组DNA并测量四个位点的核苷酸序列,构建了多基因系统发育树,包括内部转录间隔区(ITS),RNA聚合酶Ⅱ第二大亚基(RPB2),甘油醛-3-磷酸脱氢酶(G3PDH),和热休克蛋白60(HSP60)。通过显微镜分析评估真菌结构的形态特征。观察并记录不同pH下病原菌的生长情况,不同的温度,不同的碳源和不同的氮源来阐明其生物学特性。代表性菌株D7,D13,X4和X15感染了Z.念珠菌并引起菌核病腐烂。在文化的开始,马铃薯葡萄糖琼脂(PDA)培养基上出现白色絮状真菌菌丝,7天后,菌落边缘出现黑色球形至不规则形菌核。菌核的直径为2.4-8.6毫米和0.4-0.9毫米,分别。一个菌核能够从1到5个菌核发芽。Ascus呈圆柱形或纺锤形,尺寸为110.0-120.0×9.2-11.6μm。其中一个含八种无色,椭圆形子囊孢子,尺寸为8.4-12.0×4.5-5.5μm。基于ITS基因序列构建的系统发育树,G3PDH,HSP60和RPB2,D7和D13与菌核病菌核病具有99%的同源性,而X4和X15与微小核盘菌有99%的同源性。当培养温度为15°C-25°C时,菌核菌生长更合适,pH5.0,碳源为麦芽糖,氮源为酵母粉。当培养温度为15°C时,美国次要生长更合适,pH5.0,碳源为葡萄糖,氮源为酵母粉。结果确定病原体为硬核链球菌和小链球菌。据我们所知,本报告首次报道菌核病菌和小型菌核病菌在Z.念珠菌上引起菌核病。本文旨在根据形态特征确定中国念珠菌菌核病的致病因子,分子鉴定,和致病性测试。进行了生物学特性实验,了解疾病的发生规律。我们还评估了有效控制这种疾病的方法。我们的发现为进一步研究盘菌腐烂的发病机制提供了支持。
    Sclerotinia rot is a serious disease that occurs on Zephyranthes candida. A thorough understanding of the pathogenic fungal species and understanding the biological characteristics are important for controlling sclerotinia. Fungal strains were isolated from the diseased leaves of Z. candida through tissue isolation. Koch\'s hypothesis screened pathogenic strains by pathogenicity of healthy leaves, including re-isolation and identification. A multigene phylogenetic tree was constructed by extracting genomic DNA from pathogenic strains and measuring the nucleotide sequences at four sites, including the internal transcribed spacer (ITS), RNA polymerase II second largest subunit (RPB2), glyceraldehyde-3-phosphate dehydrogenase (G3PDH), and heat shock protein 60 (HSP60). Morphological characteristics of the fungal structures were evaluated through microscopic analysis. The growth of pathogens was observed and recorded under different pH, different temperatures, different carbon sources and different nitrogen sources to clarify their biological characteristics. Representative strains D7, D13, X4, and X15 infected Z. candida and caused sclerotinia rot. At the beginning of the culture, white flocculent fungal hyphae appeared on the potato dextrose agar (PDA) medium, and black spherical to irregular-shaped sclerotia appeared at the edge of the colony after 7 days. The diameter of the sclerotia was 2.4-8.6 mm and 0.4-0.9 mm, respectively. One sclerotium was able to germinate from 1 to 5 apothecia. Ascus were cylindrical or spindle-shaped, with a size of 110.0-120.0 × 9.2-11.6 μm. One ascus contained eight colorless, oval ascospores, with a size of 8.4-12.0 × 4.5-5.5 μm. Based on the phylogenetic tree constructed with the gene sequences for ITS, G3PDH, HSP60, and RPB2, D7 and D13 shared 99% homology with sclerotinia sclerotiorum, whereas X4 and X15 shared 99% homology with sclerotinia minor. S. sclerotiorum growth was more suitable when the culture temperature was 15°C-25°C, pH 5.0, carbon source was maltose and nitrogen source was yeast powder. S. minor growth was more suitable when the culture temperature was 15°C, pH 5.0, the carbon source was glucose, and the nitrogen source was yeast powder. The results identified the pathogens as S. sclerotiorum and S. minor. To the best of our knowledge, this is the first report of S. sclerotiorum and S. minor causing sclerotinia rot on Z. candida. We herein aimed to identify the causal agent of sclerotinia rot of Z. candida in China based on morphological characteristics, molecular identification, and pathogenicity tests. Performed the experiments on the biological characteristics, to understand the law of disease occurrence. We also evaluated methods for the effective control of this disease. Our findings provide support for further studies on the pathogenesis mechanism of sclerotinia rot.
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  • 文章类型: Journal Article
    Microdochiaceae(Xylariales,梭菌)已从世界各地报道,并从不同的植物宿主中收集。拟议的新属和两个新种,viz.,Macroidriellagen。11月。,M.bambusaesp.11月。和Microdochiumaustralesp.11月。,基于ITSrDNA组合数据集中的多基因座系统发育,LSU,RPB2和TUB2具有形态特征。Microdochiumsinense是从芦苇的病叶中收集的,这是该真菌在该寄主植物上的首次报道。同时,我们注释了10372到1863个基因,鉴定出4,909个单拷贝直系同源基因,并根据基因组数据进行了系统发育分析。进行了基因家族分析,它将扩大对Microdochiaceae进化史和生物多样性的理解。提供了物种的详细描述和插图。
    Species of the family Microdochiaceae (Xylariales, Sordariomycetes) have been reported from worldwide, and collected from different plant hosts. The proposed new genus and two new species, viz., Macroidriella gen. nov., M.bambusae sp. nov. and Microdochiumaustrale sp. nov., are based on multi-locus phylogenies from a combined dataset of ITS rDNA, LSU, RPB2 and TUB2 with morphological characteristics. Microdochiumsinense has been collected from diseased leaves of Phragmitesaustralis and this is the first report of the fungus on this host plant. Simultaneously, we annotated 10,372 to 11,863 genes, identified 4,909 single-copy orthologous genes, and conducted phylogenomic analysis based on genomic data. A gene family analysis was performed and it will expand the understanding of the evolutionary history and biodiversity of the Microdochiaceae. The detailed descriptions and illustrations of species are provided.
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  • 文章类型: Journal Article
    Pinibarrenia衣原体,sp.11月。从新泽西松树贫瘠的高灌木蓝莓根中分离出来,进行了描述和说明。基于多基因系统发育分析,以及形态和生态特征,建立了Pinibarreniales和Pinibarreniaceae,以适应Sordariomycetidae中的这种新谱系,梭菌。Pinibarreniales,Tracyllalales,和Vermiculariopsielales被建议包括在Sordaromycetidae亚类中。Pinibarreniales可能具有广泛的分布,并与生活在酸性和寡营养环境中的Ericaceae植物形成关联,因为其DNA条形码与来自其他独立生态研究的环境序列相匹配。植物-真菌相互作用实验揭示了对拟南芥的负面影响,表明其致病性。这种发现的新真菌谱系将有助于更好地了解梭菌的多样性和系统性。
    Pinibarrenia chlamydospora, sp. nov. isolated from the roots of highbush blueberry in the New Jersey Pine Barrens, is described and illustrated. Based on multigene phylogenetic analysis, as well as morphological and ecological characteristics, Pinibarreniales and Pinibarreniaceae are established to accommodate this novel lineage in Sordariomycetidae, Sordariomycetes. Pinibarreniales, Tracyllalales, and Vermiculariopsiellales are proposed to be included in the subclass Sordariomycetidae. Pinibarreniales likely have a wide distribution and forms association with Ericaceae plants that live in acidic and oligotrophic environments because its DNA barcode matches with environmental sequences from other independent ecological studies. The plant-fungal interaction experiment revealed negative impacts on Arabidopsis, indicating its pathogenicity. This uncovered new fungal lineage will contribute to a better understanding of the diversity and systematics of Sordariomycetes.
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  • 文章类型: Journal Article
    Diaporthales真菌的成员是囊性真菌,包括植物病原体(臭名昭著的栗病真菌),以及土壤和内生菌,并且能够在不同的生态系统中定居各种各样的基质,栖息地,和世界各地的主机。然而,许多远足动物物种仍未被识别,其分类类别中的各种不一致仍有待解决。这里,我们的目的是通过结合形态和分子特征,并结合这些信息来扩展我们目前对该顺序的系统发育理解,从而鉴定和分类Diaporthales的新物种。从福建省山茶(山茶科)和cr(木科)的枯枝和病叶中获得真菌样品,中国。基于形态学特征和分子系统发育分析,这些分析来自内部转录间隔区的基因座与中间5.8SnrRNA基因(ITS)的组合核苷酸序列,核核糖体RNA基因的28S大亚基(LSU),翻译延伸因子1-α基因(tef1),部分β-微管蛋白基因(tub2),和部分RNA聚合酶II第二大亚基基因(rpb2),鉴定并鉴定了三种新的Diaporthales物种。它们如下:金叶山茶花。11月。,蓖麻树突状芽孢杆菌。11月。,和五味子假斜牙。11月。对它们进行了描述和说明。这项研究扩展了我们对Diaporthales内物种多样性的理解。
    Members of the fungal order Diaporthales are sac fungi that include plant pathogens (the notorious chestnut blight fungus), as well as saprobes and endophytes, and are capable of colonizing a wide variety of substrates in different ecosystems, habitats, and hosts worldwide. However, many Diaporthales species remain unidentified, and various inconsistencies within its taxonomic category remain to be resolved. Here, we aimed to identify and classify new species of Diaporthales by using combined morphological and molecular characterization and coupling this information to expand our current phylogenetic understanding of this order. Fungal samples were obtained from dead branches and diseasedleaves of Camellia (Theaceae) and Castanopsis (Fagaceae) in Fujian Province, China. Based on morphological characteristics and molecular phylogenetic analyses derived from the combined nucleotide sequences of loci of the internal transcribed spacer regions with the intervening 5.8S nrRNA gene (ITS), the 28S large subunit of nuclear ribosomal RNA gene (LSU), the translation elongation factor 1-α gene (tef1), the partial beta-tubulin gene (tub2), and partial RNA polymerase II second-largest subunit gene (rpb2), three new species of Diaporthales were identified and characterized. They are as follows: Chrysofolia camelliae sp. nov., Dendrostoma castanopsidis sp. nov., and Pseudoplagiostoma wuyishanense sp. nov. They are described and illustrated. This study extends our understanding of species diversity within the Diaporthales.
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  • 文章类型: Journal Article
    蘑菇,Russulales和Boletales是担子菌野生蘑菇中的主要订单。菊科,陆地生态系统中的主要功能元素之一,主要以印度喜马拉雅和毗邻山丘的树木的外生菌根共生体为代表,非常多样化,并由许多未开发或鲜为人知的属和物种代表。因此,他们隐藏的多样性尚未被揭示。作者对喜马拉雅和周围环境的不同部分进行了广泛的大型真菌勘探,随后通过形态学研究和多基因分子系统发育,发现了五种新的野生蘑菇:Leccinellumbothiisp。11月。,Phylloporushimalayanussp.11月。,Phylloporussmithiisp.11月。,赤道氏卟啉。11月。,和retiboletuspseudoatersp。11月。目前的通讯涉及形态细节以及插图和系统发育推论。此外,这个国家也首次报道了中国紫菜和紫菜。
    Agaricales, Russulales and Boletales are dominant orders among the wild mushrooms in Basidiomycota. Boletaceae, one of the major functional elements in terrestrial ecosystem and mostly represented by ectomycorrhizal symbionts of trees in Indian Himalaya and adjoining hills, are extraordinarily diverse and represented by numerous genera and species which are unexplored or poorly known. Therefore, their hidden diversity is yet to be revealed. Extensive macrofungal exploration by the authors to different parts of Himalaya and surroundings, followed by through morphological studies and multigene molecular phylogeny lead to the discovery of five new species of wild mushrooms: Leccinellum bothii sp. nov., Phylloporus himalayanus sp. nov., Phylloporus smithii sp. nov., Porphyrellus uttarakhandae sp. nov., and Retiboletus pseudoater sp. nov. Present communication deals with morphological details coupled with illustrations and phylogenetic inferences. Besides, Leccinellum sinoaurantiacum and Xerocomus rugosellus are also reported for the first time from this country.
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  • 文章类型: Journal Article
    一个新的属,基于对Boletaceae的广泛分类群采样的多个蛋白质编码基因(atp6,cox3,tef1和rpb2)分析,建立了Rostrupomyces以适应Xerocoussisongkhramensis。在我们的系统发育中,新属是Xerocomoideae亚科的Rubinosporus的姐妹,在系统发育上远离Xerocomus,在同一Xerocomoideae亚科中作为Phylloporus的姐妹得到了高度支持。Rostrupomyces与Boletaceae中的其他属的区别在于以下特征的组合:rugulose到亚rugulosepileus表面,年轻时的白色毛孔随着年龄的增长而变黄,粗糙下的柄表面散布有颗粒状的鳞片,白色基底菌丝体,任何部分不变的颜色,黄褐色孢子印,宽椭圆体到椭圆体,光滑的担子孢子。此外,半叶菜,也来自Xerocomoideae亚科,是新描述的。介绍了新属和新物种的详细描述和插图。
    A new genus, Rostrupomyces is established to accommodate Xerocomussisongkhramensis based on multiple protein-coding genes (atp6, cox3, tef1, and rpb2) analyses of a wide taxon sampling of Boletaceae. In our phylogeny, the new genus was sister to Rubinosporus in subfamily Xerocomoideae, phylogenetically distant from Xerocomus, which was highly supported as sister to Phylloporus in the same subfamily Xerocomoideae. Rostrupomyces is different from other genera in Boletaceae by the following combination of characters: rugulose to subrugulose pileus surface, white pores when young becoming pale yellow in age, subscabrous stipe surface scattered with granulose squamules, white basal mycelium, unchanging color in any parts, yellowish brown spore print, and broadly ellipsoid to ellipsoid, smooth basidiospores. In addition, Hemileccinuminferius, also from subfamily Xerocomoideae, is newly described. Detailed descriptions and illustrations of the new genus and new species are presented.
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  • 文章类型: Journal Article
    云南南部和西南部的热带地区具有丰富的真菌多样性。此外,云南省种子植物区系的多样性高于中国其他地区,木本植物特有物种丰富,为真菌提供了有利的基质。云南省橡胶园大面积分布,尤其是在西双版纳。云南省橡胶类真菌调查中,中国,收集带有真菌子实体的死橡胶树枝。形态特征和多基因系统发育分析(ITS,LSU,SSU,rpb2和tef1-α)揭示了四个不同的新物种,在本文中描述为黑色素瘤,Nigrogranalincangensis,假金花和假金花。详细说明,提供了插图和系统发育树,以显示这些新物种的分类学位置。
    The tropical areas in southern and south-western Yunnan are rich in fungal diversity. Additionally, the diversity of seed flora in Yunnan Province is higher than in other regions in China and the abundant endemic species of woody plants provide favourable substrates for fungi. Rubber plantations in Yunnan Province are distributed over a large area, especially in Xishuangbanna. During a survey of rubber-associated fungi in Yunnan Province, China, dead rubber branches with fungal fruiting bodies were collected. Morphological characteristics and multigene phylogenetic analyses (ITS, LSU, SSU, rpb2 and tef1-α) revealed four distinct new species, described herein as Melomastiapuerensis, Nigrogranalincangensis, Pseudochaetosphaeronemalincangensis and Pseudochaetosphaeronemaxishuangbannaensis. Detailed descriptions, illustrations and phylogenetic trees are provided to show the taxonomic placements of these new species.
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  • 文章类型: Journal Article
    通向分支的溃疡,在Cederberg荒野地区的南非特有的拉菲亚(Fabaceae)上观察到了茎和植物死亡,南非,2021年9月。在溃疡上发现了分生孢子,和分离一致产生了一种微球藻物种。基于内部转录间隔区(ITS)的部分核苷酸序列的系统发育分析,核大亚基(LSU)和RNA聚合酶II第二大亚基(RPB2)区域表明真菌代表了未描述的物种。基于多基因系统发育和形态特征,我们在这里将该物种描述为M.rafniaesp.11月。致病性测试和Koch的假设的实现证实了拉氏分枝杆菌。11月。是R.amplexicaulis溃疡的原因。目前,这种疾病在南非的一个地方被发现,并需要进一步调查以确定其分布和相对重要性。引文:PaapT,马林科维茨S,PhamNQ,RoetsF,巴森RJ,WingfieldBD,奥伯兰德K,WingfieldMJ(2023年)。一种新的小球藻在南非的拉夫亚动物上引起溃疡。真菌系统学和进化12:73-80。doi:10.3114/fuse.2023.12.05。
    Cankers leading to branch, stem and plant death were observed on the South African endemic Rafnia amplexicaulis (Fabaceae) in the Cederberg Wilderness Area, South Africa, during September 2021. Conidiomatal pycnidia were found developing on the cankers, and isolations consistently yielded a Microsphaeropsis species. Phylogenetic analysis based on partial nucleotide sequences of the internal transcribed spacers (ITS), the nuclear large subunit (LSU) and RNA polymerase II second largest subunit (RPB2) regions showed that the fungus represented an undescribed species. Based on the multigene phylogeny and morphological characteristics, we describe the species here as M. rafniae sp. nov. Pathogenicity tests and the fulfilment of Koch\'s postulates confirmed that M. rafniae sp. nov. is the cause of the cankers of R. amplexicaulis. Presently, this disease is known from a single location in South Africa, and further surveys are required to determine its distribution and relative importance. Citation: Paap T, Marincowitz S, Pham NQ, Roets F, Basson RJ, Wingfield BD, Oberlander K, Wingfield MJ (2023). A novel species of Microsphaeropsis causing cankers on Rafnia amplexicaulis in South Africa. Fungal Systematics and Evolution 12: 73-80. doi: 10.3114/fuse.2023.12.05.
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  • 文章类型: Journal Article
    麦冬(天门冬科)是多年生草种,可作为观赏植物和药用植物栽培。2021年4月至2022年9月,日照市发现了一种严重的刺槐叶枯病,山东省,中国。最初的疾病症状是小的黄色斑点,最终发展为叶枯病,通常与许多小的,黑色,在病变中形成的半浸入式比目鱼分生孢子。为了获得这种疾病的致病因子的分离株,样品是从日照市刺槐病叶中随机采集的。总共从样品中获得了97个毛竹分离株,并使用内部转录间隔区(ITS)对组合数据集的形态特征和多位点系统发育分析进行了研究,核糖体RNA的28S大亚基(LSU),和部分平移延伸因子1-α(tef),肌动蛋白(act)和甘油醛-3-磷酸脱氢酶(gapdh)基因座。系统发育,这些毛竹分离株在浓集假单胞菌物种复合体中形成了进化枝,簇生有毛孢子菌和细脊菌。形态学上,该进化枝中的分离株与毛孢子菌和尖刺菌的分生孢子细胞和分生孢子的大小不同,并且没有顶端分生孢子附属物。因此,这些分离株被描述为一种新物种。使用科赫的假设证实了致病性,这表明,在中国的日本竹节虫上可以诱发叶枯病症状。引文:王丙乙,王T-T,马C-Y,XueH,李勇,朴C-G,江宁(2023年)。毛竹。11月。在中国引起麦冬叶枯病。真菌系统学和进化11:43-50。doi:10.3114/fuse.2023.11.03。
    Ophiopogon japonicus (Asparagaceae) is a perennial grass species which can be cultivated as an ornamental and medicinal plant. From April 2021 to September 2022, a serious leaf blight disease of O. japonicus was discovered in Rizhao City, Shandong Province, China. The initial disease symptoms were small yellow spots, finally developing as tip blight, often associated with many small, black, semi-immersed pycnidial conidiomata formed in lesions. To obtain isolates of the causal agent for this disease, samples were randomly collected from O. japonicus diseased leaves in Rizhao City. In total 97 Phyllosticta isolates were obtained from samples, and studied using morphological features and multi-locus phylogenetic analyses of a combined dataset using the internal transcribed spacers (ITS), the 28S large subunit of ribosomal RNA (LSU), and partial translation elongation factor 1-alpha (tef), actin (act) and glyceraldehyde-3-phosphate dehydrogenase (gapdh) loci. Phylogenetically, these Phyllosticta isolates formed a clade in the P. concentrica species complex, and clustered with P. pilospora and P. spinarum. Morphologically, isolates in this clade differed from P. pilospora and P. spinarum by the size of conidiogenous cells and conidia, and the absence of an apical conidial appendage. As a result, these isolates were described as a novel species Phyllosticta rizhaoensis. Pathogenicity was confirmed using Koch\'s postulates, which showed that P. rizhaoensis could induce leaf blight symptoms on O. japonicus in China. Citation: Wang C-B, Wang T-T, Ma C-Y, Xue H, Li Y, Piao C-G, Jiang N (2023). Phyllosticta rizhaoensis sp. nov. causing leaf blight of Ophiopogon japonicus in China. Fungal Systematics and Evolution 11: 43-50. doi: 10.3114/fuse.2023.11.03.
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