movement model

运动模型
  • 文章类型: Journal Article
    目标:低纬度地区的后缘种群,变化范围的后退边缘面临着气候变化带来的高灭绝风险,除非它们能够通过扩散来跟踪最佳环境条件。
    方法:我们将散布模型拟合到北卡罗来纳州南部阿巴拉契亚山脉的3165只单独标记的黑喉蓝莺(Setophagacaerulescens)的位置,美国从2002年到2023年。该种群中黑喉蓝莺的繁殖丰度在较高海拔的较冷和较湿润地区保持相对稳定,但在较低海拔的较温暖和较干燥地区却有所下降。
    结果:幼莺的散布距离中位数为917m(范围23-3200m),和分散倾向于远离温暖干燥的地方。相比之下,成虫在繁殖季节之间表现出很强的位置保真度,很少分散超过100m(范围10-1300m)。因此,成年散粒比出生散粒更紧凑和对称,这表明成年人的扩散不太可能是这个人口下降的驱动力。
    结论:我们的研究结果表明,定向出生扩散可以通过允许个体跟踪气候变化并避免温暖边缘范围边界的变暖条件来减轻后缘人群的健身成本。
    OBJECTIVE: Trailing-edge populations at the low-latitude, receding edge of a shifting range face high extinction risk from climate change unless they are able to track optimal environmental conditions through dispersal.
    METHODS: We fit dispersal models to the locations of 3165 individually-marked black-throated blue warblers (Setophaga caerulescens) in the southern Appalachian Mountains in North Carolina, USA from 2002 to 2023. Black-throated blue warbler breeding abundance in this population has remained relatively stable at colder and wetter areas at higher elevations but has declined at warmer and drier areas at lower elevations.
    RESULTS: Median dispersal distance of young warblers was 917 m (range 23-3200 m), and dispersal tended to be directed away from warm and dry locations. In contrast, adults exhibited strong site fidelity between breeding seasons and rarely dispersed more than 100 m (range 10-1300 m). Consequently, adult dispersal kernels were much more compact and symmetric than natal dispersal kernels, suggesting adult dispersal is unlikely a driving force of declines in this population.
    CONCLUSIONS: Our findings suggest that directional natal dispersal may mitigate fitness costs for trailing-edge populations by allowing individuals to track changing climate and avoid warming conditions at warm-edge range boundaries.
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  • 文章类型: Journal Article
    在许多团队运动中,在球场上的危险区域控制和创造空间的能力对球队的成功至关重要。Thishold,特别是,足球。在这项研究中,我们重新审视了Fernandez和Bornn(2018)的想法,他们引入了与空间相关的有趣数量,包括音高控制(PC)和音高值。我们通过球员的动作来识别球员在球场上的影响,并将他们的概念转化为数据驱动的数量,从而产生各种不同的应用。此外,我们设计了一种新颖的空间生成措施,以可视化团队和球员的策略。我们为我们的贡献的有用性提供了经验证据,并在博弈分析的背景下展示了我们的方法。
    In many team sports, the ability to control and generate space in dangerous areas on the pitch is crucial for the success of a team. This holds, in particular, for soccer. In this study, we revisit ideas from Fernandez and Bornn (2018) who introduced interesting space-related quantities including pitch control (PC) and pitch value. We identify influence of the player on the pitch with the movements of the player and turn their concepts into data-driven quantities that give rise to a variety of different applications. Furthermore, we devise a novel space generation measure to visualize the strategies of the team and player. We provide empirical evidence for the usefulness of our contribution and showcase our approach in the context of game analyses.
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  • 文章类型: Journal Article
    许多动物将它们的运动限制在一个典型的家庭范围内。这种受限的空间使用模式被认为是由于记忆异构分布式资源的位置和质量所带来的觅食益处。然而,由于感官知觉的混杂效应,在野外,记忆在家庭运动行为中的作用缺乏明确的证据。这里,我们分析了大型哺乳动物在田间资源操作实验中的觅食决策,该实验旨在消除记忆和感知的影响。我们使用实验数据对空间过渡的机械模型进行参数化,以量化动物觅食行为的认知过程,并预测个体对空间和时间上的资源异质性的反应。我们证明了the(Capreoluscapreolus)依赖于记忆,不是感知,跟踪资源在其家庭范围内的时空动态。Roe鹿觅食决定主要基于最近的经验(属性和空间记忆的半衰期为0.9和5.6d,分别),使他们能够适应资源可用性的突然变化。所提出的基于记忆的模型既能够量化鹿行为背后的认知过程,又能够准确预测它们在实验过程中如何改变资源使用。我们的研究强调了这样一个事实,即动物觅食决策是基于对可用资源位置的不完整信息,这是一个对动物空间行为的准确预测至关重要的因素,但通常在野外动物运动分析中没有考虑到。
    Many animals restrict their movements to a characteristic home range. This constrained pattern of space use is thought to result from the foraging benefits of memorizing the locations and quality of heterogeneously distributed resources. However, due to the confounding effects of sensory perception, the role of memory in home-range movement behavior lacks definitive evidence in the wild. Here, we analyze the foraging decisions of a large mammal during a field resource manipulation experiment designed to disentangle the effects of memory and perception. We parametrize a mechanistic model of spatial transitions using experimental data to quantify the cognitive processes underlying animal foraging behavior and to predict how individuals respond to resource heterogeneity in space and time. We demonstrate that roe deer (Capreolus capreolus) rely on memory, not perception, to track the spatiotemporal dynamics of resources within their home range. Roe deer foraging decisions were primarily based on recent experience (half-lives of 0.9 and 5.6 d for attribute and spatial memory, respectively), enabling them to adapt to sudden changes in resource availability. The proposed memory-based model was able to both quantify the cognitive processes underlying roe deer behavior and accurately predict how they shifted resource use during the experiment. Our study highlights the fact that animal foraging decisions are based on incomplete information on the locations of available resources, a factor that is critical to developing accurate predictions of animal spatial behavior but is typically not accounted for in analyses of animal movement in the wild.
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  • 文章类型: Journal Article
    我们预计无人机将成为受欢迎的野生动物调查平台。因为从空气中探测动物是不完美的,我们使用两台数码相机开发了一种标记-重新捕获线横断面方法,可能安装在一架飞机上,覆盖相同的区域,它们之间有很短的时间延迟。摄像机之间的动物运动引入了个人身份的不确定性,因此,个体捕获历史是不可观察的,并被视为潜在变量。我们通过自动枚举包含模棱两可身份的样段中的所有可能性,来获得没有捕获历史记录的标记重新捕获线样段的可能性,而不是试图在之前的步骤中决定身份。我们将此方法称为“潜在捕获历史记录枚举”(LCE)。我们为定期无法检测的物种提供了一个可用性模型,比如潜水时无法察觉的鲸目动物。需要外部数据来估计可用性周期长度,但不是平均可用率,如果采用完全可用性模型。我们将LCE方法与最近开发的集群捕获-重新捕获方法(CCR)进行了比较,使用Palm似然近似,提供CCR与最大似然的第一次比较。LCE估计器的方差略低,随着样本量的增加,并接近名义覆盖概率。这两种方法都是近似无偏的。我们用港口海豚调查的半合成数据进行说明。
    We anticipate that unmanned aerial vehicles will become popular wildlife survey platforms. Because detecting animals from the air is imperfect, we develop a mark-recapture line transect method using two digital cameras, possibly mounted on one aircraft, which cover the same area with a short time delay between them. Animal movement between the passage of the cameras introduces uncertainty in individual identity, so individual capture histories are unobservable and are treated as latent variables. We obtain the likelihood for mark-recapture line transects without capture histories by automatically enumerating all possibilities within segments of the transect that contain ambiguous identities, instead of attempting to decide identities in a prior step. We call this method \"Latent Capture-history Enumeration\" (LCE). We include an availability model for species that are periodically unavailable for detection, such as cetaceans that are undetectable while diving. External data are needed to estimate the availability cycle length, but not the mean availability rate, if the full availability model is employed. We compare the LCE method with the recently developed cluster capture-recapture method (CCR), which uses a Palm likelihood approximation, providing the first comparison of CCR with maximum likelihood. The LCE estimator has slightly lower variance, more so as sample size increases, and close to nominal coverage probabilities. Both methods are approximately unbiased. We illustrate with semisynthetic data from a harbor porpoise survey.
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  • 文章类型: Journal Article
    迁徙是影响当地物种的基本过程,区域,和大规模动力学。生态学的范式观点是,移民与密度无关(DIE)或与密度有关(DDE)。然而,替代形式在生物学上是合理的,包括负(-DDE),U形(UDDE),和驼峰形(hDDE)形式。我们回顾了经验文献,以评估不同形式的密度依赖性移民的频率以及形式是否取决于方法。我们还开发了一个反应扩散模型,以说明不同形式的DDE如何影响补丁级别的种群持久性。我们发现了145项研究,大多数代表DIE(30%)和+DDE(36%)。然而,我们还经常发现-DDE(25%)和非线性DDE(9%)的证据,其中uDDE1例,hDDE2例。非线性DDE检测可能由于使用很少的密度水平和小的密度范围而受到阻碍。根据我们的模型,DIE和+DDE促进了稳定和持久的种群。uDDE和-DDE生成Allee效果,减少最小补丁大小。最后,-DDE和hDDE模型产生了双稳态,可以在较低密度下建立种群。我们得出的结论是,移民过程可能是自然界中密度的多种函数,而其他DDE形式可能会对种群动态产生重要影响。
    Emigration is a fundamental process affecting species\' local, regional, and large-scale dynamics. The paradigmatic view in ecology is that emigration is density independent (DIE) or positive density dependent (+DDE). However, alternative forms are biologically plausible, including negative (-DDE), U-shaped (uDDE), and hump-shaped (hDDE) forms. We reviewed the empirical literature to assess the frequency of different forms of density-dependent emigration and whether the form depended on methodology. We also developed a reaction-diffusion model to illustrate how different forms of DDE can affect patch-level population persistence. We found 145 studies, the majority representing DIE (30%) and +DDE (36%). However, we also regularly found -DDE (25%) and evidence for nonlinear DDE (9%), including one case of uDDE and two cases of hDDE. Nonlinear DDE detection is likely hindered by the use of few density levels and small density ranges. Based on our models, DIE and +DDE promoted stable and persistent populations. uDDE and -DDE generated an Allee effect that decreases minimum patch size. Last, -DDE and hDDE models yielded bistability that allows the establishment of populations at lower densities. We conclude that the emigration process can be a diverse function of density in nature and that alternative DDE forms can have important consequences for population dynamics.
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  • 文章类型: Journal Article
    联合物种分布建模使研究人员能够从物种水平分析转向社区水平分析,导致统计上更有效和生态上更多信息的数据使用。这里,我们提出了联合物种运动建模(JSMM)作为一种类似的方法,可以从多物种运动数据中推断物种和社区级别的运动参数。物种级运动参数被建模为物种特征和系统发育关系的函数,让人们问物种特征如何影响运动,以及系统发育相关的物种在运动行为上是否相似。我们通过两个对比案例研究来说明建模框架:用于直接观察鸟类运动的随机再分配模型和用于捕获-捕获蛾运动数据的空间结构扩散模型。在这两种情况下,JSMM确定了几个解释物种之间运动行为差异的特征,例如,在鸟类和飞蛾中,运动速度随身体大小而增加。我们通过模拟表明,JSMM方法通过借用密切相关或具有相似性状的其他物种的信息来提高特定物种参数估计的精度。JSMM框架适用于多种数据,它有助于对运动行为种间变化的原因和后果进行机械理解。
    Joint species distribution modeling has enabled researchers to move from species-level to community-level analyses, leading to statistically more efficient and ecologically more informative use of data. Here, we propose joint species movement modeling (JSMM) as an analogous approach that enables inferring both species- and community-level movement parameters from multispecies movement data. The species-level movement parameters are modeled as a function of species traits and phylogenetic relationships, allowing one to ask how species traits influence movements, and whether phylogenetically related species are similar in their movement behavior. We illustrate the modeling framework with two contrasting case studies: a stochastic redistribution model for direct observations of bird movements and a spatially structured diffusion model for capture-recapture data on moth movements. In both cases, the JSMM identified several traits that explain differences in movement behavior among species, such as movement rate increasing with body size in both birds and moths. We show with simulations that the JSMM approach increases precision of species-specific parameter estimates by borrowing information from other species that are closely related or have similar traits. The JSMM framework is applicable for many kinds of data, and it facilitates a mechanistic understanding of the causes and consequences of interspecific variation in movement behavior.
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  • 文章类型: Journal Article
    BACKGROUND: Matching animal movement with the behaviors that shape life history requires a rigorous connection between the observed patterns of space use and inferred behavioral states. As animal-borne dataloggers capture a greater diversity and frequency of three dimensional movements, we can increase the complexity of movement models describing animal behavior. One challenge in combining data streams is the different spatial and temporal frequency of observations. Nested movement models provide a flexible framework for gleaning data from long-duration, but temporally sparse, data sources.
    RESULTS: Using a two-layer nested model, we combined geographic and vertical movement to infer traveling, foraging and resting behaviors of Humpback whales off the West Antarctic Peninsula. This approach refined previous work using only geographic data to delineate coarser behavioral states. Our results showed increased intensity in foraging activity in late season animals as the whales prepared to migrate north to tropical calving grounds. Our model also suggests strong diel variation in movement states, likely linked to daily changes in prey distribution.
    CONCLUSIONS: Using a combination of two-dimensional and three-dimensional movement data, we highlight the connection between whale movement and krill availability, as well as the complex spatial pattern of whale foraging in productive polar waters.
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  • 文章类型: Journal Article
    家庭范围概念是动物生态学和行为的核心,并且已经开发了许多机械模型来了解家庭范围的形成和维护。这些机械模型通常假设一个单一的,连续的家庭范围。在这里,我们描述和实现一个简单的家庭范围模型,可以容纳多个家庭范围中心,形成复杂的形状,允许使用模式中的不连续性,并推断外部和内部变量如何影响运动和使用模式。该模型假设个人与两个或多个家庭中心相关联,并以某种可估计的概率在其中移动。家庭牧场中心及其周围的运动受二维Ornstein-Uhlenbeck过程的支配,而中心之间的转换被建模为随机状态切换过程。我们通过引入环境和人口统计学协变量来扩展此基础模型,这些协变量可以修改家庭范围中心之间的过渡概率,并且可以进行估计以提供对运动过程的了解。我们使用来自加利福尼亚州海獭(Enhydralutris)的遥测数据演示了该模型。使用贝叶斯马尔可夫链蒙特卡罗方法对模型进行拟合,估计转移概率,以及独特的Ornstein-Uhlenbeck扩散和集中趋势参数。然后,可以使用估计的参数来模拟与实际数据几乎无法区分的运动和空间使用。我们使用偏差信息标准(DIC)评分来评估模型拟合度,并确定风和生殖状态都可以预测家庭牧场中心之间的过渡。在大风天,女性不太可能在家庭中心之间移动,抚育幼犬时不太可能在中心之间移动,更有可能在小狗断奶后在中心之间移动。这些趋势是通过理论运动规则预测的,但以前未知,表明我们的模型可以从复杂的运动数据中提取有意义的行为洞察力。
    The home-range concept is central in animal ecology and behavior, and numerous mechanistic models have been developed to understand home range formation and maintenance. These mechanistic models usually assume a single, contiguous home range. Here we describe and implement a simple home-range model that can accommodate multiple home-range centers, form complex shapes, allow discontinuities in use patterns, and infer how external and internal variables affect movement and use patterns. The model assumes individuals associate with two or more home-range centers and move among them with some estimable probability. Movement in and around home-range centers is governed by a two-dimensional Ornstein-Uhlenbeck process, while transitions between centers are modeled as a stochastic state-switching process. We augmented this base model by introducing environmental and demographic covariates that modify transition probabilities between home-range centers and can be estimated to provide insight into the movement process. We demonstrate the model using telemetry data from sea otters (Enhydra lutris) in California. The model was fit using a Bayesian Markov Chain Monte Carlo method, which estimated transition probabilities, as well as unique Ornstein-Uhlenbeck diffusion and centralizing tendency parameters. Estimated parameters could then be used to simulate movement and space use that was virtually indistinguishable from real data. We used Deviance Information Criterion (DIC) scores to assess model fit and determined that both wind and reproductive status were predictive of transitions between home-range centers. Females were less likely to move between home-range centers on windy days, less likely to move between centers when tending pups, and much more likely to move between centers just after weaning a pup. These tendencies are predicted by theoretical movement rules but were not previously known and show that our model can extract meaningful behavioral insight from complex movement data.
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  • 文章类型: Journal Article
    Animal movement is essential to our understanding of population dynamics, animal behavior, and the impacts of global change. Coupled with high-resolution biotelemetry data, exciting new inferences about animal movement have been facilitated by various specifications of contemporary models. These approaches differ, but most share common themes. One key distinction is whether the underlying movement process is conceptualized in discrete or continuous time. This is perhaps the greatest source of confusion among practitioners, both in terms of implementation and biological interpretation. In general, animal movement occurs in continuous time but we observe it at fixed discrete-time intervals. Thus, continuous time is conceptually and theoretically appealing, but in practice it is perhaps more intuitive to interpret movement in discrete intervals. With an emphasis on state-space models, we explore the differences and similarities between continuous and discrete versions of mechanistic movement models, establish some common terminology, and indicate under which circumstances one form might be preferred over another. Counter to the overly simplistic view that discrete- and continuous-time conceptualizations are merely different means to the same end, we present novel mathematical results revealing hitherto unappreciated consequences of model formulation on inferences about animal movement. Notably, the speed and direction of movement are intrinsically linked in current continuous-time random walk formulations, and this can have important implications when interpreting animal behavior. We illustrate these concepts in the context of state-space models with multiple movement behavior states using northern fur seal (Callorhinus ursinus) biotelemetry data.
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