monogenic disorders

单基因疾病
  • 文章类型: Journal Article
    无细胞胎儿DNA(cffDNA)筛查是临床实践中检测染色体异常和常染色体显性(AD)状况的有价值的工具。这项研究介绍了一种用于常染色体隐性遗传(AR)cffDNA筛查的新型概念验证测定法,重点关注涉及NPC1基因的病例。我们的目的是说明ARcffDNA筛查在管理高风险妊娠中的显着益处,特别是在NPC1的双等位基因致病变异导致尼曼-皮克病,C1型(NPC),一种以进行性神经变性为特征的疾病。这项研究的三名参与者被招募并同意沙特阿拉伯的一家医院。这些参与者要么是NPC的携带者,要么是受该疾病影响的一级或二级亲属。没有为参与者的年龄设定具体标准。所有患者均在妊娠15至18周之间。使用基于扩增子的下一代测序(NGS),我们分析了从母体外周血中提取的cffDNA的接合性和变异。扩增子NGS后,分析是通过自定义数据分析管道完成的,该管道包括内部构建的数据处理脚本和常用软件包。重要的是,结果未向患者披露.我们的研究结果表明,在这三种情况下,ARcffDNA筛查结果与标准侵入性诊断测试一致。这种筛查方法提供了几个优点:与侵入性诊断测试相比,它为怀孕早期的家庭提供了关键信息,它有助于减轻父母的焦虑。此外,这种非侵入性方法可以确定已知家族变异的孕早期妊娠状态.未来的研究可能会扩展这种方法来筛选常见AR疾病中已知的致病变异。
    Cell-free fetal DNA (cffDNA) screening is a valuable tool in clinical practice for detecting chromosomal abnormalities and autosomal dominant (AD) conditions. This study introduces a novel proof-of-concept assay designed for autosomal recessive (AR) cffDNA screening, focusing on cases involving the NPC1 gene. We aim to illustrate the significant benefits of AR cffDNA screening in managing high-risk pregnancies, specifically where biallelic pathogenic variants in NPC1 cause Niemann-Pick disease, type C1 (NPC), a disorder marked by progressive neurodegeneration. Three participants for this study were recruited and gave consent to a hospital in Saudi Arabia. These participants were either carriers of NPC or had a first- or second-degree relative affected by the disorder. No specific criteria were set for the age of the participants. All were between 15 and 18 weeks of gestation. Using amplicon-based next-generation sequencing (NGS), we analyzed the zygosity and variants in cffDNA extracted from maternal peripheral blood. After amplicon NGS, analysis was completed by a custom data analysis pipeline that included in-house-built data processing scripts and commonly used software packages. Importantly, the results were not disclosed to the patients. Our findings showed that in all three cases, AR cffDNA screening results were consistent with standard invasive diagnostic testing. This screening method offers several advantages: it provides critical information to families earlier in the pregnancy compared to invasive diagnostic tests, and it helps to alleviate parental anxiety. Moreover, this non-invasive method can determine pregnancy status in the first trimester for known familial variants. Future research may extend this approach to screen for known disease-causing variants in common AR conditions.
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  • 文章类型: Journal Article
    Amyotrophic lateral sclerosis (ALS) is a sporadic disease in most of the cases; in 10-15% of cases genetic forms are recorded. A genetic form of ALS associated with the mutation in the ERBB4 gene (ALS19) has been reported in 2013. A protein encoded by the ERBB4 is probably involved in ubiquitous component of the pathogenesis of ALS. We present a case of ALS associated with a new pathogenic variant of the ERBB4 gene, with early bulbar onset and slow progression of the disease within 10 years.
    Боковой амиотрофический склероз (БАС) в большинстве случаев представляет спорадическое заболевание, в 10—15% случаев регистрируются генетические формы. В 2013 г. был описана генетическая форма БАС, обусловленная мутацией в гене ERBB4 (ALS19). Вероятно, белок, кодируемый геном ERBB4, задействован в универсальном звене патогенеза БАС. Представлено клиническое наблюдение пациентки с БАС с новым патогенным вариантом гена ERBB4, с ранним бульбарным дебютом и медленным прогрессированием заболевания в течение 10 лет.
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  • 文章类型: Journal Article
    基于腺相关病毒(AAV)的基因治疗的出现为患有严重单基因疾病的患者带来了希望。然而,对AAV载体和转基因产物的免疫应答提出了需要有效的免疫抑制策略的挑战。本系统综述集中于38项临床试验和35项真实世界研究中采用的免疫抑制方案。考虑到一系列单基因疾病,AAV血清型,和管理路线。该综述强调需要更深入地了解免疫抑制方案,以提高基于AAV的基因治疗的安全性和有效性。表征与各种基因治疗治疗相关的免疫应答对于优化治疗方案和确保即将进行的基因治疗干预的安全性和有效性至关重要。进一步研究和了解免疫抑制对疾病的影响,治疗,和给药途径将有助于未来开发更有效和更安全的基因治疗方法。
    The emergence of adeno-associated virus (AAV)-based gene therapy has brought hope to patients with severe monogenic disorders. However, immune responses to AAV vectors and transgene products present challenges that require effective immunosuppressive strategies. This systematic review focuses on the immunosuppressive protocols used in 38 clinical trials and 35 real-world studies, considering a range of monogenic diseases, AAV serotypes, and administration routes. The review underscores the need for a deeper understanding of immunosuppressive regimens to enhance the safety and effectiveness of AAV-based gene therapy. Characterizing the immunological responses associated with various gene therapy treatments is crucial for optimizing treatment protocols and ensuring the safety and efficacy of forthcoming gene therapy interventions. Further research and understanding of the impact of immunosuppression on disease, therapy, and route of administration will contribute to the development of more effective and safer gene therapy approaches in the future.
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  • 文章类型: Journal Article
    精神病症状常发生于特发性帕金森病(PD),常需要抗精神病药物治疗。大多数抗精神病药物有可能使PD的运动症状恶化;喹硫平,氯氮平,和匹马色林通常用于治疗特发性PD,因为这些药物往往具有较好的耐受性。尽管单基因形式的PD也可能出现精神病症状,在这种情况下,没有关于抗精神病药物使用的评论.本系统评价的目的是描述喹硫平的有效性和耐受性,氯氮平,和匹马色林在单基因PD相关精神病中的作用。使用PubMed进行了文献检索,Scopus,和Embase。搜索产生了24篇合格的文章,描述了30个人,尽管只有11例病例描述了对精神病症状的治疗反应;其中,6人出现症状改善或缓解(4人使用氯氮平,2人使用喹硫平),其中2例表现出较差的治疗反应(1例服用氯氮平,1例服用喹硫平),另外三个人在症状复发之前最初对抗精神病药物治疗有反应。喹硫平和氯氮平在GBA变异相关PD中的应用将分别进行简要综述。值得注意的是,没有发现匹马色林治疗的报告.与特发性PD文献一致,在大多数情况下使用相对低剂量的药物。最后,副作用很少报道。尽管喹硫平尤其是氯氮平治疗单基因PD精神病可能有效且耐受性良好,这篇综述强调了在这种情况下指导临床决策的现有证据的缺乏.
    Psychotic symptoms frequently occur in idiopathic Parkinson\'s disease (PD) and often require treatment with antipsychotic therapy. Most antipsychotics have the potential to worsen the motor symptoms of PD; quetiapine, clozapine, and pimavanserin are commonly used for the treatment of idiopathic PD because these medications tend to be comparatively well tolerated. Although psychotic symptoms may also occur in monogenic forms of PD, no reviews have focused on the use of antipsychotic medications in this context. The objective of the present systematic review was to characterize the effectiveness and tolerability of quetiapine, clozapine, and pimavanserin in monogenic PD-associated psychosis. A literature search was performed with PubMed, Scopus, and Embase. The search yielded 24 eligible articles describing 30 individuals, although treatment response with respect to psychotic symptoms was described in only 11 cases; of these, six individuals experienced symptomatic improvement or remission (four with clozapine and two with quetiapine), two exhibited a poor therapeutic response (one to clozapine and one to quetiapine), and the other three responded initially to antipsychotic therapy before experiencing a recurrence of symptoms. The use of quetiapine and clozapine in GBA variant-associated PD is briefly reviewed separately. Notably, no reports of pimavanserin therapy were identified. In keeping with the idiopathic PD literature, relatively low doses of medication were used in most cases. Lastly, side effects were rarely reported. Although quetiapine and particularly clozapine may be effective and well tolerated in the treatment of monogenic PD psychosis, this review highlights the paucity of available evidence to guide clinical decision making in this context.
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  • 文章类型: Journal Article
    在患有遗传疾病的儿童的管理中有效实施基于WES和WGS的诊断,以及NGS成本的快速降低,使这种方法可以扩展到新生儿遗传筛查计划。与传统的新生儿筛查相比,这种基于NGS的筛查大大增加了可以检测到的疾病数量,后者旨在早期发现有限数量的先天性疾病。此外,基因检测为先证者的家庭成员提供了新的可能性,因为许多导致成人发病的变种是从父母那里遗传的。然而,在健康儿童中进行基于NGS的筛查的想法引发了医学和伦理诚信以及技术问题,包括对观察到的变异的解释.试点研究表明,父母和医疗专业人员都取得了进步,并对这些新的可能性充满热情。然而,参与者的数量或以前调查中研究的基因数量,到目前为止,仅限于几百个,限制潜在发现的范围。我们目前的研究(NCT05325749)包括2021年2月至2023年5月在我们中心出生的7,000名明显健康的婴儿,他们在2,350个基因中进行了致病性变异筛查。与可以治疗的早发性疾病相关的临床重要变异,预防或症状可以通过及时引入对症治疗得到缓解,在0.9%的表型正常婴儿中观察到,2.1%的筛查新生儿被发现携带与成年期发作和/或可变表达的外显率降低或单基因疾病相关的变异,0.3%有染色体异常。这里,我们报告了我们的结果,并解决了有关被认为健康的新生儿变异解释的问题。
    The effective implementation of whole-exome sequencing- and whole-genome sequencing-based diagnostics in the management of children affected with genetic diseases and the rapid decrease in the cost of next-generation sequencing (NGS) enables the expansion of this method to newborn genetic screening programs. Such NGS-based screening greatly increases the number of diseases that can be detected compared to conventional newborn screening, as the latter is aimed at early detection of a limited number of inborn diseases. Moreover, genetic testing provides new possibilities for family members of the proband, as many variants responsible for adult-onset conditions are inherited from the parents. However, the idea of NGS-based screening in healthy children raises issues of medical and ethical integrity as well as technical questions, including interpretation of the observed variants. Pilot studies have shown that both parents and medical professionals have moved forward and are enthused about these new possibilities. However, either the number of participants or the number of genes studied in previous investigations thus far has been limited to a few hundred, restricting the scope of potential findings. Our current study (NCT05325749) includes 7,000 apparently healthy infants born at our center between February 2021 and May 2023, who were screened for pathogenic variants in 2,350 genes. Clinically significant variants associated with early-onset diseases that can be treated, prevented, or where symptoms can be alleviated with timely introduced symptomatic therapy, were observed in 0.9% of phenotypically normal infants, 2.1% of the screened newborns were found to carry variants associated with reduced penetrance or monogenic diseases of adult-onset and/or variable expressivity, and 0.3% had chromosomal abnormalities. Here, we report our results and address questions regarding the interpretation of variants in newborns who were presumed to be healthy.
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  • 文章类型: Journal Article
    目的:通过大规模研究中国人群单基因病的流行病学特征和突变谱,多中心载体筛选。
    方法:这项研究是在来自中国12个临床中心的33104名参与者(16610名女性)中进行的。使用高通量测序和不同的PCR方法分析了223个基因的载体状态。
    结果:在这些参与者中,197个常染色体基因的总体组合携带者频率为55.58%,26个X连锁基因的总体组合携带者频率为1.84%。在16669个家庭中,确定了874对有风险的夫妇(5.24%)。具体来说,584对夫妇(3.50%)有常染色体基因的风险,306(1.84%)的X连锁基因,常染色体和X连锁基因均为16。最常见的常染色体风险基因包括GJB2(常染色体隐性耳聋1A型,393对夫妇),HBA1/HBA2(α-地中海贫血,36对夫妇),PAH(苯丙酮尿症,14对夫妇),和SMN1(脊髓性肌萎缩症,14对夫妇)。最常见的X连锁风险基因是G6PD(G6PD缺乏症,236对夫妇),DMD(杜氏肌营养不良症,23对夫妇),和FMR1(脆性X综合征,17对夫妇)。排除GJB2c.109G>A后,高危夫妇的检出率为3.91%(651/16669),在进一步排除G6PD后,降至1.72%(287/16669)。严重单基因出生缺陷的理论发生率约为4.35‰(72.5/16669)。筛选高危夫妇中最常见的22种基因,可以检测到超过95%的高危夫妇,而筛选前54个基因的检出率进一步提高到99%以上。
    结论:这项研究揭示了中国人群中223种单基因遗传病的携带者频率,并为针对中国人群的携带者筛查策略开发和小组设计提供了证据。在载体测试中,针对特定基因或基因变异的遗传咨询可能具有挑战性,夫妇需要在测试前了解这些困难,并提供不筛查这些基因或基因变异的选择。
    OBJECTIVE: To investigate the epidemiological characteristics and mutation spectrum of monogenic diseases in Chinese population through a large-scale, multicenter carrier screening.
    METHODS: This study was conducted among a total of 33 104 participants (16 610 females) from 12 clinical centers across China.Carrier status for 223 genes was analyzed using high-throughput sequencing and different PCR methods.
    RESULTS: The overall combined carrier frequency was 55.58% for 197 autosomal genes and 1.84% for 26 X-linked genes in these participants.Among the 16 669 families, 874 at-risk couples (5.24%) were identified.Specifically, 584 couples (3.50%) were at risk for autosomal genes, 306(1.84%) for X-linked genes, and 16 for both autosomal and X-linked genes.The most frequently detected autosomal at-risk genes included GJB2(autosomal recessive deafness type 1A, 393 couples), HBA1/HBA2(α-thalassemia, 36 couples), PAH (phenylketonuria, 14 couples), and SMN1(spinal muscular atrophy, 14 couples).The most frequently detected X-linked at-risk genes were G6PD (G6PD deficiency, 236 couples), DMD (Duchenne muscular dystrophy, 23 couples), and FMR1(fragile X syndrome, 17 couples).After excluding GJB2 c.109G>A, the detection rate of at-risk couples was 3.91%(651/16 669), which was lowered to 1.72%(287/16 669) after further excluding G6PD.The theoretical incidence rate of severe monogenic birth defects was approximately 4.35‰(72.5/16 669).Screening for a battery of the top 22 most frequent genes in the at-risk couples could detect over 95% of at-risk couples, while screening for the top 54 genes further increased the detection rate to over 99%.
    CONCLUSIONS: This study reveals the carrier frequencies of 223 monogenic genetic disorders in the Chinese population and provides evidence for carrier screening strategy development and panel design tailored to the Chinese population.In carrier testing, genetic counseling for specific genes or gene variants can be challenging, and the couples need to be informed of these difficulties before testing and provided with options for not screening these genes or gene variants.
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  • 文章类型: Journal Article
    非编码重复扩增是主要影响中枢神经系统的遗传疾病的众所周知的原因。被常规诊断中使用的大多数标准技术所遗漏,必须使用特定技术(如重复引发PCR或应用于基因组数据的特定生物信息学工具)搜索致病性非编码重复扩增,比如ExpansionHunter.在这次审查中,我们专注于富含GC的重复扩展,它们表示到目前为止描述的所有非编码重复扩展的至少三分之一。富含GC的扩增主要位于调控区(启动子,5\'未翻译区域,第一个内含子)的基因,并且可以导致由RNA毒性和/或重复相关的非AUG(RAN)翻译介导的毒性功能获得,或者相关基因的功能丧失,取决于它们的大小和甲基化状态。我们在此回顾与这些难以检测的扩张相关的疾病的临床和分子特征。
    Noncoding repeat expansions are a well-known cause of genetic disorders mainly affecting the central nervous system. Missed by most standard technologies used in routine diagnosis, pathogenic noncoding repeat expansions have to be searched for using specific techniques such as repeat-primed PCR or specific bioinformatics tools applied to genome data, such as ExpansionHunter. In this review, we focus on GC-rich repeat expansions, which represent at least one third of all noncoding repeat expansions described so far. GC-rich expansions are mainly located in regulatory regions (promoter, 5\' untranslated region, first intron) of genes and can lead to either a toxic gain-of-function mediated by RNA toxicity and/or repeat-associated non-AUG (RAN) translation, or a loss-of-function of the associated gene, depending on their size and their methylation status. We herein review the clinical and molecular characteristics of disorders associated with these difficult-to-detect expansions.
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  • 文章类型: Journal Article
    IVF胚胎的种系基因组编辑是有争议的,因为它不是直接健康或挽救生命,而是旨在预防尚未出生的未来后代的遗传疾病。因此,为未来的临床试验提出了以下标准:(I)由于医疗风险,应该谨慎和明智的应用,同时避免任何非必要的使用,严格的耐心咨询。(ii)如果预期所有胚胎都受到遗传疾病的影响,则基因组编辑应仅对整个批次的IVF胚胎进行,而无需进行初始PGT筛选。(iii)当某些IVF胚胎有可能不会受到遗传疾病的影响时,必须进行初步PGT筛查,以确定未受影响的胚胎进行移植.(iv)具有携带者状态的IVF胚胎不应进行种系基因组编辑。(v)如果患者在转移未受影响的胚胎后未能怀孕,他们应该接受另一个新鲜的IVF周期,而不是选择对剩余的受影响胚胎进行基因组编辑。(vi)仅当患者由于高龄或卵巢储备减少而无法在新鲜的IVF周期中产生更多未受影响的胚胎时,作为最后的手段,是否可以允许对剩余的受影响胚胎进行基因组编辑。
    Germline genome editing of IVF embryos is controversial because it is not directly health or lifesaving but is intended to prevent genetic diseases in yet-unborn future offspring. The following criteria are thus proposed for future clinical trials: (i) Due to medical risks, there should be cautious and judicious application while avoiding any non-essential usage, with rigorous patient counseling. (ii) Genome editing should only be performed on the entire batch of IVF embryos without initial PGT screening if all of them are expected to be affected by genetic disease. (iii) When there is a fair chance that some IVF embryos will not be affected by genetic diseases, initial PGT screening must be performed to identify unaffected embryos for transfer. (iv) IVF embryos with carrier status should not undergo germline genome editing. (v) If patients fail to conceive after the transfer of unaffected embryos, they should undergo another fresh IVF cycle rather than opt for genome editing of their remaining affected embryos. (vi) Only if the patient is unable to produce any more unaffected embryos in a fresh IVF cycle due to advanced maternal age or diminished ovarian reserves, can the genome editing of remaining affected embryos be permitted as a last resort.
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  • 文章类型: Journal Article
    神经单基因功能丧失疾病是由基因突变导致的遗传性疾病,该基因突变会降低或消除编码蛋白质的正常功能。这些情况带来了重大的治疗挑战,这可以通过开发创新的治疗策略来解决。基于RNA的技术,如mRNA替代疗法,已经成为有希望和越来越可行的治疗方法。值得注意的是,mRNA治疗作为突变不可知的方法显示出显著的潜力,其可以解决几乎任何单基因功能丧失疾病。治疗性mRNA携带有缺陷蛋白的健康拷贝的信息,绕过针对特定遗传变异的问题。此外,不同于传统的基因疗法,基于mRNA的药物通过简化的过程传递,只需要转移到细胞质,从而降低与DNA整合相关的诱变风险。此外,mRNA治疗对靶细胞产生短暂的影响,将长期意外后果的风险降至最低。mRNA技术在开发COVID-19疫苗方面的巨大成功,重新激发了人们对mRNA作为一种经济有效的递送治疗性蛋白质方法的兴趣。然而,需要进一步优化以增强mRNA递送,特别是中枢神经系统,同时尽量减少药物不良反应和毒性。在这次全面审查中,我们钻研过去,present,以及mRNA治疗在神经单基因功能丧失疾病中的持续应用。我们还讨论了mRNA疗法在这个快速发展的领域中提出的承诺和潜在挑战。最终,我们强调了mRNA治疗作为一种改变神经系统疾病的治疗方法的全部潜力.
    Neurological monogenic loss-of-function diseases are hereditary disorders resulting from gene mutations that decrease or abolish the normal function of the encoded protein. These conditions pose significant therapeutic challenges, which may be resolved through the development of innovative therapeutic strategies. RNA-based technologies, such as mRNA replacement therapy, have emerged as promising and increasingly viable treatments. Notably, mRNA therapy exhibits significant potential as a mutation-agnostic approach that can address virtually any monogenic loss-of-function disease. Therapeutic mRNA carries the information for a healthy copy of the defective protein, bypassing the problem of targeting specific genetic variants. Moreover, unlike conventional gene therapy, mRNA-based drugs are delivered through a simplified process that requires only transfer to the cytoplasm, thereby reducing the mutagenic risks related to DNA integration. Additionally, mRNA therapy exerts a transient effect on target cells, minimizing the risk of long-term unintended consequences. The remarkable success of mRNA technology for developing coronavirus disease 2019 vaccines has rekindled interest in mRNA as a cost-effective method for delivering therapeutic proteins. However, further optimization is required to enhance mRNA delivery, particularly to the CNS, while minimizing adverse drug reactions and toxicity. In this comprehensive review, we delve into past, present and ongoing applications of mRNA therapy for neurological monogenic loss-of-function diseases. We also discuss the promises and potential challenges presented by mRNA therapeutics in this rapidly advancing field. Ultimately, we underscore the full potential of mRNA therapy as a game-changing therapeutic approach for neurological disorders.
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    文章类型: Journal Article
    近年来,已经观察到产前筛查方法的转变,从传统的方法如超声和母体血清学标记物转向利用基于从外周血中提取的cfDNA的非侵入性产前检测(NIPT)。这项尖端技术已经确立了自己作为主要筛选方法的地位,归因于其优越的检出率和降低的假阳性率。尽管NIPT主要集中在筛查染色体异常,它目前不包括单基因疾病的鉴定。考虑到单基因疾病对出生缺陷的贡献很大,占案件的7.5%至12%,必须将单基因疾病筛查纳入出生缺陷预防和控制系统。这项研究旨在提供专门针对单基因疾病的NIPT最新进展的简要概述。
    In recent years, a shift in prenatal screening methods has been observed, moving away from traditional approaches such as ultrasound and maternal serologic markers towards the utilization of noninvasive prenatal testing (NIPT) based on cfDNA extracted from peripheral blood. This cutting-edge technology has established itself as the primary screening method, attributed to its superior detection rate and reduced false-positive rate. Although NIPT predominantly focuses on screening for chromosomal abnormalities, it currently does not encompass the identification of single-gene disorders. Considering that single-gene disorders contribute significantly to birth defects, accounting for 7.5% to 12% of cases, it becomes imperative to integrate screening for single-gene disorders into the birth defect prevention and control system. This study aims to provide a succinct overview of the recent advancements in NIPT specifically tailored for monogenic disorders.
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